EsuBft2969_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2969_3a-0001
Unique NameEsuBft2969_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_390contigScaffold_390:428720..429307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2969_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length45
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2969_3aEsuBft2969_3aEctocarpus subulatus male Bft15bgeneScaffold_390 428720..429307 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2969_3a-0001-exonEsuBft2969_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_390 428720..428848 -
EsuBft2969_3a-0001-exonagat-exon-110921Ectocarpus subulatus male Bft15bexonScaffold_390 428980..429307 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2969_3a-0001-exonagat-three_prime_utr-11848Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_390 428720..428740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2969_3a-0001-cdsEsuBft2969_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_390 428741..428848 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2969_3a-0001-exonagat-five_prime_utr-7530Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_390 429283..429307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2969_3a-0001EsuBft2969_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_390 428741..429282 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2969_3a-0001 ID=EsuBft2969_3a-0001|Name=EsuBft2969_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=457bp|location=Sequence derived from alignment at Scaffold_390:428720..429307- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTCCAGTGCGTCACACGAACCAGCATGGCACTCGACCTAGAGGTAACCA
ACAGAGCGCCGGCACTGCCAGTAGAACTCACGAATGACCTCATGGATTCC
TTTGGGATCTTCTGCGCTACGTATGGAGGTACACCTCTCGGCCAGCAGTC
CCAGAAAGCCCTGCAGTGCTTCCCTATAGCATGGGCTTGTCTCGCCGTCA
AGGAGGCGGAGAAGAAAAGCAAAGAAGTTCGTGACAGAGACGTGTCGAGG
TGCTACCATGATGAAATCGAGCTTCCTGGCTGGATAAAGTTGTGCAACCG
AGCTATCGCGAGTCCGCGGAGNATGGAGGAAATCGCGCTTCCTGGCTGGA
TAAAGTTGTGCCACCGAGCTATCGCGGAGTCCGCGGAGTCCGACAACCCG
CTGCGCTTCCCGGCCGGGTGGGAGACTAAGCTCTAGACTACTTCACCACG
CTCGGAG
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protein sequence of EsuBft2969_3a-0001

>EsuBft2969_3 ID=EsuBft2969_3|Name=EsuBft2969_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=136bp
MALDLEVTNRAPALPVELTNDLMDSFGIFCATYGGTPLGQQSQKALQCFP
IAWACLAVKEAEKKSKEVRDRDVSRCYHDEIELPGWIKLCNRAIASPRXM
EEIALPGWIKLCHRAIAESAESDNPLRFPAGWETKL
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mRNA from alignment at Scaffold_390:428720..429307-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2969_3a-0001 ID=EsuBft2969_3a-0001|Name=EsuBft2969_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=588bp|location=Sequence derived from alignment at Scaffold_390:428720..429307- (Ectocarpus subulatus male Bft15b)
TGTCCAGTGCGTCACACGAACCAGCATGGCACTCGACCTAGAGGTAACCA
ACAGAGCGCCGGCACTGCCAGTAGAACTCACGAATGACCTCATGGATTCC
TTTGGGATCTTCTGCGCTACGTATGGAGGTACACCTCTCGGCCAGCAGTC
CCAGAAAGCCCTGCAGTGCTTCCCTATAGCATGGGCTTGTCTCGCCGTCA
AGGAGGCGGAGAAGAAAAGCAAAGAAGTTCGTGACAGAGACGTGTCGAGG
TGCTACCATGATGAAATCGAGCTTCCTGGCTGGATAAAGTTGTGCAACCG
AGCTATCGCGAGTCCGCGGAGNATGGAGGTACACCTCTCGGCCAGCAGTC
CCAGAAAGCCCTGCAGTGCTTCCCTATAGCATGGGCTTGTCTCGCCGTCA
AGGAGGCGGAGAAGAAAAGCAAAGAAGTTCGTGAAAGAGACGTGTCGAGG
TGCTACCAGGAAATCGCGCTTCCTGGCTGGATAAAGTTGTGCCACCGAGC
TATCGCGGAGTCCGCGGAGTCCGACAACCCGCTGCGCTTCCCGGCCGGGT
GGGAGACTAAGCTCTAGACTACTTCACCACGCTCGGAG
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Coding sequence (CDS) from alignment at Scaffold_390:428720..429307-

>EsuBft2969_3a-0001 ID=EsuBft2969_3a-0001|Name=EsuBft2969_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=411bp|location=Sequence derived from alignment at Scaffold_390:428720..429307- (Ectocarpus subulatus male Bft15b)
ATGGCACTCGACCTAGAGGTAACCAACAGAGCGCCGGCACTGCCAGTAGA
ACTCACGAATGACCTCATGGATTCCTTTGGGATCTTCTGCGCTACGTATG
GAGGTACACCTCTCGGCCAGCAGTCCCAGAAAGCCCTGCAGTGCTTCCCT
ATAGCATGGGCTTGTCTCGCCGTCAAGGAGGCGGAGAAGAAAAGCAAAGA
AGTTCGTGACAGAGACGTGTCGAGGTGCTACCATGATGAAATCGAGCTTC
CTGGCTGGATAAAGTTGTGCAACCGAGCTATCGCGAGTCCGCGGAGNATG
GAGGAAATCGCGCTTCCTGGCTGGATAAAGTTGTGCCACCGAGCTATCGC
GGAGTCCGCGGAGTCCGACAACCCGCTGCGCTTCCCGGCCGGGTGGGAGA
CTAAGCTCTAG
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