EsuBft2989_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2989_2a-0001
Unique NameEsuBft2989_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_360contigScaffold_360:147605..148948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LLA9
ProteomeIdEsuBft2989_2
Protein domainsG3DSA
Protein domainsIPR016137
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2880.D8LLA9|-
Length53
Hectar predicted targeting categoryother localisation
Evalue1.3e-38
EggNOG OGs2D0MX@1|root,2SERP@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRegulator of G protein signaling domain
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0038032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2989_2aEsuBft2989_2aEctocarpus subulatus male Bft15bgeneScaffold_360 147605..148948 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2989_2a-0001-exonagat-exon-20732Ectocarpus subulatus male Bft15bexonScaffold_360 147605..147904 +
EsuBft2989_2a-0001-exonagat-exon-20731Ectocarpus subulatus male Bft15bexonScaffold_360 148675..148881 +
EsuBft2989_2a-0001-exonEsuBft2989_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_360 148925..148948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2989_2a-0001-cdsEsuBft2989_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_360 147605..147904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2989_2a-0001EsuBft2989_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_360 147605..148948 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2989_2a-0001 ID=EsuBft2989_2a-0001|Name=EsuBft2989_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=531bp|location=Sequence derived from alignment at Scaffold_360:147605..148948+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCATGTCGAACGCAGCAATATCCAGTCGATAAGGGCATCAGTACT
ACCGCGAAGGAGGCGAAACAACTACAACAACGGAGGCATCATTGCGTCAC
TCCTGCCGTACATCCCGTGGAGAGAAGACGCCAGCATCGTCGCGGTCGAT
GCGGTGGGACGCAGGTTCACTTCAAGAGGTGTCTCATTGGGTAACATCAA
CCGCAGCGTCAAGTTGGATGATGCGTTGGAGCAAATTTTATGCTTTACCC
CGCTGCTGGAGGCGTTTGAAGAGTTTTGCCAGAAGGCCCTCTGCATCGAG
TCACTCATGTTCTTGAAGGCGGTTATGGGATTCAGGGGTTCCGTTCATGC
ATCGACCGCCAGTGACGACGGCAATTTCACACTGTTGACGGATATCGTCC
AAAAGTACGTCCAGAGCGGGTCTCCGTTTGAGGTCAACATCGACAGCAAG
ACCAAGAGCAATATTCTGGTAAAGATCACAAGGGAAACCTTCATGCGACT
TCCTCAGGTGATGGGTGTACGCGAACTCTAG
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protein sequence of EsuBft2989_2a-0001

>EsuBft2989_2 ID=EsuBft2989_2|Name=EsuBft2989_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=176bp
MFHVERSNIQSIRASVLPRRRRNNYNNGGIIASLLPYIPWREDASIVAVD
AVGRRFTSRGVSLGNINRSVKLDDALEQILCFTPLLEAFEEFCQKALCIE
SLMFLKAVMGFRGSVHASTASDDGNFTLLTDIVQKYVQSGSPFEVNIDSK
TKSNILVKITRETFMRLPQVMGVREL
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mRNA from alignment at Scaffold_360:147605..148948+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2989_2a-0001 ID=EsuBft2989_2a-0001|Name=EsuBft2989_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1344bp|location=Sequence derived from alignment at Scaffold_360:147605..148948+ (Ectocarpus subulatus male Bft15b)
ATGTTCCATGTCGAACGCAGCAATATCCAGTCGATAAGGGCATCAGTACT
ACCGCGAAGGAGGCGAAACAACTACAACAACGGAGGCATCATTGCGTCAC
TCCTGCCGTACATCCCGTGGAGAGAAGACGCCAGCATCGTCGCGGTCGAT
GCGGTGGGACGCAGGTTCACTTCAAGAGGTGTCTCATTGGGTAACATCAA
CCGCAGCGTCAAGTTGGATGATGCGTTGGAGCAAATTTTATGCTTTACCC
CGCTGCTGGAGGCGTTTGAAGAGTTTTGCCAGAAGGCCCTCTGCATCGAG
GTACGACCAGGTTCTTCACCTCGTGCATCGGATGGTTCGTTGGTACAACC
ATTTTCTACACACGATGGTGGATCCAAAAAAGTTCCATATTCTTTGTCAG
TTCGGAGAGTGAGCGAGTATTGTCACACAACGAAGTCCGCATGTGAGGTA
CACGCAGGTCCGGGATGAACCGAAACAAAGATATCATAATGGTGGTCGAG
TAGATCATGTTGTGTGGGGTCGAGAAGCCTCACTCCGCGCAAGGGGGATG
ATCATACCACGTTGTGTTAAAATGGTCAAGCACCCTCGACGCAGTTACAC
CGTGCTTATAACTGTATCAGGAAGTGAAAGTACCAGAAAATTTAGTCATA
CGCAGCTGTCATCCGTACGCAAGGAAGTAAGCACAAGATGCCGAACACCC
TTAGCAGGATGCAGCGCACCCTTCATGCGACTAGCCGAACACCTCACGGC
GCTTCGCGCTTGGTGATGCGAGAGCCTGGTCCGGTGAGAACCCGGTGTGC
TCTGTCCGGGCTTTGTAGGGATGCGCACGACTATGAGTACACCCCCCCCC
CTGTGTGGCCTCCGTACCATTTACGACCTCGCTAATGTAGTCATTTTGTT
CTACTCTCTGCTTGTCACATGAGGAAGACGACAAGTCATCATATTCAACG
TTCGTTTAGGTTTTGTGGATCCCCCCCCCTCTCACTTTTGCTCTCCCAAT
GCCCCTCTCCCCAACTTTTCGCGACCGATGATCTATCACCGCGACGATGC
GATGCGATGTCATCGTACAGTCACTCATGTTCTTGAAGGCGGTTATGGGA
TTCAGGGGTTCCGTTCATGCATCGACCGCCAGTGACGACGGCAATTTCAC
ACTGTTGACGGATATCGTCCAAAAGTACGTCCAGAGCGGGTCTCCGTTTG
AGGTCAACATCGACAGCAAGACCAAGAGCAATATTCTGGTAAAGATCACA
AGGGAAACCTTCATGCGACTTCCTCAGGTACGTCCATGGGTCGGTGGTGG
TTACGGGAAGTTCATAATAGGTGATGGGTGTACGCGAACTCTAG
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Coding sequence (CDS) from alignment at Scaffold_360:147605..148948+

>EsuBft2989_2a-0001 ID=EsuBft2989_2a-0001|Name=EsuBft2989_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=531bp|location=Sequence derived from alignment at Scaffold_360:147605..148948+ (Ectocarpus subulatus male Bft15b)
ATGTTCCATGTCGAACGCAGCAATATCCAGTCGATAAGGGCATCAGTACT
ACCGCGAAGGAGGCGAAACAACTACAACAACGGAGGCATCATTGCGTCAC
TCCTGCCGTACATCCCGTGGAGAGAAGACGCCAGCATCGTCGCGGTCGAT
GCGGTGGGACGCAGGTTCACTTCAAGAGGTGTCTCATTGGGTAACATCAA
CCGCAGCGTCAAGTTGGATGATGCGTTGGAGCAAATTTTATGCTTTACCC
CGCTGCTGGAGGCGTTTGAAGAGTTTTGCCAGAAGGCCCTCTGCATCGAG
TCACTCATGTTCTTGAAGGCGGTTATGGGATTCAGGGGTTCCGTTCATGC
ATCGACCGCCAGTGACGACGGCAATTTCACACTGTTGACGGATATCGTCC
AAAAGTACGTCCAGAGCGGGTCTCCGTTTGAGGTCAACATCGACAGCAAG
ACCAAGAGCAATATTCTGGTAAAGATCACAAGGGAAACCTTCATGCGACT
TCCTCAGGTGATGGGTGTACGCGAACTCTAG
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