Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 7668.SPU_007600-tr |
| ProteomeId | EsuBft2832_3 |
| Protein domains | PTHR19446 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | probable rna-directed dna polymerase from transposon x-element os:drosophila melanogaster gn:x- [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 2379 |
| Evalue | 6.29e-26 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39HTU@33154|Opisthokonta,3C3DP@33208|Metazoa,3DJFY@33213|Bilateria |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Ribonuclease H protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2832_3a-0001 ID=EsuBft2832_3a-0001|Name=EsuBft2832_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2379bp|location=Sequence derived from alignment at Scaffold_373:533710..536617+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCCGCAGGAGTGGAAGGATGCCATCATTAAGGTGCTGTACAAGAAGGG
TGACCGTTCGAACTGCAACAACTACAGGGGCATCTCGCTGCTCTCGCATG
TAGGCAAAGTACTCGCCAAGACCATCACCAACCGCCTGAGCGCATTCTGC
GAAGCCAACGAAATCCTCCCGGAGGAACAGTGCGGGTTCCGGCCTGGCCG
ATCCACGGTATGCATGCTGTTCGTTGTGCGCCGACTCCAGGAGCTGGGGC
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NNNNNNNNNATTTTATCGCTCTGCTGACCCTTGGGGTCCATTTTATTTTG
GTATACCTTTTCTAGGGAGTGCTCAAAGAGCGGCTCCCATAGCAAGGAGG
GGACCCGTGAATCATCGCGGTGCCCCCTATCAAACGGTTATCTTACCANA
CAGAAAAACCGTCGCTATCACAGCGGATCACAACGGCCGCACTTATTAGA
AAGGCCAAGGCGAAGACAAGAACGCGAGGAACTACGTTCCCCCGGACAAT
GGTCTCCCAACGCCCCCTACTCCTGCCATTGGTACACAGACTGCAACAGT
TATGCGCCTTTCCCCGCATGGAAAACATGGCCTCTCCCAAGTGCTACAAA
CTGCTACAGCTACTCCGGCAAATTCATCAGCTTGCGCCGGTGATACTGCA
GACTGGCCCTGCTAAGGGCCTTGGTGAGGAGGTCCGCGTGTTGCTCCGTT
GTCGGGACACTCTTGACCGAAATTTCCCCCGACCTAAACAATCCGCGGAT
GAAGTGAAACCGCACGTCCATTTGTTTCG back to topprotein sequence of EsuBft2832_3a-0001 >EsuBft2832_3 ID=EsuBft2832_3|Name=EsuBft2832_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=85bp
MPQEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFC
EANEILPEEQCGFRPGRSTVCMLFVVRRLQELGXX back to topmRNA from alignment at Scaffold_373:533710..536617+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2832_3a-0001 ID=EsuBft2832_3a-0001|Name=EsuBft2832_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2908bp|location=Sequence derived from alignment at Scaffold_373:533710..536617+ (Ectocarpus subulatus male Bft15b)
ATGCCGCAGGAGTGGAAGGATGCCATCATTAAGGTGCTGTACAAGAAGGG
TGACCGTTCGAACTGCAACAACTACAGGGGCATCTCGCTGCTCTCGCATG
TAGGCAAAGTACTCGCCAAGACCATCACCAACCGCCTGAGCGCATTCTGC
GAAGCCAACGAAATCCTCCCGGAGGAACAGTGCGGGTTCCGGCCTGGCCG
ATCCACGGTATGCATGCTGTTCGTTGTGCGCCGACTCCAGGAGCTGGGGC
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NNNNNNNNNATTTTATCGCTCTGCTGACCCTTGGGGTCCATTTTATTTTG
GTATACCTTTTCTAGGTACGTTAGCCTGTGACCACGGAAATTGGCCGAGT
CAAGTGATGGATTAGTACGGAGAGATTGAGACAGAAGGAGGTACTGGATA
GAGAGACCGGGATGGTTTTTAATGTGAAGACAACAACAACAACATATAGC
CGACTAGAACGACCGGTGAAGGCTGTGCACAGCAGTAGCCAAGGACCGAG
GTCATCTTAGCAGAGCGACATGATGACCACGGGCTGCTGCTCTAACGTAT
ACGGTGTAGCTACAGATGATCACCAAGGGCATAAGCGGTGCCAATCAGAA
TGCTGGGTTGATGCACAGGTCGTCGATGACGAATGCATAGATAGTCTAGC
TCGACTATGTCTTTGTATAACGACTTTGGAGAGGTAGGACCGTCCGGAAG
CTTGGCTCCGTGCTAAGCCTCGCACACCAGATCACTTTTACTCCCTGTTT
GCGGCCTACGCCACTTATTTATCGGGTGAGACTGTTTTGGTGATGTATTA
ATTTCACGAGAGGTCGACGACCGTCCTTCACACGGACGAAACAGGGAGTG
CTCAAAGAGCGGCTCCCATAGCAAGGAGGGGACCCGTGAATCATCGCGGT
GCCCCCTATCAAACGGTTATCTTACCANACAGAAAAACCGTCGCTATCAC
AGCGGATCACAACGGCCGCACTTATTAGAAAGGCCAAGGCGAAGACAAGA
ACGCGAGGAACTACGTTCCCCCGGACAATGGTCTCCCAACGCCCCCTACT
CCTGCCATTGGTACACAGACTGCAACAGTTATGCGCCTTTCCCCGCATGG
AAAACATGGCCTCTCCCAAGTGCTACAAACTGCTACAGCTACTCCGGCAA
ATTCATCAGCTTGCGCCGGTGATACTGCAGACTGGCCCTGCTAAGGGCCT
TGGTGAGGAGGTCCGCGTGTTGCTCCGTTGTCGGGACACTCTTGACCGAA
ATTTCCCCCGACCTAAACAATCCGCGGATGAAGTGAAACCGCACGTCCAT
TTGTTTCG back to topCoding sequence (CDS) from alignment at Scaffold_373:533710..536617+ >EsuBft2832_3a-0001 ID=EsuBft2832_3a-0001|Name=EsuBft2832_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=255bp|location=Sequence derived from alignment at Scaffold_373:533710..536617+ (Ectocarpus subulatus male Bft15b)
ATGCCGCAGGAGTGGAAGGATGCCATCATTAAGGTGCTGTACAAGAAGGG
TGACCGTTCGAACTGCAACAACTACAGGGGCATCTCGCTGCTCTCGCATG
TAGGCAAAGTACTCGCCAAGACCATCACCAACCGCCTGAGCGCATTCTGC
GAAGCCAACGAAATCCTCCCGGAGGAACAGTGCGGGTTCCGGCCTGGCCG
ATCCACGGTATGCATGCTGTTCGTTGTGCGCCGACTCCAGGAGCTGGGGC
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