EsuBft2914_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2914_3a-0001
Unique NameEsuBft2914_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:532412..533202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4792.ETI53028
ProteomeIdEsuBft2914_3
Protein domainsIPR027806
Protein domainsPTHR22930
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl4776|Peronosporales
Length79
Evalue9.32e-31
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptionnuclease activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2914_3aEsuBft2914_3aEctocarpus subulatus male Bft15bgeneScaffold_630 532412..533202 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2914_3a-0001-exonEsuBft2914_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 532412..533202 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2914_3a-0001-exonagat-three_prime_utr-11640Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 532412..532431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2914_3a-0001-cdsEsuBft2914_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 532432..533202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2914_3a-0001EsuBft2914_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 532432..533202 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2914_3a-0001 ID=EsuBft2914_3a-0001|Name=EsuBft2914_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=791bp|location=Sequence derived from alignment at Scaffold_630:532412..533202- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGACAAGAGCACCGATGGCGTTTTCTCGTGGGTCGTCGCCGCCGT
GGATGGTCTGTTCATCAAGGCCAAGGCTCCGTGTGCGAAAGAGACCAAAA
ACGNCGCTCCGTGTGCGAAAGAGACCAAAAACGTCATCACGTACTACTCT
GGCAGCAAGTCCGCGTACGGCATCAACGTGCAAGCGATGTGCACCGTCAA
CTACCGGTTTTGCGCAATGCCGGCGATTTCTCCAGGGTCGACGAACGACT
GGGTGGCATGGAATCGATCTTCCCTCGCCAAGGCCGTCGCCCGCTTGCCC
GCCGGATTTCACATCATTGGTGACGCCGCCTACCCCATCGGAGAAAAGCT
TCTGACTCCGTACCCTGGGAGGCAACTGCCGGCGGGCGAGGACTCGTTCA
ACTTCCACCTGAGCCAGCTTCGTGTCAAGATCGAGCAGAGCTTCGGCATC
CTGGTTTCGACTTGGGGCATTCTGTGGACACCTCTCCGCATGCAGCTCGG
AGGACGCGGGGATCTCATCACAGCTCTTCTTCATCTGCACAACTTCCTGC
AAGACGAGAAGGTAGCGCCGATCCAGCTTTCAGAGGAGGACTCCCGCAGC
GGACTCAACCGGCCGGCCCTCTGTGCTACCCAGCGCACCTTGCCGGATGG
CTGGGGAACGGAGCCGGCTCCTTCGAGGAGCGGTGAGACCCCGGCCCGAG
CGGCTATCCGCAAGGCCCTGGAGTTGAAGAAGCAGCGGAGGCCGGACTAC
AACCTCCAGAGGAATTCGTAAGGACGTATCCAGCTCTGGCG
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protein sequence of EsuBft2914_3a-0001

>EsuBft2914_3 ID=EsuBft2914_3|Name=EsuBft2914_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=256bp
MQDKSTDGVFSWVVAAVDGLFIKAKAPCAKETKNXAPCAKETKNVITYYS
GSKSAYGINVQAMCTVNYRFCAMPAISPGSTNDWVAWNRSSLAKAVARLP
AGFHIIGDAAYPIGEKLLTPYPGRQLPAGEDSFNFHLSQLRVKIEQSFGI
LVSTWGILWTPLRMQLGGRGDLITALLHLHNFLQDEKVAPIQLSEEDSRS
GLNRPALCATQRTLPDGWGTEPAPSRSGETPARAAIRKALELKKQRRPDY
NLQRNS
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mRNA from alignment at Scaffold_630:532412..533202-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2914_3a-0001 ID=EsuBft2914_3a-0001|Name=EsuBft2914_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=791bp|location=Sequence derived from alignment at Scaffold_630:532412..533202- (Ectocarpus subulatus male Bft15b)
ATGCAGGACAAGAGCACCGATGGCGTTTTCTCGTGGGTCGTCGCCGCCGT
GGATGGTCTGTTCATCAAGGCCAAGGCTCCGTGTGCGAAAGAGACCAAAA
ACGNCGCTCCGTGTGCGAAAGAGACCAAAAACGTCATCACGTACTACTCT
GGCAGCAAGTCCGCGTACGGCATCAACGTGCAAGCGATGTGCACCGTCAA
CTACCGGTTTTGCGCAATGCCGGCGATTTCTCCAGGGTCGACGAACGACT
GGGTGGCATGGAATCGATCTTCCCTCGCCAAGGCCGTCGCCCGCTTGCCC
GCCGGATTTCACATCATTGGTGACGCCGCCTACCCCATCGGAGAAAAGCT
TCTGACTCCGTACCCTGGGAGGCAACTGCCGGCGGGCGAGGACTCGTTCA
ACTTCCACCTGAGCCAGCTTCGTGTCAAGATCGAGCAGAGCTTCGGCATC
CTGGTTTCGACTTGGGGCATTCTGTGGACACCTCTCCGCATGCAGCTCGG
AGGACGCGGGGATCTCATCACAGCTCTTCTTCATCTGCACAACTTCCTGC
AAGACGAGAAGGTAGCGCCGATCCAGCTTTCAGAGGAGGACTCCCGCAGC
GGACTCAACCGGCCGGCCCTCTGTGCTACCCAGCGCACCTTGCCGGATGG
CTGGGGAACGGAGCCGGCTCCTTCGAGGAGCGGTGAGACCCCGGCCCGAG
CGGCTATCCGCAAGGCCCTGGAGTTGAAGAAGCAGCGGAGGCCGGACTAC
AACCTCCAGAGGAATTCGTAAGGACGTATCCAGCTCTGGCG
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Coding sequence (CDS) from alignment at Scaffold_630:532412..533202-

>EsuBft2914_3a-0001 ID=EsuBft2914_3a-0001|Name=EsuBft2914_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=771bp|location=Sequence derived from alignment at Scaffold_630:532412..533202- (Ectocarpus subulatus male Bft15b)
ATGCAGGACAAGAGCACCGATGGCGTTTTCTCGTGGGTCGTCGCCGCCGT
GGATGGTCTGTTCATCAAGGCCAAGGCTCCGTGTGCGAAAGAGACCAAAA
ACGNCGCTCCGTGTGCGAAAGAGACCAAAAACGTCATCACGTACTACTCT
GGCAGCAAGTCCGCGTACGGCATCAACGTGCAAGCGATGTGCACCGTCAA
CTACCGGTTTTGCGCAATGCCGGCGATTTCTCCAGGGTCGACGAACGACT
GGGTGGCATGGAATCGATCTTCCCTCGCCAAGGCCGTCGCCCGCTTGCCC
GCCGGATTTCACATCATTGGTGACGCCGCCTACCCCATCGGAGAAAAGCT
TCTGACTCCGTACCCTGGGAGGCAACTGCCGGCGGGCGAGGACTCGTTCA
ACTTCCACCTGAGCCAGCTTCGTGTCAAGATCGAGCAGAGCTTCGGCATC
CTGGTTTCGACTTGGGGCATTCTGTGGACACCTCTCCGCATGCAGCTCGG
AGGACGCGGGGATCTCATCACAGCTCTTCTTCATCTGCACAACTTCCTGC
AAGACGAGAAGGTAGCGCCGATCCAGCTTTCAGAGGAGGACTCCCGCAGC
GGACTCAACCGGCCGGCCCTCTGTGCTACCCAGCGCACCTTGCCGGATGG
CTGGGGAACGGAGCCGGCTCCTTCGAGGAGCGGTGAGACCCCGGCCCGAG
CGGCTATCCGCAAGGCCCTGGAGTTGAAGAAGCAGCGGAGGCCGGACTAC
AACCTCCAGAGGAATTCGTAA
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