EsuBft2927_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2927_4a-0001
Unique NameEsuBft2927_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_437contigScaffold_437:23144..23362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LU83
ProteomeIdEsuBft2927_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length21
Hectar predicted targeting categoryother localisation
Evalue7.4e-24
EggNOG OGs2CMBY@1|root,2QPXR@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameFHY3
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007602,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009639,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0104004,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
DescriptionMULE transposase domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2927_4aEsuBft2927_4aEctocarpus subulatus male Bft15bgeneScaffold_437 23144..23362 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2927_4a-0001-exonEsuBft2927_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_437 23144..23362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2927_4a-0001-cdsEsuBft2927_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_437 23144..23362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2927_4a-0001EsuBft2927_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_437 23144..23362 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2927_4a-0001 ID=EsuBft2927_4a-0001|Name=EsuBft2927_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=219bp|location=Sequence derived from alignment at Scaffold_437:23144..23362- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAGTTCAGGTGTGTGCCTCAGCTTTTGTCGTTGGCGAAGCTCGT
AGGGAAGTTCAACATCCTCATCGCCAAGTACCCGCAGACGGAGAAGTACA
CCCGTGTGGCATACGACGACCGCGCACGGTGGGCGGAACACGTGTCGCCT
CTGGCATTCTCTGTGGGTTTGAGGACGACATCAAGAGTTGAAGGTGCGTT
CAAGGGTCATCTGCCATGA
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protein sequence of EsuBft2927_4a-0001

>EsuBft2927_4 ID=EsuBft2927_4|Name=EsuBft2927_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=72bp
MDEFRCVPQLLSLAKLVGKFNILIAKYPQTEKYTRVAYDDRARWAEHVSP
LAFSVGLRTTSRVEGAFKGHLP
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mRNA from alignment at Scaffold_437:23144..23362-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2927_4a-0001 ID=EsuBft2927_4a-0001|Name=EsuBft2927_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=219bp|location=Sequence derived from alignment at Scaffold_437:23144..23362- (Ectocarpus subulatus male Bft15b)
ATGGACGAGTTCAGGTGTGTGCCTCAGCTTTTGTCGTTGGCGAAGCTCGT
AGGGAAGTTCAACATCCTCATCGCCAAGTACCCGCAGACGGAGAAGTACA
CCCGTGTGGCATACGACGACCGCGCACGGTGGGCGGAACACGTGTCGCCT
CTGGCATTCTCTGTGGGTTTGAGGACGACATCAAGAGTTGAAGGTGCGTT
CAAGGGTCATCTGCCATGA
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Coding sequence (CDS) from alignment at Scaffold_437:23144..23362-

>EsuBft2927_4a-0001 ID=EsuBft2927_4a-0001|Name=EsuBft2927_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=219bp|location=Sequence derived from alignment at Scaffold_437:23144..23362- (Ectocarpus subulatus male Bft15b)
ATGGACGAGTTCAGGTGTGTGCCTCAGCTTTTGTCGTTGGCGAAGCTCGT
AGGGAAGTTCAACATCCTCATCGCCAAGTACCCGCAGACGGAGAAGTACA
CCCGTGTGGCATACGACGACCGCGCACGGTGGGCGGAACACGTGTCGCCT
CTGGCATTCTCTGTGGGTTTGAGGACGACATCAAGAGTTGAAGGTGCGTT
CAAGGGTCATCTGCCATGA
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