EsuBft2804_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2804_2a-0001
Unique Name	EsuBft2804_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_245	contig	Scaffold_245:16054..17550 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2804_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	149
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2804_2a	EsuBft2804_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_245 16054..17550 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2804_2a-0001-exon	EsuBft2804_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_245 16054..17550 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2804_2a-0001-exon	agat-three_prime_utr-11228	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_245 16054..17350 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2804_2a-0001-cds	EsuBft2804_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_245 17351..17530 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2804_2a-0001-exon	agat-five_prime_utr-7156	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_245 17531..17550 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2804_2a-0001	EsuBft2804_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_245 17351..17530 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_245:16054..17550-
coding sequence from alignment at Scaffold_245:16054..17550-

spliced messenger RNA

>EsuBft2804_2a-0001 ID=EsuBft2804_2a-0001|Name=EsuBft2804_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1497bp|location=Sequence derived from alignment at Scaffold_245:16054..17550- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATCGTCTAGGAACGAGCGTGATGTGTTACTGGTCCCGTGCTGTGATGTAT
GTGTGCCTCTCTCCAGAGCAGAGGCAGAGGCCGCTCCCTCCCGCCGCGTC
GCAACACAATAACAACAACCAACCGATGGACCCACAGAGACCCAATCAAT
ATCTCTCCTCTCGCTTCCTCCGCCGAAAGCTAGCAGCAGCAGTAGTATAG
GGCACACCCTGCTCCCGTCCCGCTCTCGCTGTGTGGTGTGTGCAACACAC
GCTGGTTGGTGGGACTCCCTCTCTCTCCAGAGAAGAAAAGGCGAACAAAA
GGCCGGCAGCGTTGAACAACAACAAACAACGGAGACAACAGCAACAACAT
CATCAGCGATGAATGAACCCCAGACCAACCAAACGTTCCCCGCTTCCTCC
GCCGTCGCCAACAGCAGTATGTGTGTGTGTCCCGCCCCCCTTGTCCATGT
TCCCTGTCTCTGTGTAGTGCGTGTCTTGCCAGTAGCAGCAGCAATGTGTG
CAGCACGGCAGTGCGTCGTGGTTTCTTGCGTGCGTGTAGCTTGTTGCCCA
GAGAAAAACAAAAATGACGACGCCTCCCGGGGATGCGTCCATGTGACATA
TATATTTGCACAAACGGTGTGCTATCTCGAGACACCGACCACGGATTGCA
AAGGTAGCGGTTGGGACAGCTCGGGCAAAACTTGTTGTTGTGCGCAAGTT
TTAGTTTGCAATTTGGTGCCGAGATGGTGAAATGGGCTCGAGTCTGCTGG
GTATTTAGGGCGCGCAGACAGACAGACAGACACCAGACAGACAGCCATGG
AGTAATTTTCACGCCCCTGGGCATGAAAATTATTCTTTTTCTCGTGCGCA
CAGACTCCACACACGATCCCTCTAAACAGCTTTTTTCTTGCGAAACAAAA
CAAAAAGCGTACCCCTAAACGGGCCACACTTTTTCGAAAAAATAACTATT
ATTATCATTATTACCATTCCTCAAAGCTAGACGACAACGGAATGCCACAC
AATCCTCAGCATCTAATCGTGCCATGAGCTTCATCATGGCTCAACCTACG
CGATTAGTTACGGAGATGAGCATGGTATACCGGACAGGCAACGTCGAGTT
TTGTGGACTGCGTTCGCATGCCGATCAAACACACAAGATATATGTCCTTT
GTGTTGCCTTGGGCCTCTGTGCTGTGTTTCTGTGTTTCTTTTTTTCATGA
CCTCCCTACCTACTCTGCTGTGTTGGGTGCCGTGATCTTGCTTTGCTGTT
GCCTTTGTTCTTGTACGTCTGGCTGTCTGCCCATCTGCCGCCTCATTGTC
CTGTCTGCTCCGTTACTCCCATGCCCTGGTGCGTAGTGCCTAATGCTGGT
ACGTTACCGTTTGATTTTTTCTTTGGGCGGGTGTTGGAAGCGCCCTCCTG
TATTTTTTATTTGTTGTTTAATTTTGATCGGTTTCCGAGGGCTCTTTTAT
CGAACGGTCGATGCGATACCTGTTCTTTTCTTTCTATCATATTGTTT

protein sequence of EsuBft2804_2a-0001

>EsuBft2804_2 ID=EsuBft2804_2|Name=EsuBft2804_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=59bp
MCYWSRAVMYVCLSPEQRQRPLPPAASQHNNNNQPMDPQRPNQYLSSRFL
RRKLAAAVV

mRNA from alignment at Scaffold_245:16054..17550-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2804_2a-0001 ID=EsuBft2804_2a-0001|Name=EsuBft2804_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1497bp|location=Sequence derived from alignment at Scaffold_245:16054..17550- (Ectocarpus subulatus male Bft15b)
ATCGTCTAGGAACGAGCGTGATGTGTTACTGGTCCCGTGCTGTGATGTAT
GTGTGCCTCTCTCCAGAGCAGAGGCAGAGGCCGCTCCCTCCCGCCGCGTC
GCAACACAATAACAACAACCAACCGATGGACCCACAGAGACCCAATCAAT
ATCTCTCCTCTCGCTTCCTCCGCCGAAAGCTAGCAGCAGCAGTAGTATAG
GGCACACCCTGCTCCCGTCCCGCTCTCGCTGTGTGGTGTGTGCAACACAC
GCTGGTTGGTGGGACTCCCTCTCTCTCCAGAGAAGAAAAGGCGAACAAAA
GGCCGGCAGCGTTGAACAACAACAAACAACGGAGACAACAGCAACAACAT
CATCAGCGATGAATGAACCCCAGACCAACCAAACGTTCCCCGCTTCCTCC
GCCGTCGCCAACAGCAGTATGTGTGTGTGTCCCGCCCCCCTTGTCCATGT
TCCCTGTCTCTGTGTAGTGCGTGTCTTGCCAGTAGCAGCAGCAATGTGTG
CAGCACGGCAGTGCGTCGTGGTTTCTTGCGTGCGTGTAGCTTGTTGCCCA
GAGAAAAACAAAAATGACGACGCCTCCCGGGGATGCGTCCATGTGACATA
TATATTTGCACAAACGGTGTGCTATCTCGAGACACCGACCACGGATTGCA
AAGGTAGCGGTTGGGACAGCTCGGGCAAAACTTGTTGTTGTGCGCAAGTT
TTAGTTTGCAATTTGGTGCCGAGATGGTGAAATGGGCTCGAGTCTGCTGG
GTATTTAGGGCGCGCAGACAGACAGACAGACACCAGACAGACAGCCATGG
AGTAATTTTCACGCCCCTGGGCATGAAAATTATTCTTTTTCTCGTGCGCA
CAGACTCCACACACGATCCCTCTAAACAGCTTTTTTCTTGCGAAACAAAA
CAAAAAGCGTACCCCTAAACGGGCCACACTTTTTCGAAAAAATAACTATT
ATTATCATTATTACCATTCCTCAAAGCTAGACGACAACGGAATGCCACAC
AATCCTCAGCATCTAATCGTGCCATGAGCTTCATCATGGCTCAACCTACG
CGATTAGTTACGGAGATGAGCATGGTATACCGGACAGGCAACGTCGAGTT
TTGTGGACTGCGTTCGCATGCCGATCAAACACACAAGATATATGTCCTTT
GTGTTGCCTTGGGCCTCTGTGCTGTGTTTCTGTGTTTCTTTTTTTCATGA
CCTCCCTACCTACTCTGCTGTGTTGGGTGCCGTGATCTTGCTTTGCTGTT
GCCTTTGTTCTTGTACGTCTGGCTGTCTGCCCATCTGCCGCCTCATTGTC
CTGTCTGCTCCGTTACTCCCATGCCCTGGTGCGTAGTGCCTAATGCTGGT
ACGTTACCGTTTGATTTTTTCTTTGGGCGGGTGTTGGAAGCGCCCTCCTG
TATTTTTTATTTGTTGTTTAATTTTGATCGGTTTCCGAGGGCTCTTTTAT
CGAACGGTCGATGCGATACCTGTTCTTTTCTTTCTATCATATTGTTT

Coding sequence (CDS) from alignment at Scaffold_245:16054..17550-

>EsuBft2804_2a-0001 ID=EsuBft2804_2a-0001|Name=EsuBft2804_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=180bp|location=Sequence derived from alignment at Scaffold_245:16054..17550- (Ectocarpus subulatus male Bft15b)
ATGTGTTACTGGTCCCGTGCTGTGATGTATGTGTGCCTCTCTCCAGAGCA
GAGGCAGAGGCCGCTCCCTCCCGCCGCGTCGCAACACAATAACAACAACC
AACCGATGGACCCACAGAGACCCAATCAATATCTCTCCTCTCGCTTCCTC
CGCCGAAAGCTAGCAGCAGCAGTAGTATAG