EsuBft2982_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2982_3a-0001
Unique NameEsuBft2982_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:1339600..1340489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2982_3
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsTMhelix
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsTRANSMEMBRANE
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length89
Hectar predicted targeting categorysignal anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2982_3aEsuBft2982_3aEctocarpus subulatus male Bft15bgeneScaffold_630 1339600..1340489 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2982_3a-0001-exonEsuBft2982_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 1339600..1340489 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2982_3a-0001-exonagat-five_prime_utr-7568Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 1339600..1339857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2982_3a-0001-cdsEsuBft2982_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 1339858..1340118 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2982_3a-0001-exonagat-three_prime_utr-11911Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 1340119..1340489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2982_3a-0001EsuBft2982_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 1339858..1340118 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2982_3a-0001 ID=EsuBft2982_3a-0001|Name=EsuBft2982_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=890bp|location=Sequence derived from alignment at Scaffold_630:1339600..1340489+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTTGTGTTTCCCGTCTAGCTCTGCCACTGCCTTGACCTATGCTTGCTGTT
CCGACGGCCGCCGCCGCCACAGCCGCAGCTTGAGCTATCGTCCCTCCTGT
AACGGCACCTGCCGTGCCTCCTGCCGCAGCTGTTGGTCGAGGTTCAGCAC
AGGGACTAGAACTTGCAGTGCCGCCTCGTCCTCGTCTTTGTTCCCCTTGT
AACGCCGCCGCCCCAGCCGCTAGTAGCGGTGCCGGTGGTTGAGGAACAGG
TGTGGTAGATGGTGGTGGGCTTGGTGACGTCACTCCTGTTGTTGCCGCTT
GTGTTGCTGTTGCCGCTGCTGGTGATGTTGCTGTTGGTGCTTGGGGCATT
CCTGCTGCTACTGTTGCAGATGGTTCTACTGTCCCTCCTGCTTCCGGCCC
CTCTGTTGCTGCAACCACCTCTGATGCCGCTGCTCCTACAGGACGTTCTC
TACGAGCTTTCCCCTTGCCTTTCCCCTTGGAAGACGGCGACTGGGTTGAA
GCGGTTGCGGAGTTATTGATGCCCCACCAACGACATGTACTGCCTGGCTC
GTACTGCCTCTTCCGACGTCAGATATGGTCGTCGGTGTACTTTCCTCGTC
GTTTCCCATGTTGCCTTCGTTCGTAGCACCTTCGCAACTGACTCGCTTAC
GCTTCCGTGTTGTTGTGTCTGCCCACCCCATGACCGTACGGAAAGCTGCT
GCCTGCCGTGATCGCTTCTCCTCGTCGCTCTTTTTCTCTGCGTTTGATTT
CGTCCCGGGCTTTTTTGCCCCAGCCGCAGGCGTTGATCCTTTCCTGCGAC
CCATGGTACATCCTCTGTGGTGCTGTGCGTGTGCTGTGGGTTGTACGTGT
GTGTGCTGCGGTGAGAGAGCTGTGTCCTTTCTCTTTGCGC
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protein sequence of EsuBft2982_3a-0001

>EsuBft2982_3 ID=EsuBft2982_3|Name=EsuBft2982_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=86bp
MVVGLVTSLLLLPLVLLLPLLVMLLLVLGAFLLLLLQMVLLSLLLPAPLL
LQPPLMPLLLQDVLYELSPCLSPWKTATGLKRLRSY
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mRNA from alignment at Scaffold_630:1339600..1340489+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2982_3a-0001 ID=EsuBft2982_3a-0001|Name=EsuBft2982_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=890bp|location=Sequence derived from alignment at Scaffold_630:1339600..1340489+ (Ectocarpus subulatus male Bft15b)
CTTGTGTTTCCCGTCTAGCTCTGCCACTGCCTTGACCTATGCTTGCTGTT
CCGACGGCCGCCGCCGCCACAGCCGCAGCTTGAGCTATCGTCCCTCCTGT
AACGGCACCTGCCGTGCCTCCTGCCGCAGCTGTTGGTCGAGGTTCAGCAC
AGGGACTAGAACTTGCAGTGCCGCCTCGTCCTCGTCTTTGTTCCCCTTGT
AACGCCGCCGCCCCAGCCGCTAGTAGCGGTGCCGGTGGTTGAGGAACAGG
TGTGGTAGATGGTGGTGGGCTTGGTGACGTCACTCCTGTTGTTGCCGCTT
GTGTTGCTGTTGCCGCTGCTGGTGATGTTGCTGTTGGTGCTTGGGGCATT
CCTGCTGCTACTGTTGCAGATGGTTCTACTGTCCCTCCTGCTTCCGGCCC
CTCTGTTGCTGCAACCACCTCTGATGCCGCTGCTCCTACAGGACGTTCTC
TACGAGCTTTCCCCTTGCCTTTCCCCTTGGAAGACGGCGACTGGGTTGAA
GCGGTTGCGGAGTTATTGATGCCCCACCAACGACATGTACTGCCTGGCTC
GTACTGCCTCTTCCGACGTCAGATATGGTCGTCGGTGTACTTTCCTCGTC
GTTTCCCATGTTGCCTTCGTTCGTAGCACCTTCGCAACTGACTCGCTTAC
GCTTCCGTGTTGTTGTGTCTGCCCACCCCATGACCGTACGGAAAGCTGCT
GCCTGCCGTGATCGCTTCTCCTCGTCGCTCTTTTTCTCTGCGTTTGATTT
CGTCCCGGGCTTTTTTGCCCCAGCCGCAGGCGTTGATCCTTTCCTGCGAC
CCATGGTACATCCTCTGTGGTGCTGTGCGTGTGCTGTGGGTTGTACGTGT
GTGTGCTGCGGTGAGAGAGCTGTGTCCTTTCTCTTTGCGC
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Coding sequence (CDS) from alignment at Scaffold_630:1339600..1340489+

>EsuBft2982_3a-0001 ID=EsuBft2982_3a-0001|Name=EsuBft2982_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=261bp|location=Sequence derived from alignment at Scaffold_630:1339600..1340489+ (Ectocarpus subulatus male Bft15b)
ATGGTGGTGGGCTTGGTGACGTCACTCCTGTTGTTGCCGCTTGTGTTGCT
GTTGCCGCTGCTGGTGATGTTGCTGTTGGTGCTTGGGGCATTCCTGCTGC
TACTGTTGCAGATGGTTCTACTGTCCCTCCTGCTTCCGGCCCCTCTGTTG
CTGCAACCACCTCTGATGCCGCTGCTCCTACAGGACGTTCTCTACGAGCT
TTCCCCTTGCCTTTCCCCTTGGAAGACGGCGACTGGGTTGAAGCGGTTGC
GGAGTTATTGA
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