EsuBft2877_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2877_4a-0001
Unique NameEsuBft2877_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:144157..145448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2877_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length102
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2877_4aEsuBft2877_4aEctocarpus subulatus male Bft15bgeneScaffold_499 144157..145448 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2877_4a-0001-exonagat-exon-72467Ectocarpus subulatus male Bft15bexonScaffold_499 144157..144737 -
EsuBft2877_4a-0001-exonagat-exon-72468Ectocarpus subulatus male Bft15bexonScaffold_499 144952..145318 -
EsuBft2877_4a-0001-exonEsuBft2877_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 145375..145448 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2877_4a-0001-exonagat-three_prime_utr-11506Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 144157..144710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2877_4a-0001-cdsEsuBft2877_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 144711..144737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2877_4a-0001EsuBft2877_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 144711..145448 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2877_4a-0001 ID=EsuBft2877_4a-0001|Name=EsuBft2877_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1022bp|location=Sequence derived from alignment at Scaffold_499:144157..145448- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCTGCGCCGATGGTTGAAGCGGCCTCATCATCTGTGCCGCCTGTG
GAAGCGTCCGCAGCTGGTGTGGTGGGGCGGAGCGTCAGTGGTGGGCGAGG
AGGTTGAGGCTCAAAGAGGAGGGCAGCCATCAGAGTTGGTGGTAGACAAC
ACATTGCCATCATCACCAGCGGCTGGCGAGGAAGCGGAGGAGCGGGCAGA
AGTAAAGCAGACCCCTCCGCGAGCGCCTGCGGTAGACACAGTACAAGCAG
CAGCAGCAGCGGCACCTGACTCGCGCAACAGCACTCTCGCCAGTGGCGGG
AACAATACAAGCAGCACGCCTACGGCCGAGCCGGTGACCGCATCTCGGTC
TGCGGTGGAAGCCGAGACAAGCGGCGGTGGGGGAGGGGGAAAGAGGGTCT
GCGACGGCGGCGGTGGTTCGCGGATCAAGCTGCTTCTACCGGTTCATTGG
CTAACAAGCGGTGCCTAGGAGCCTTTAACATCACTAAGGAGATAGGTTTT
GGTTTGCGTGTACACTTGAGCTGCAGCTGGCATCACTGGCCGGGATCAGA
TGGCCGAGATGGTTTTACTTTTGTACCGTTAGAAAAAGGGGGTGGCAATT
TGGGGACCAGCGCCTGCACAACGCGTTATGCTATCTTCCCGCATTCAGTA
GTCTGCCGGGTTGGAGCACAGTGGCGCTCTTCGGGAAATGTAGTTTCTGT
GCATTCAGGGGCACCCGTCGTCACAGATGGTTGTCTGGTGATGGTGCGTT
TCGGGGGGTCTCATCGCTGCAGAAACAGGGAGGGTGCCAGGTTCCCGTTT
GTCTGCGATTTTTGCTGATCTAGATAAATTTCCTGCCTTTTGTCTGGGCT
TTTCTCATTTTCGTGTTTGTCTGATTTTCTAACACATGGAAGGTGCGGAT
GAAGAGAGTATTGAGCAGAGATCGGGACCATTTATAATTTTGAGACATGA
ACAACGCCCCCAATGTCCCCGAACTACCAAGATGCCAAACCACCGATGAC
GGGGAGAACTATCGCCAAAGAA
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protein sequence of EsuBft2877_4a-0001

>EsuBft2877_4 ID=EsuBft2877_4|Name=EsuBft2877_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=155bp
MRLRRWLKRPHHLCRLWKRPQLVWWGGASVVGEEVEAQRGGQPSELVVDN
TLPSSPAAGEEAEERAEVKQTPPRAPAVDTVQAAAAAAPDSRNSTLASGG
NNTSSTPTAEPVTASRSAVEAETSGGGGGGKRVCDGGGGSRIKLLLPVHW
LTSGA
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mRNA from alignment at Scaffold_499:144157..145448-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2877_4a-0001 ID=EsuBft2877_4a-0001|Name=EsuBft2877_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1292bp|location=Sequence derived from alignment at Scaffold_499:144157..145448- (Ectocarpus subulatus male Bft15b)
ATGAGGCTGCGCCGATGGTTGAAGCGGCCTCATCATCTGTGCCGCCTGTG
GAAGCGTCCGCAGCTGGTGTGGTGGTACAAACCGCAAAAGCAGCATGCGT
GGCAACAATCGGCAGCGTTGGCAGCGGCAGGGGCGGAGCGTCAGTGGTGG
GCGAGGAGGTTGAGGCTCAAAGAGGAGGGCAGCCATCAGAGTTGGTGGTA
GACAACACATTGCCATCATCACCAGCGGCTGGCGAGGAAGCGGAGGAGCG
GGCAGAAGTAAAGCAGACCCCTCCGCGAGCGCCTGCGGTAGACACAGTAC
AAGCAGCAGCAGCAGCGGCACCTGACTCGCGCAACAGCACTCTCGCCAGT
GGCGGGAACAATACAAGCAGCACGCCTACGGCCGAGCCGGTGACCGCATC
TCGGTCTGCGGTGGAAGCCGAGACAAGCGGCGGTGGGGGAGGGGGAAAGA
GGGTCTGCGACGGCGGCGGTGGTTCGCGGATCAAGCTGCTTCTACCGGTA
AGCAAAAAAGCAGGGTGGCAATTTTGTCTGTATTGACCTATCACGGAAAT
GTGGATGTGGCACTGAAGCATGTACGTTGCAATACACTTGATGCTGCACA
TACGGGTCCCACACGTATCCCTCGCACATCCTCTCAACGCATCCCCGGAG
GTGTCGAGTTCATATTTGTTTCTTCTCGTGTCCTTCTCAATTATCTCCTA
TCAAACGACAGGTTCATTGGCTAACAAGCGGTGCCTAGGAGCCTTTAACA
TCACTAAGGAGATAGGTTTTGGTTTGCGTGTACACTTGAGCTGCAGCTGG
CATCACTGGCCGGGATCAGATGGCCGAGATGGTTTTACTTTTGTACCGTT
AGAAAAAGGGGGTGGCAATTTGGGGACCAGCGCCTGCACAACGCGTTATG
CTATCTTCCCGCATTCAGTAGTCTGCCGGGTTGGAGCACAGTGGCGCTCT
TCGGGAAATGTAGTTTCTGTGCATTCAGGGGCACCCGTCGTCACAGATGG
TTGTCTGGTGATGGTGCGTTTCGGGGGGTCTCATCGCTGCAGAAACAGGG
AGGGTGCCAGGTTCCCGTTTGTCTGCGATTTTTGCTGATCTAGATAAATT
TCCTGCCTTTTGTCTGGGCTTTTCTCATTTTCGTGTTTGTCTGATTTTCT
AACACATGGAAGGTGCGGATGAAGAGAGTATTGAGCAGAGATCGGGACCA
TTTATAATTTTGAGACATGAACAACGCCCCCAATGTCCCCGAACTACCAA
GATGCCAAACCACCGATGACGGGGAGAACTATCGCCAAAGAA
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Coding sequence (CDS) from alignment at Scaffold_499:144157..145448-

>EsuBft2877_4a-0001 ID=EsuBft2877_4a-0001|Name=EsuBft2877_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=468bp|location=Sequence derived from alignment at Scaffold_499:144157..145448- (Ectocarpus subulatus male Bft15b)
ATGAGGCTGCGCCGATGGTTGAAGCGGCCTCATCATCTGTGCCGCCTGTG
GAAGCGTCCGCAGCTGGTGTGGTGGGGCGGAGCGTCAGTGGTGGGCGAGG
AGGTTGAGGCTCAAAGAGGAGGGCAGCCATCAGAGTTGGTGGTAGACAAC
ACATTGCCATCATCACCAGCGGCTGGCGAGGAAGCGGAGGAGCGGGCAGA
AGTAAAGCAGACCCCTCCGCGAGCGCCTGCGGTAGACACAGTACAAGCAG
CAGCAGCAGCGGCACCTGACTCGCGCAACAGCACTCTCGCCAGTGGCGGG
AACAATACAAGCAGCACGCCTACGGCCGAGCCGGTGACCGCATCTCGGTC
TGCGGTGGAAGCCGAGACAAGCGGCGGTGGGGGAGGGGGAAAGAGGGTCT
GCGACGGCGGCGGTGGTTCGCGGATCAAGCTGCTTCTACCGGTTCATTGG
CTAACAAGCGGTGCCTAG
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