EsuBft2914_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2914_5a-0001
Unique NameEsuBft2914_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:527217..527457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2914_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length24
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2914_5aEsuBft2914_5aEctocarpus subulatus male Bft15bgeneScaffold_630 527217..527457 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2914_5a-0001-exonEsuBft2914_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 527217..527457 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2914_5a-0001-cdsEsuBft2914_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 527217..527375 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2914_5a-0001-exonagat-five_prime_utr-7414Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 527376..527457 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2914_5a-0001EsuBft2914_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 527217..527375 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2914_5a-0001 ID=EsuBft2914_5a-0001|Name=EsuBft2914_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=241bp|location=Sequence derived from alignment at Scaffold_630:527217..527457- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTAAGGAACACGCACACATATAACGAGGAAAAGGTATCCAAGAGCCCGA
AGAGGTACACCTAAAAATCCCTGCAGCACCGTATGCGTGCCCAAAAACTG
AACTGCACGTCCGTCCCACCATTCGACTACAGTAGCATCACCCCCTCCCT
GTCCCACTCTATACCAAAACGGAAGATTGCCGACTACAGCATACTGCTGT
CTGAAGTGCTGTCTGTACACAAACACCATGGTAGGCATTAA
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protein sequence of EsuBft2914_5a-0001

>EsuBft2914_5 ID=EsuBft2914_5|Name=EsuBft2914_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=52bp
MRAQKLNCTSVPPFDYSSITPSLSHSIPKRKIADYSILLSEVLSVHKHHG
RH
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mRNA from alignment at Scaffold_630:527217..527457-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2914_5a-0001 ID=EsuBft2914_5a-0001|Name=EsuBft2914_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=241bp|location=Sequence derived from alignment at Scaffold_630:527217..527457- (Ectocarpus subulatus male Bft15b)
TCTAAGGAACACGCACACATATAACGAGGAAAAGGTATCCAAGAGCCCGA
AGAGGTACACCTAAAAATCCCTGCAGCACCGTATGCGTGCCCAAAAACTG
AACTGCACGTCCGTCCCACCATTCGACTACAGTAGCATCACCCCCTCCCT
GTCCCACTCTATACCAAAACGGAAGATTGCCGACTACAGCATACTGCTGT
CTGAAGTGCTGTCTGTACACAAACACCATGGTAGGCATTAA
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Coding sequence (CDS) from alignment at Scaffold_630:527217..527457-

>EsuBft2914_5a-0001 ID=EsuBft2914_5a-0001|Name=EsuBft2914_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=159bp|location=Sequence derived from alignment at Scaffold_630:527217..527457- (Ectocarpus subulatus male Bft15b)
ATGCGTGCCCAAAAACTGAACTGCACGTCCGTCCCACCATTCGACTACAG
TAGCATCACCCCCTCCCTGTCCCACTCTATACCAAAACGGAAGATTGCCG
ACTACAGCATACTGCTGTCTGAAGTGCTGTCTGTACACAAACACCATGGT
AGGCATTAA
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