EsuBft2989_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2989_4a-0001
Unique NameEsuBft2989_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:139585..140128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2989_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length54
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2989_4aEsuBft2989_4aEctocarpus subulatus male Bft15bgeneScaffold_360 139585..140128 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2989_4a-0001-exonEsuBft2989_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 139585..140128 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2989_4a-0001-exonagat-five_prime_utr-7573Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_360 139585..139768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2989_4a-0001-cdsEsuBft2989_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 139769..140104 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2989_4a-0001-exonagat-three_prime_utr-11927Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_360 140105..140128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2989_4a-0001EsuBft2989_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 139769..140104 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2989_4a-0001 ID=EsuBft2989_4a-0001|Name=EsuBft2989_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=544bp|location=Sequence derived from alignment at Scaffold_360:139585..140128+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTCTAGCGACTCTCTGGGGGGGAGTTGGACAAGGATGGAAAGCTACCTG
GCTACGGGGTCTCCTTCAGCTTCAAGTGGGAACGTTCGTTTGGTGATTTC
GGGCACTTCTACGACGGCCAGAGAGTAGGTCTTTGGCTAGGCCCAGACAG
GCCGCACGAGGGCAACCACCAAGGGCCCTGCCAAATGAAGTATGGCGGAG
TGTCCCGGTGCCCGCAGCTCACGGGTGTCAACTGCAACGTTCACGAACAA
AACCACTCGAAGAAGACCGAGCACCTACCCAGCGTCAGCGGCATGGGGTT
CGACACATTCACTTTTAACATCACCTTGATCAACGAGTTGGAAAATGTAA
AAATCAACCGCAAAACATGCAGCGTGGCAGTCTCAAGTGCCACCGAACAC
CCCCACGAACGTCTGCATGCCTGCCGTAAGGAAGTGTCGACTTGCGGTCG
CTGCTTCTGCAGCAAGCCTCTTATGAGGTCGTTCGACCAGTTCGGTAAAT
TGCGCATCACGCACATGTAGCGGGTTGTGGGTAGAACGGTGTGG
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protein sequence of EsuBft2989_4a-0001

>EsuBft2989_4 ID=EsuBft2989_4|Name=EsuBft2989_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=111bp
MKYGGVSRCPQLTGVNCNVHEQNHSKKTEHLPSVSGMGFDTFTFNITLIN
ELENVKINRKTCSVAVSSATEHPHERLHACRKEVSTCGRCFCSKPLMRSF
DQFGKLRITHM
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mRNA from alignment at Scaffold_360:139585..140128+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2989_4a-0001 ID=EsuBft2989_4a-0001|Name=EsuBft2989_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=544bp|location=Sequence derived from alignment at Scaffold_360:139585..140128+ (Ectocarpus subulatus male Bft15b)
TTTCTAGCGACTCTCTGGGGGGGAGTTGGACAAGGATGGAAAGCTACCTG
GCTACGGGGTCTCCTTCAGCTTCAAGTGGGAACGTTCGTTTGGTGATTTC
GGGCACTTCTACGACGGCCAGAGAGTAGGTCTTTGGCTAGGCCCAGACAG
GCCGCACGAGGGCAACCACCAAGGGCCCTGCCAAATGAAGTATGGCGGAG
TGTCCCGGTGCCCGCAGCTCACGGGTGTCAACTGCAACGTTCACGAACAA
AACCACTCGAAGAAGACCGAGCACCTACCCAGCGTCAGCGGCATGGGGTT
CGACACATTCACTTTTAACATCACCTTGATCAACGAGTTGGAAAATGTAA
AAATCAACCGCAAAACATGCAGCGTGGCAGTCTCAAGTGCCACCGAACAC
CCCCACGAACGTCTGCATGCCTGCCGTAAGGAAGTGTCGACTTGCGGTCG
CTGCTTCTGCAGCAAGCCTCTTATGAGGTCGTTCGACCAGTTCGGTAAAT
TGCGCATCACGCACATGTAGCGGGTTGTGGGTAGAACGGTGTGG
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Coding sequence (CDS) from alignment at Scaffold_360:139585..140128+

>EsuBft2989_4a-0001 ID=EsuBft2989_4a-0001|Name=EsuBft2989_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=336bp|location=Sequence derived from alignment at Scaffold_360:139585..140128+ (Ectocarpus subulatus male Bft15b)
ATGAAGTATGGCGGAGTGTCCCGGTGCCCGCAGCTCACGGGTGTCAACTG
CAACGTTCACGAACAAAACCACTCGAAGAAGACCGAGCACCTACCCAGCG
TCAGCGGCATGGGGTTCGACACATTCACTTTTAACATCACCTTGATCAAC
GAGTTGGAAAATGTAAAAATCAACCGCAAAACATGCAGCGTGGCAGTCTC
AAGTGCCACCGAACACCCCCACGAACGTCTGCATGCCTGCCGTAAGGAAG
TGTCGACTTGCGGTCGCTGCTTCTGCAGCAAGCCTCTTATGAGGTCGTTC
GACCAGTTCGGTAAATTGCGCATCACGCACATGTAG
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