EsuBft2914_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2914_2a-0001
Unique Name	EsuBft2914_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:537491..538587 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2914_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	109
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2914_2a	EsuBft2914_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 537491..538587 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2914_2a-0001-exon	EsuBft2914_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 537491..538587 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2914_2a-0001-exon	agat-five_prime_utr-7412	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_630 537491..537541 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2914_2a-0001-cds	EsuBft2914_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 537542..537715 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2914_2a-0001-exon	agat-three_prime_utr-11639	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 537716..538587 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2914_2a-0001	EsuBft2914_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 537542..537715 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:537491..538587+
coding sequence from alignment at Scaffold_630:537491..538587+

spliced messenger RNA

>EsuBft2914_2a-0001 ID=EsuBft2914_2a-0001|Name=EsuBft2914_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1097bp|location=Sequence derived from alignment at Scaffold_630:537491..538587+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGCTAATCCCAAAATCTAGCAAAGACAGACTCGGTCCTTGGTCACAAA
AATGCTAGAACCATCAGAAGATCTAAAGGACACGCACACTATTAGCAAGG
AAAGGGTACGCAAGCCCGAGGAGGTACACCTACAATCCCTGCAGCACGTT
TGCGTGCTCACAACTGAACTACACGCCCACGCACTACAATTCGACTACAG
CAGCAGCATCACCCCCCTTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGGGTAGCCTCGCAGCCTGCTAAGGGCCAGGTC
ATGGGTTCGAGTCCCGGCAGAGAGAGTTTTTTTCTCATTAATTAAATCCT
GGTCTAGGATGAAAACGACCCGCTGCAAAGAAGAAAGCTCGTTTGTTAGT
AAACCATAATCGACTTCGTAAGTCGCGAGGGAAGGGATTGCTGTACCCTT
CTCGCGATAAAAATACCTCAGGCATGAACCGCAGGAGGGGGTCCAACCCC
CCCCTCCTATGTGACCCCGGTTGGGTCGTCTAGCTAGTAGAAGTGGAGGA
TAGGGGCCAGCGGGGCAGACGACAGTCCAATGATGGGAGAAAAACAAACA
AAAAAACAAAACATGCAACACCTATAATATTCAGGAAAAAAACGGAATAA
TAATTGACAACACAGTACAAGAGATGTTTGTCCGTGCGCCACGGTTCGAT
GCCGTCCGCATGCTCCGGTTCCGCTGCTCCGGTGCCGCTGTGGCCAGTCC
TAGCACGACCAACTCGACCCGCTCCGCTTCGTACACGCTCTCGTTGCTGT
CCTTCCCAGTCGGTTCCTCGCTTTCTCCCTCGTTGCACTTCGCGTTTTTG
GTCTGAAAATTCTCGCGCCGAAGGGTCAACCACAGCCCAATCCGCTCGTC
ACCACCTGTCCCCTCTTCCTTTGATGGCACAACCAGGTGACGGAGACAGT
ACAGCTCCCTCTAACAAACCTAGGGCATTGTACATAGTGCCCGTCCACCT
GTCTTATGACGTCTGCCTCCGCGCACAAAGATGAGATGGGCATTGCT

protein sequence of EsuBft2914_2a-0001

>EsuBft2914_2 ID=EsuBft2914_2|Name=EsuBft2914_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=58bp
MLEPSEDLKDTHTISKERVRKPEEVHLQSLQHVCVLTTELHAHALQFDYS
SSITPLVX

mRNA from alignment at Scaffold_630:537491..538587+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2914_2a-0001 ID=EsuBft2914_2a-0001|Name=EsuBft2914_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1097bp|location=Sequence derived from alignment at Scaffold_630:537491..538587+ (Ectocarpus subulatus male Bft15b)
GTTGCTAATCCCAAAATCTAGCAAAGACAGACTCGGTCCTTGGTCACAAA
AATGCTAGAACCATCAGAAGATCTAAAGGACACGCACACTATTAGCAAGG
AAAGGGTACGCAAGCCCGAGGAGGTACACCTACAATCCCTGCAGCACGTT
TGCGTGCTCACAACTGAACTACACGCCCACGCACTACAATTCGACTACAG
CAGCAGCATCACCCCCCTTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGGGTAGCCTCGCAGCCTGCTAAGGGCCAGGTC
ATGGGTTCGAGTCCCGGCAGAGAGAGTTTTTTTCTCATTAATTAAATCCT
GGTCTAGGATGAAAACGACCCGCTGCAAAGAAGAAAGCTCGTTTGTTAGT
AAACCATAATCGACTTCGTAAGTCGCGAGGGAAGGGATTGCTGTACCCTT
CTCGCGATAAAAATACCTCAGGCATGAACCGCAGGAGGGGGTCCAACCCC
CCCCTCCTATGTGACCCCGGTTGGGTCGTCTAGCTAGTAGAAGTGGAGGA
TAGGGGCCAGCGGGGCAGACGACAGTCCAATGATGGGAGAAAAACAAACA
AAAAAACAAAACATGCAACACCTATAATATTCAGGAAAAAAACGGAATAA
TAATTGACAACACAGTACAAGAGATGTTTGTCCGTGCGCCACGGTTCGAT
GCCGTCCGCATGCTCCGGTTCCGCTGCTCCGGTGCCGCTGTGGCCAGTCC
TAGCACGACCAACTCGACCCGCTCCGCTTCGTACACGCTCTCGTTGCTGT
CCTTCCCAGTCGGTTCCTCGCTTTCTCCCTCGTTGCACTTCGCGTTTTTG
GTCTGAAAATTCTCGCGCCGAAGGGTCAACCACAGCCCAATCCGCTCGTC
ACCACCTGTCCCCTCTTCCTTTGATGGCACAACCAGGTGACGGAGACAGT
ACAGCTCCCTCTAACAAACCTAGGGCATTGTACATAGTGCCCGTCCACCT
GTCTTATGACGTCTGCCTCCGCGCACAAAGATGAGATGGGCATTGCT

Coding sequence (CDS) from alignment at Scaffold_630:537491..538587+

>EsuBft2914_2a-0001 ID=EsuBft2914_2a-0001|Name=EsuBft2914_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=174bp|location=Sequence derived from alignment at Scaffold_630:537491..538587+ (Ectocarpus subulatus male Bft15b)
ATGCTAGAACCATCAGAAGATCTAAAGGACACGCACACTATTAGCAAGGA
AAGGGTACGCAAGCCCGAGGAGGTACACCTACAATCCCTGCAGCACGTTT
GCGTGCTCACAACTGAACTACACGCCCACGCACTACAATTCGACTACAGC
AGCAGCATCACCCCCCTTGTCNNN