EsuBft2930_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2930_3a-0001
Unique NameEsuBft2930_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:1112200..1112833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2930_3
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length57
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2930_3aEsuBft2930_3aEctocarpus subulatus male Bft15bgeneScaffold_242 1112200..1112833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2930_3a-0001EsuBft2930_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 1112470..1112676 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2930_3a-0001-exonEsuBft2930_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 1112200..1112375 -
EsuBft2930_3a-0001-exonagat-exon-84937Ectocarpus subulatus male Bft15bexonScaffold_242 1112434..1112833 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2930_3a-0001-exonagat-three_prime_utr-11744Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 1112200..1112375 -
EsuBft2930_3a-0001-exonagat-three_prime_utr-11745Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 1112434..1112469 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2930_3a-0001-cdsEsuBft2930_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 1112470..1112676 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2930_3a-0001-exonagat-five_prime_utr-7469Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 1112677..1112833 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2930_3a-0001 ID=EsuBft2930_3a-0001|Name=EsuBft2930_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=576bp|location=Sequence derived from alignment at Scaffold_242:1112200..1112833- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAAAAGCCTGCATATCATCGAAATATTTGGAGGCTCCTCATTGGCTGAGG
CACGTAATAGCCCATATCTTCCCAGCGAATCCTTCAATCGAATTCCGGCC
ACGAGGATTTGTTCCTTTGCTCGTGGGGGTCACTATAATACTGCGTTTGT
CAACATTATGTACAAAATTCGTCTGGCAGGAGTGGTTGAATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTACCAACACCAAACATACCAGGAAACCAGCTAACACGATACAAACTGAA
CGCTATGCCCTACCTACCATGCACCAGGTGTACCATTCTCTTCTACTACT
GTAAGCATCACTGATACGCTACCCCAAAGGGTCAAATAAGTTTTTTTTTG
GTTTGAAAAACGAGTGATGTACTGCTGTAGCCTTCTTTCCATCTTCCATG
ATTTTACATCAATATTATTTATTTCTCCTTAAATTCCTAAAACCAGCAAG
CTGTCAATAGACACTGCGCCGTGTCCCCTGTGAAGGTTACATCTTACAGT
ACACGACACTACGGAGGGATTCTCCC
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protein sequence of EsuBft2930_3a-0001

>EsuBft2930_3 ID=EsuBft2930_3|Name=EsuBft2930_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=68bp
MYKIRLAGVVEXXXXXXXXXXXXXXXXXXXXLPTPNIPGNQLTRYKLNAM
PYLPCTRCTILFYYCKHH
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mRNA from alignment at Scaffold_242:1112200..1112833-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2930_3a-0001 ID=EsuBft2930_3a-0001|Name=EsuBft2930_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=634bp|location=Sequence derived from alignment at Scaffold_242:1112200..1112833- (Ectocarpus subulatus male Bft15b)
GAAAAGCCTGCATATCATCGAAATATTTGGAGGCTCCTCATTGGCTGAGG
CACGTAATAGCCCATATCTTCCCAGCGAATCCTTCAATCGAATTCCGGCC
ACGAGGATTTGTTCCTTTGCTCGTGGGGGTCACTATAATACTGCGTTTGT
CAACATTATGTACAAAATTCGTCTGGCAGGAGTGGTTGAATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTACCAACACCAAACATACCAGGAAACCAGCTAACACGATACAAACTGAA
CGCTATGCCCTACCTACCATGCACCAGGTGTACCATTCTCTTCTACTACT
GTAAGCATCACTGATACGCTACCCCAAAGGGTCAAATAAGTTTTTTTTTG
GTAGTTGCTAAAAAACGGCGTAAGACACCTACTGCCCGTGAAATTCAAAA
ATCTATAGGTTTGAAAAACGAGTGATGTACTGCTGTAGCCTTCTTTCCAT
CTTCCATGATTTTACATCAATATTATTTATTTCTCCTTAAATTCCTAAAA
CCAGCAAGCTGTCAATAGACACTGCGCCGTGTCCCCTGTGAAGGTTACAT
CTTACAGTACACGACACTACGGAGGGATTCTCCC
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Coding sequence (CDS) from alignment at Scaffold_242:1112200..1112833-

>EsuBft2930_3a-0001 ID=EsuBft2930_3a-0001|Name=EsuBft2930_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=207bp|location=Sequence derived from alignment at Scaffold_242:1112200..1112833- (Ectocarpus subulatus male Bft15b)
ATGTACAAAATTCGTCTGGCAGGAGTGGTTGAATNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACCAA
CACCAAACATACCAGGAAACCAGCTAACACGATACAAACTGAACGCTATG
CCCTACCTACCATGCACCAGGTGTACCATTCTCTTCTACTACTGTAAGCA
TCACTGA
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