EsuBft2847_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2847_3a-0001
Unique NameEsuBft2847_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_103contigScaffold_103:304664..305551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2847_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length79
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2847_3aEsuBft2847_3aEctocarpus subulatus male Bft15bgeneScaffold_103 304664..305551 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2847_3a-0001-exonagat-exon-109210Ectocarpus subulatus male Bft15bexonScaffold_103 304664..305387 -
EsuBft2847_3a-0001-exonEsuBft2847_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_103 305482..305551 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2847_3a-0001-exonagat-three_prime_utr-11371Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_103 304664..305169 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2847_3a-0001-cdsEsuBft2847_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_103 305170..305387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2847_3a-0001EsuBft2847_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_103 305170..305551 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2847_3a-0001 ID=EsuBft2847_3a-0001|Name=EsuBft2847_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=794bp|location=Sequence derived from alignment at Scaffold_103:304664..305551- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGGGAGCATTGCGCTACGGATGTTCGGGACTGTGGGTGGTGGAGG
GTCTTCTGGATCGAGTGGGGGTGGGGCGACTCCTGCGTGTTCCGCCATGC
GACTGGGGGCGGCAAGGGTGGCGGCGGCGGTGGGGGTCGCGCTTCGGGTG
GAGGGGGAGCCTCGGGCGCCGCGACCGATGGCGGAAGCGGCTCCTCGGCG
TTGGTCGTCCGCCGGGGAGATGGCAGCAACTGAGGACACGGGCTCTGCCT
TTCGGCGGGGCCAACTCCACAGTCGTGTGGGAGCGTAGATCAGACAGCGG
GGCCGGGTTCCAGAGCGCTTGGGGCCGCCGCGTTGGCGGCGGCGGGCGTG
GGTGTCGGTCGAGGGGCGTGTGTGCCCGGGGCTGTCTCTTCGTTGCGACC
AGGTGATGTCTCGTTTAGGTCGATAGCGGGTTCGCGTGAACTTTGCGAAT
GGCGATCTCGTGTGTCTGCTTTGGCAGCGGTGAGTTCACCCTCCGATATG
GGTGTGGGTCTTAGTGAGGTGGCTTCTTCTGGTTCCGCCTTGCTTAGACA
GTGTGGGGGGCGTGTTGAAGTGCTCGTGGCGGCCGGTGGTGCCGGCTTCT
TTGCGCCCCATGTCAATGTTGCGTCGGTTCGTGAATTTTTTGGGGTCTCG
AAACGTTTTCCGCAAATTGACAACCTCCTCCGCGTGTTGTGTCCTGGCGC
GCCGGTCGATGTCGCGCCGGGGGGGTGTCTAGACGCCGAATTAAAATACG
GCAACCATTCCAGCATTTTACCATACACTCCGCAGATCATTGAC
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protein sequence of EsuBft2847_3a-0001

>EsuBft2847_3 ID=EsuBft2847_3|Name=EsuBft2847_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=95bp
MSGSIALRMFGTVGGGGSSGSSGGGATPACSAMRLGAARVAAAVGVALRV
EGEPRAPRPMAEAAPRRWSSAGEMAATEDTGSAFRRGQLHSRVGA
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mRNA from alignment at Scaffold_103:304664..305551-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2847_3a-0001 ID=EsuBft2847_3a-0001|Name=EsuBft2847_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=888bp|location=Sequence derived from alignment at Scaffold_103:304664..305551- (Ectocarpus subulatus male Bft15b)
ATGTCCGGGAGCATTGCGCTACGGATGTTCGGGACTGTGGGTGGTGGAGG
GTCTTCTGGATCGAGTGGGGGTAAGAGACGGCGGGGGGACTCCCGCTCCG
CGGGTGGGGACTCCAAACGCCGGTCGAAAGTGTGTTTCGAATATCGCGAC
TCCCAAACATGCAGGTGGGGCGACTCCTGCGTGTTCCGCCATGCGACTGG
GGGCGGCAAGGGTGGCGGCGGCGGTGGGGGTCGCGCTTCGGGTGGAGGGG
GAGCCTCGGGCGCCGCGACCGATGGCGGAAGCGGCTCCTCGGCGTTGGTC
GTCCGCCGGGGAGATGGCAGCAACTGAGGACACGGGCTCTGCCTTTCGGC
GGGGCCAACTCCACAGTCGTGTGGGAGCGTAGATCAGACAGCGGGGCCGG
GTTCCAGAGCGCTTGGGGCCGCCGCGTTGGCGGCGGCGGGCGTGGGTGTC
GGTCGAGGGGCGTGTGTGCCCGGGGCTGTCTCTTCGTTGCGACCAGGTGA
TGTCTCGTTTAGGTCGATAGCGGGTTCGCGTGAACTTTGCGAATGGCGAT
CTCGTGTGTCTGCTTTGGCAGCGGTGAGTTCACCCTCCGATATGGGTGTG
GGTCTTAGTGAGGTGGCTTCTTCTGGTTCCGCCTTGCTTAGACAGTGTGG
GGGGCGTGTTGAAGTGCTCGTGGCGGCCGGTGGTGCCGGCTTCTTTGCGC
CCCATGTCAATGTTGCGTCGGTTCGTGAATTTTTTGGGGTCTCGAAACGT
TTTCCGCAAATTGACAACCTCCTCCGCGTGTTGTGTCCTGGCGCGCCGGT
CGATGTCGCGCCGGGGGGGTGTCTAGACGCCGAATTAAAATACGGCAACC
ATTCCAGCATTTTACCATACACTCCGCAGATCATTGAC
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Coding sequence (CDS) from alignment at Scaffold_103:304664..305551-

>EsuBft2847_3a-0001 ID=EsuBft2847_3a-0001|Name=EsuBft2847_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=288bp|location=Sequence derived from alignment at Scaffold_103:304664..305551- (Ectocarpus subulatus male Bft15b)
ATGTCCGGGAGCATTGCGCTACGGATGTTCGGGACTGTGGGTGGTGGAGG
GTCTTCTGGATCGAGTGGGGGTGGGGCGACTCCTGCGTGTTCCGCCATGC
GACTGGGGGCGGCAAGGGTGGCGGCGGCGGTGGGGGTCGCGCTTCGGGTG
GAGGGGGAGCCTCGGGCGCCGCGACCGATGGCGGAAGCGGCTCCTCGGCG
TTGGTCGTCCGCCGGGGAGATGGCAGCAACTGAGGACACGGGCTCTGCCT
TTCGGCGGGGCCAACTCCACAGTCGTGTGGGAGCGTAG
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