EsuBft2953_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2953_2a-0001
Unique NameEsuBft2953_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_211contigScaffold_211:25338..29260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FQW8
ProteomeIdEsuBft2953_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length135
Evalue2.33e-23
EggNOG OGsKOG2408@1|root,KOG2408@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Descriptionperoxidase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2953_2aEsuBft2953_2aEctocarpus subulatus male Bft15bgeneScaffold_211 25338..29260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2953_2a-0001EsuBft2953_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_211 25338..29260 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2953_2a-0001-exonEsuBft2953_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_211 25338..25843 -
EsuBft2953_2a-0001-exonagat-exon-12836Ectocarpus subulatus male Bft15bexonScaffold_211 25943..26272 -
EsuBft2953_2a-0001-exonagat-exon-12834Ectocarpus subulatus male Bft15bexonScaffold_211 26367..26436 -
EsuBft2953_2a-0001-exonagat-exon-12833Ectocarpus subulatus male Bft15bexonScaffold_211 27735..27878 -
EsuBft2953_2a-0001-exonagat-exon-12837Ectocarpus subulatus male Bft15bexonScaffold_211 28473..28643 -
EsuBft2953_2a-0001-exonagat-exon-12835Ectocarpus subulatus male Bft15bexonScaffold_211 29126..29260 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2953_2a-0001-cdsEsuBft2953_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_211 25338..25843 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2953_2a-0001 ID=EsuBft2953_2a-0001|Name=EsuBft2953_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1356bp|location=Sequence derived from alignment at Scaffold_211:25338..29260- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTCATCGTCATCGGATGCTGCAGCGAGGAGCTAGACAAGTTGCT
AGATTTGCCCAGATTGGCTATTTCTGCTCAAACTGTTTCAGGGCGGTATC
GCGTCGGGCGGTGGGCTCTGNAGGATATCGAACAAACCGTGGTACAGCGA
GCGTACAGCGCGTTCGCGGTACGGGTTCTCGACGAGAAGGGAAAGCGGCG
GGTGGTGCCCGCGCTCGAGTCGAGCGAGGGCGTCCTGTGCGTGGAGATGC
GGATCAGGCTTTATCCAGACGGGTTGATGAACGGCCTCCTGGCTCAGCTT
ATCAGGGTACGTGGGATCGGTCACCAGAACTTGGATAACTCCGCGGTGCA
GCTGCAGGGGGCCTTCCTGAGGCACTGGCTCACCCCTTCGCCTGCCCACC
GGAACGCGGTGATGATCGCGGCTGGAACCGGTCCTAACCAAAGAGAGTGT
GCTAAAGTGAACGGGCTGTTGGAGGTCACAGCTCTGATAAGCGGTGACGT
CACCCGTTGCAACATCCCCGGGGACACCAAGCACGACTACACCGCAGAGC
ACGCCGCCTTCCCGGCCAACCTGCCCTACCTCCGGTCCGTCCGCGAGCTG
TCGCGCGTTTCGGAGGAAGACCCAACCCACACCCGATGGAGCAAGAGACC
CCATAGCCTTGGTTTGTTTACCAGCGGCGTCAGCAGGGACCTGGGGGCCG
GCGCGGTGGCGAAGACCTTAGTCGCGAGAACAATATCGGTGACGATGTTC
CGCGGTCCGCGAGCGACGCCGCCGCCGACACGGGTAAAGCTGGGAGGAAC
CGTCAGCATGGAGTCGGCGGCGGCGGCGGCGGCGGCTGGCACAGCGGAAG
AAGAGCAGCAGCCACAACGACGGCATACCCAGGGGCACCCTGATCCTGGT
CGCAGAGGGAGTGGGGGTGGGCATTTGGTCGACACGGACTGGGGCAGCAC
CAGGCGCAAGAACCCCGCTCGAAATTCCACCGGTGGCCCGAGCGGTGGCA
GTGGCGACGGCCTAGGAGGAAACAGCGCGCGGAGCGACATCCATGTCGCC
GATAGCATTCGGGCGGCGGGCCTGGACCGTGGACGCTGGTCTAAGAAGAA
GTCTCGGGAAAGAAAGTTAAAGCTCTTCAGCTATGCCGAGGATGAAGGTG
GAGGTGGTGGTGGCGGCGGTTGCGGTGGCGGTGACACAAGCAAGCCCACC
GCCCTCCGGTTCCGCTCTTCTTTCCGGCCGAAGATCGGTACGGAGTATGA
TGTCGCGGACGATTTCTCGGGCACCGGGCAAGGGCGACAACCAAAGGCTT
TTGGGGCACGGAGAAAGGGGAGGCGATGGGCTTCGAGGGACACGTCAGCG
ATGTGA
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protein sequence of EsuBft2953_2a-0001

>EsuBft2953_2 ID=EsuBft2953_2|Name=EsuBft2953_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=451bp
MRVIVIGCCSEELDKLLDLPRLAISAQTVSGRYRVGRWALXDIEQTVVQR
AYSAFAVRVLDEKGKRRVVPALESSEGVLCVEMRIRLYPDGLMNGLLAQL
IRVRGIGHQNLDNSAVQLQGAFLRHWLTPSPAHRNAVMIAAGTGPNQREC
AKVNGLLEVTALISGDVTRCNIPGDTKHDYTAEHAAFPANLPYLRSVREL
SRVSEEDPTHTRWSKRPHSLGLFTSGVSRDLGAGAVAKTLVARTISVTMF
RGPRATPPPTRVKLGGTVSMESAAAAAAAGTAEEEQQPQRRHTQGHPDPG
RRGSGGGHLVDTDWGSTRRKNPARNSTGGPSGGSGDGLGGNSARSDIHVA
DSIRAAGLDRGRWSKKKSRERKLKLFSYAEDEGGGGGGGGCGGGDTSKPT
ALRFRSSFRPKIGTEYDVADDFSGTGQGRQPKAFGARRKGRRWASRDTSA
M
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mRNA from alignment at Scaffold_211:25338..29260-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2953_2a-0001 ID=EsuBft2953_2a-0001|Name=EsuBft2953_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3923bp|location=Sequence derived from alignment at Scaffold_211:25338..29260- (Ectocarpus subulatus male Bft15b)
ATGCGTGTCATCGTCATCGGATGCTGCAGCGAGGAGCTAGACAAGTTGCT
AGATTTGCCCAGATTGGCTATTTCTGCTCAAACTGTTTCAGGGCGGTATC
GCGTCGGGCGGTGGGCTCTGNAGGATATCGAACAAGTACAGGATGGCAAC
GCAGGGAGGGTCAGGCAGTCGTTGCCGCCAGTGTTGTAAATATGGTAGTA
GTTGAACGAAAGCAAACGTTCCTTGGACGGCAACAACATCTTTGGGGGGG
AACTCAACCCGAAACGTACATTCATACACCCTGCCACCGCCCAAACGCCT
GCTTCATTAATATTTGCGTCGTTACCGACGGTCTGTCTGTTTGTGTTGAA
ACAGGTTTGTTCAACGGAGGGGGTCTGCCACTTCAACATGGGGTTGGCTC
AAGAGGGAGGAATGGAAGTTCTGATTGGGCCAAACTGAGACCTTTCGGGA
GGTTACGCGCGTATCTCATTTCTCTGCGCTCGGCGTTGAGTGTAGTTTGA
AAGCATTATGCCCCTTTCTTATCCACCGCCCCCCCACCCCTATCCTGTCT
TGTCCTAGACGAAACACGGCCGAAATTCTTGTGGCGGAGCAACCCGTACA
CACAACAACCCGCACAGACCGTGGTACAGCGAGCGTACAGCGCGTTCGCG
GTACGGGTTCTCGACGAGAAGGGAAAGCGGCGGGTGGTGCCCGCGCTCGA
GTCGAGCGAGGGCGTCCTGTGCGTGGAGATGCGGATCAGGCTTTATCCAG
ACGGGTTGATGAACGGCCTCCTGGCTCAGCTTATCAGGGTACGGCTTGTG
GGGTGGTCGACGACAACAGGACACACTACAATATTTTCTGGGGGGGTACG
AAGATTTGGATAGAGAAGGATCTTATATCTGAGGAGATCACGCAAAGGGT
ACAACCTCCCAAACGTCCAATGGCGATCCCCTCTTTTCGCTCAACGGGGA
TTGTCAAGTTGTTGTTGGCTTCGTCAAGAGAGTCGGCTCGCACGTGGGAC
TTGCTTGGTCCGTGACGAAAACGCCGTAGGGGTTGTGTCAGAACAGCTCC
AACGCCCGCCATCTTTGCAACACTTCTTGCCCTGTTCGTTGCTGATGCCC
TACTGTACCGGAATAGTACCTTGCCCCTCCGCCTGGCGCCCCTTGCTTGT
TTCCCGGTATTGTAGGTTGTGCCCACCGTCGCGATATTTGTGCTTCGGGC
CATTGCTCGGCACACAAACACCATCACATGTTCGTGTCGGCCAACAACAA
ATTATCTCGACCGTCAGACGGGTCCACCGATGGATCTACCGACACATACA
TGTGATCGACTGTTTTGGGAGGAATGATCGATATTTCAGTGGTAACACCG
AGTTTCCGTGTTATTGTTGGTTTTTTGGTTAGGTACGTGGGATCGGTCAC
CAGAACTTGGATAACTCCGCGGTGCAGCTGCAGGGGGCCTTCCTGAGGCA
CTGGCTCACCCCTTCGCCTGCCCACCGGAACGCGGTGATGATCGCGGCTG
GAACCGGTCCTAACCAAAGAGAGTGTGTAAGTTTGGAGAAAACCGACCTC
GGCGCGTGCACGTCCCTGGTCCTTCGAGTCTACCGGTTTGATTGCCTGAC
AGGAACCGACCCCCCGCCAATAGTGCGCCGAGAGGAGTTTTGCGCTGCCG
CCTACCATGAAATAGTACCGCAAATTTGGCGGTTGCCGGTAGTGTCGATG
CAACAGCGGCGCAGGACCGCCCGCAATGGAAGCTTAGGTTGTCCTCGCGT
CGCACTTGCAGACCATGACGTGTCGGTGCTGAAATCCGTTCCCTCCGCCC
CCGCCCTTTTCTGTGGCTCTCGTCACAGGCGTATTGACTTCGGTCTGCGA
ATTATTTTATGTACCCCCTTCGCTGCTGTTGATCATTCGGGATGGGTCTC
TTCCAAACACGAGCGAGGTTTGCGGTTGCAGCAGGGTTATTTCCAGTGAG
ACGACGTTCTCCGATTGGTTAAAAAACGTTGGAGCACAAGAGCGTAACAA
AGTATCGGCATGACCTCCAGTCTAGGGGGGACACGATCTGATGAATTGCA
GAGCTGGTTCTTTGCACGAATGTATAACGTAGCGCTGTTTCCTTAACGGC
AGTCCTACTGCAACTCCAGGAGGAGGTCTCAAGTACCAAGTCGTGGATAC
GAAAGTTATGATAGTGCTACGTGATAGTTCGCGCACATCATGTTACTGCT
GGTGTGAAAAAGCGGCCTGAAATTTTGTTCTTCCTCACGACCCGGGAGAC
CTTCGTATTGTCGTGCTGGTTCCTCTTGCATTTCTTGCTTACCCTAACCT
GCGCACGAATACACCCGCCGAAGTCACATCAGCGTGGCGGGGGTGCACAC
AAGGCTGGTGCTCCTGTGGCAGAACAACGTCGAGGCCGACCGCTATTGCA
CGGACGAACCCACAGCTGTGCAGGTCAGCGTGGACAGGCGCCGCGCAACT
CTGACGGCTATCTACATGGTGATGTCCACGAGAATTCATCACCAGAATTG
ACCCCAAGTACACGAGCTCACCTTAGTCTCGTGGCACTGATTGGCGCTGG
AAAAGCCCCACGCCGCTTCCCGCACAAGCCCCTCTCTTCTGCTGGAGTTT
TCTCGGTTTTCGCGGAGCAGCAGTCGACCGACCCAAGGATTTTTTGGCGT
GGGTTGTCTACCCCATTGCACAACTGTCGCGGGACTTGTGCGAGTCCCTC
GGAAACCACCAGCGGAATCGATCACACAACTTGCGCGTGCCTGCCTATAG
CATTGTTTCAGTTTTCTCTCGTGAGTAAATCTGCACAAAACTAGCGAAGT
CGCTACCCCACCACCGAACAACAGGCTAAAGTGAACGGGCTGTTGGAGGT
CACAGCTCTGATAAGCGGTGACGTCACCCGTTGCAACATCCCCGGTAACA
CCTTCCGCCGCGCCATTGCCCGGCCCATGTCGAAGGGGGCCACCGTGGGC
CTCGTCTCGGGGCGAGCGAGAGGTCGACAGCGACACAGGGGACACCAAGC
ACGACTACACCGCAGAGCACGCCGCCTTCCCGGCCAACCTGCCCTACCTC
CGGTCCGTCCGCGAGCTGTCGCGCGTTTCGGAGGAAGACCCAACCCACAC
CCGATGGAGCAAGAGACCCCATAGCCTTGGTTTGTTTACCAGCGGCGTCA
GCAGGGACCTGGGGGCCGGCGCGGTGGCGAAGACCTTAGTCGCGAGAACA
ATATCGGTGACGATGTTCCGCGGTCCGCGAGCGACGCCGCCGCCGACACG
GGTAAAGCTGGGAGGAACCGTCAGCATGGAGTCGGCGGCGGCGGCGGCGG
CGGCTGGCACAGCGGAAGGTTATTTGTTCGAGTAGCGGCACGGCCAGAAA
TCCTAGAAGCACGTCTATTGAAAGTGGCGCCCATACCTGGTCGGAGGGGG
ACGCGGGGCAAGGGCAGAAGAGCAGCAGCCACAACGACGGCATACCCAGG
GGCACCCTGATCCTGGTCGCAGAGGGAGTGGGGGTGGGCATTTGGTCGAC
ACGGACTGGGGCAGCACCAGGCGCAAGAACCCCGCTCGAAATTCCACCGG
TGGCCCGAGCGGTGGCAGTGGCGACGGCCTAGGAGGAAACAGCGCGCGGA
GCGACATCCATGTCGCCGATAGCATTCGGGCGGCGGGCCTGGACCGTGGA
CGCTGGTCTAAGAAGAAGTCTCGGGAAAGAAAGTTAAAGCTCTTCAGCTA
TGCCGAGGATGAAGGTGGAGGTGGTGGTGGCGGCGGTTGCGGTGGCGGTG
ACACAAGCAAGCCCACCGCCCTCCGGTTCCGCTCTTCTTTCCGGCCGAAG
ATCGGTACGGAGTATGATGTCGCGGACGATTTCTCGGGCACCGGGCAAGG
GCGACAACCAAAGGCTTTTGGGGCACGGAGAAAGGGGAGGCGATGGGCTT
CGAGGGACACGTCAGCGATGTGA
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Coding sequence (CDS) from alignment at Scaffold_211:25338..29260-

>EsuBft2953_2a-0001 ID=EsuBft2953_2a-0001|Name=EsuBft2953_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1356bp|location=Sequence derived from alignment at Scaffold_211:25338..29260- (Ectocarpus subulatus male Bft15b)
ATGCGTGTCATCGTCATCGGATGCTGCAGCGAGGAGCTAGACAAGTTGCT
AGATTTGCCCAGATTGGCTATTTCTGCTCAAACTGTTTCAGGGCGGTATC
GCGTCGGGCGGTGGGCTCTGNAGGATATCGAACAAACCGTGGTACAGCGA
GCGTACAGCGCGTTCGCGGTACGGGTTCTCGACGAGAAGGGAAAGCGGCG
GGTGGTGCCCGCGCTCGAGTCGAGCGAGGGCGTCCTGTGCGTGGAGATGC
GGATCAGGCTTTATCCAGACGGGTTGATGAACGGCCTCCTGGCTCAGCTT
ATCAGGGTACGTGGGATCGGTCACCAGAACTTGGATAACTCCGCGGTGCA
GCTGCAGGGGGCCTTCCTGAGGCACTGGCTCACCCCTTCGCCTGCCCACC
GGAACGCGGTGATGATCGCGGCTGGAACCGGTCCTAACCAAAGAGAGTGT
GCTAAAGTGAACGGGCTGTTGGAGGTCACAGCTCTGATAAGCGGTGACGT
CACCCGTTGCAACATCCCCGGGGACACCAAGCACGACTACACCGCAGAGC
ACGCCGCCTTCCCGGCCAACCTGCCCTACCTCCGGTCCGTCCGCGAGCTG
TCGCGCGTTTCGGAGGAAGACCCAACCCACACCCGATGGAGCAAGAGACC
CCATAGCCTTGGTTTGTTTACCAGCGGCGTCAGCAGGGACCTGGGGGCCG
GCGCGGTGGCGAAGACCTTAGTCGCGAGAACAATATCGGTGACGATGTTC
CGCGGTCCGCGAGCGACGCCGCCGCCGACACGGGTAAAGCTGGGAGGAAC
CGTCAGCATGGAGTCGGCGGCGGCGGCGGCGGCGGCTGGCACAGCGGAAG
AAGAGCAGCAGCCACAACGACGGCATACCCAGGGGCACCCTGATCCTGGT
CGCAGAGGGAGTGGGGGTGGGCATTTGGTCGACACGGACTGGGGCAGCAC
CAGGCGCAAGAACCCCGCTCGAAATTCCACCGGTGGCCCGAGCGGTGGCA
GTGGCGACGGCCTAGGAGGAAACAGCGCGCGGAGCGACATCCATGTCGCC
GATAGCATTCGGGCGGCGGGCCTGGACCGTGGACGCTGGTCTAAGAAGAA
GTCTCGGGAAAGAAAGTTAAAGCTCTTCAGCTATGCCGAGGATGAAGGTG
GAGGTGGTGGTGGCGGCGGTTGCGGTGGCGGTGACACAAGCAAGCCCACC
GCCCTCCGGTTCCGCTCTTCTTTCCGGCCGAAGATCGGTACGGAGTATGA
TGTCGCGGACGATTTCTCGGGCACCGGGCAAGGGCGACAACCAAAGGCTT
TTGGGGCACGGAGAAAGGGGAGGCGATGGGCTTCGAGGGACACGTCAGCG
ATGTGA
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