EsuBft2914_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2914_4a-0001
Unique NameEsuBft2914_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:529579..531015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIC6
ProteomeIdEsuBft2914_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2880.D7FIC6|-
Length50
Hectar predicted targeting categoryother localisation
Evalue7.65e-26
EggNOG OGs2EJXG@1|root,2SPZB@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2914_4aEsuBft2914_4aEctocarpus subulatus male Bft15bgeneScaffold_630 529579..531015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2914_4a-0001EsuBft2914_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 529667..530501 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2914_4a-0001-exonEsuBft2914_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 529579..529828 +
EsuBft2914_4a-0001-exonagat-exon-65345Ectocarpus subulatus male Bft15bexonScaffold_630 530433..530619 +
EsuBft2914_4a-0001-exonagat-exon-65344Ectocarpus subulatus male Bft15bexonScaffold_630 530949..531015 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2914_4a-0001-exonagat-five_prime_utr-7413Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 529579..529666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2914_4a-0001-cdsEsuBft2914_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 529667..529828 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2914_4a-0001-exonagat-three_prime_utr-11641Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 530502..530619 +
EsuBft2914_4a-0001-exonagat-three_prime_utr-11642Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 530949..531015 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2914_4a-0001 ID=EsuBft2914_4a-0001|Name=EsuBft2914_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=504bp|location=Sequence derived from alignment at Scaffold_630:529579..531015+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCGTCGACGGGTGGTGCAGCCGGACCGGACGGGGGTGGTTCCGCCGGAG
GAAGTGGCAGCATCACGGAGCGCAAGGGCCCACACTGCATGATGCGGCTC
GTTGGGATCCTGTGCGAAGACTCCATCCGCCCACTTGTCATCAACAGCCG
CTTGCAGGCGACCCGGCAGGAGCTGGACACCTCAGCAGTTGGGCCGCGGA
AACACTCGTGGACAGAGGTCACCGACCGCTTCCGAGACCCTCGCCACCAT
ATGAGAAAAATCGTGGACGACGAACAAGTGAGTCAGTCACGTCAACCCGA
ACATCATCCAGCAACCTAACATCTCGGCGGAAAAGATCACCAAGATGTGG
TCTGCGGCAAAGGCGAAATGGAACACGCCTAATGCCAACTGGAAGAGTGA
ATCCGGCAACACCAGCCATGGCTTTCATTTTGCCAAGGGGACACGGACAC
GTACATTCTCGGTTGCGCAATCGAGAAATACCCCGAGCTTGACCAAGTGT
GCAA
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protein sequence of EsuBft2914_4a-0001

>EsuBft2914_4 ID=EsuBft2914_4|Name=EsuBft2914_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=76bp
MMRLVGILCEDSIRPLVINSRLQATRQELDTSAVGPRKHSWTEVTDRFRD
PRHHMRKIVDDEQVSQSRQPEHHPAT
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mRNA from alignment at Scaffold_630:529579..531015+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2914_4a-0001 ID=EsuBft2914_4a-0001|Name=EsuBft2914_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1437bp|location=Sequence derived from alignment at Scaffold_630:529579..531015+ (Ectocarpus subulatus male Bft15b)
TTCGTCGACGGGTGGTGCAGCCGGACCGGACGGGGGTGGTTCCGCCGGAG
GAAGTGGCAGCATCACGGAGCGCAAGGGCCCACACTGCATGATGCGGCTC
GTTGGGATCCTGTGCGAAGACTCCATCCGCCCACTTGTCATCAACAGCCG
CTTGCAGGCGACCCGGCAGGAGCTGGACACCTCAGCAGTTGGGCCGCGGA
AACACTCGTGGACAGAGGTCACCGACCGCTTCCGAGACCCTCGCCACCAT
GTGCGTGCTGGGGGTAGGGGGTTGATTGGCACGGATCGGACGAGAACGTT
GTACAAAAACAGTTGCCGAAGTGTATGTTGACAACACATGCCGTTCAGTG
ATAGTTATTTTTAGGCATGGTATTCAACACCTCATAACGTCCACGGACGA
TCGCGCCATCGTTTTAGGTAAAATGCCACTAGGTATCCAACCCCAAGAGC
GGGTCAACCTGCTGTTGACGTCTACCGGTAACTTAAGTAGTTGTTGCTGA
CGCCGACGACCATACTGCTGTAGATATTGCTGTAGTTGCTTCGTTGCCTA
TTATAGTGAAAAACATTGAAAACGCGCTGAATTTTGTCAAAAGAATGCAC
AGAAAGCCAGACAATATTTTACGCCAGAAGAAAATAACAGGCCGGGAAAC
GACCGACATTGGCCCTTCCCGCAAAAGAGGTGGATTCCCCCCGTTCTTTT
TTTGTTTCGTATCGAAATCGAGTTCAATTTCTCGCACGTCCGGGGGGCGT
CATCTTTGTAGGTAGGTATAAAGAACACGTGTATGATCTGCGTTGCCCCT
TCCCTCGCTCCCTCGCTGGATGTCTGACCTATGGGTGCTGTGGACGTTTT
TCAGATGAGAAAAATCGTGGACGACGAACAAGTGAGTCAGTCACGTCAAC
CCGAACATCATCCAGCAACCTAACATCTCGGCGGAAAAGATCACCAAGAT
GTGGTCTGCGGCAAAGGCGAAATGGAACACGCCTAATGCCAACTGGAAGA
GTGAATCCGGCAACACCAGCCATGGCTTTCATTTTGCCAAGGTAAGAGAT
GGGTGACGTAGGGCTGGGTATAAAACAGCGTCTGTTTTCTGCAGGAACCT
TGGGCGATTTTGTGGCCGTGGCGTCAATTGTGCCGATCCTACTTCAGCGT
GTAAGTGCTGCTACGGTCGGAGTTTTGATATTGCACTTGGGGTTGTCGAT
AGTGTTGTAAGACGTACTCCCGGGATGGCGTCCACCTTGAGGCCTGATTG
AAAAGGATTGTCTGCACCATGAACTTTTATCATGTATTTTGAAGCAAGAC
CAAACACATTTCCAATTGTTCCATACAGACCCTCCCCGCCCGCGCTTTGC
GCTTTATTTTTTTTCAACAGGGGACACGGACACGTACATTCTCGGTTGCG
CAATCGAGAAATACCCCGAGCTTGACCAAGTGTGCAA
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Coding sequence (CDS) from alignment at Scaffold_630:529579..531015+

>EsuBft2914_4a-0001 ID=EsuBft2914_4a-0001|Name=EsuBft2914_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=231bp|location=Sequence derived from alignment at Scaffold_630:529579..531015+ (Ectocarpus subulatus male Bft15b)
ATGATGCGGCTCGTTGGGATCCTGTGCGAAGACTCCATCCGCCCACTTGT
CATCAACAGCCGCTTGCAGGCGACCCGGCAGGAGCTGGACACCTCAGCAG
TTGGGCCGCGGAAACACTCGTGGACAGAGGTCACCGACCGCTTCCGAGAC
CCTCGCCACCATATGAGAAAAATCGTGGACGACGAACAAGTGAGTCAGTC
ACGTCAACCCGAACATCATCCAGCAACCTAA
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