EsuBft2802_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2802_3a-0001
Unique NameEsuBft2802_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:1383782..1385344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog1121935.AQXX01000136_gene4114
ProteomeIdEsuBft2802_3
Protein domainsIPR006626
Protein domainsSignalP-noTM
Protein domainsIPR011050
Protein domainsPF13229
Protein domainsIPR012334
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl1236|Gammaproteobacteria
Length39
Hectar predicted targeting categoryother localisation
Evalue1.88e-24
EggNOG OGsCOG3420@1|root,COG3420@2|Bacteria,1NHJ7@1224|Proteobacteria,1SHNB@1236|Gammaproteobacteria
Ec32 ortholog descriptionputative nosD copper-binding protein
Ec32 orthologEc-20_003120.2
Date last modified2016-06-14
Date creation2016-06-14
DescriptionParallel beta-helix repeats
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2802_3aEsuBft2802_3aEctocarpus subulatus male Bft15bgeneScaffold_630 1383782..1385344 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2802_3a-0001-exonagat-exon-44327Ectocarpus subulatus male Bft15bexonScaffold_630 1383782..1383914 +
EsuBft2802_3a-0001-exonagat-exon-44328Ectocarpus subulatus male Bft15bexonScaffold_630 1384556..1384677 +
EsuBft2802_3a-0001-exonEsuBft2802_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 1385210..1385344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2802_3a-0001-cdsEsuBft2802_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 1383782..1383914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2802_3a-0001EsuBft2802_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 1383782..1385344 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2802_3a-0001 ID=EsuBft2802_3a-0001|Name=EsuBft2802_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=390bp|location=Sequence derived from alignment at Scaffold_630:1383782..1385344+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCTTTGTGGCCGCTACTGCTGTACTACCTCCATCAGGGTAACGA
AGGTATTGAAGTGAAAGAAGGAAGCGTTGACACCCTGATCGAGTACAACG
AGGTGCACATGCAATACGACGAGGAGTCCGGAGGCATCGGAAGCCGTGGT
GACCGGAGCATCATCCGCTACAACCACATTCAAGACACGGACGGCGCGGG
TGTCCGTCTAGGAGGCCATATCGTCGACGGCATTGAGTACGGCGCCAACA
ACCAGGTATACGGAAACACCATGGTCGACTGCCGGGCCTCCGCAGTAAAG
GTCATGGTCGACCCCCAGGGTCAGATCTGCGAGAACGACGTTACACTTCC
TGATGACGTTGACGAGGACGACGTGAGTGTGGAACCCTAG
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protein sequence of EsuBft2802_3a-0001

>EsuBft2802_3 ID=EsuBft2802_3|Name=EsuBft2802_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=129bp
MFALWPLLLYYLHQGNEGIEVKEGSVDTLIEYNEVHMQYDEESGGIGSRG
DRSIIRYNHIQDTDGAGVRLGGHIVDGIEYGANNQVYGNTMVDCRASAVK
VMVDPQGQICENDVTLPDDVDEDDVSVEP
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mRNA from alignment at Scaffold_630:1383782..1385344+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2802_3a-0001 ID=EsuBft2802_3a-0001|Name=EsuBft2802_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1563bp|location=Sequence derived from alignment at Scaffold_630:1383782..1385344+ (Ectocarpus subulatus male Bft15b)
ATGTTCGCTTTGTGGCCGCTACTGCTGTACTACCTCCATCAGGGTAACGA
AGGTATTGAAGTGAAAGAAGGAAGCGTTGACACCCTGATCGAGTACAACG
AGGTGCACATGCAATACGACGAGGAGTCCGGAGGTGAGTCGAAGAGACGA
GGATAGAGGCGTTAGATAGCTCTGCTTTTTCGCACAACGAACGGTTCTCC
GCGAGATATTGATTCGGCGGTCGGTTCGAGGTGAAGCAGATGGGAAAATT
CGACCCGTGAGAGGGTCCTTCGCTAAAGAAGAATCGATCGTTCCGCAGTC
CCTTTTCACAACAAGTCTTTGTAACCCTGGCGGTCTTTGGGGCCACGAGG
GCGCGGATGACTCCGTCGTTTGCTAAGGCTCGAACACGTGACTAGGACAC
ATAGCTGTGGGAGGTAATCGAGAGAATATATTGCTGATGTACATATCTGA
TTTGCATTTTATGATTGCCTCAATCGCGACAGGGTAAACAATCGTTGGCG
CAAGTCTTAGTCAGCCGTGCGGCACTGGTTGAGATGCATCCGTATTTAGC
AAAACCTAACGTAGGAACTCGTCTTCTCTGGGCTATGCCATGCACACTGC
GAGGCATTCCAGAAGCACAAGGGCGTGTTCCCACAGCAGTACAAGCGTTC
CCGATAGCGTGAAACACTTCCGCCTTAGATGCAGTCTTTGCATCAACCTG
CTGCGGCGGGCACTGAAGCAATCGCGAATCACACAAGTAACAGCGACGAA
AAAAATCCCATCGTTGGTGGACAGGCATCGGAAGCCGTGGTGACCGGAGC
ATCATCCGCTACAACCACATTCAAGACACGGACGGCGCGGGTGTCCGTCT
AGGAGGCCATATCGTCGACGGCATTGAGTACGGCGCCAACAACCAGGTGC
TCCTGAAACCTGACCATGTCGAGAATTCTCACTTCATGCGATCGCAAGGC
GCCGCATTTTCTCACATACGTGAATCGCTTGCATATCAGAATTCAAGGGC
TTTGCGAGGGAGGCTCGTCAGAGGAAGTTTCATCACCCGAATAATTACTA
TCGTCACGGGGGTGGGTGTCTGACAGTAGAGAGCTACACCGTTACTGTAA
GGCAGACGGTTCTTTGACGCCCATCCTAGTAGCCGTTCTCAACCGCGAAA
AATCGCACTTCATTGCAAAGACGCACCACCTGTCGACGGCTTTCCCGCCC
CCCCCATAAACCTGGACGACGAGGGTGACGTGGCCGATTTCAGTTTGATG
AAGTGATTTCTGGCCGGAGCAACTTCGCACGCACTAAATTTGACAAGACG
AAATGGTGTCGAGCGAGTCGATATACAACAACAGCAGTGTGTATTTACCC
ATCCATCCCATAGGCGAACTCCTGCCTCCGGTTTCTCATCCGCCGTCTTA
CTATCCGGGCCCCTCGCGCATGCACAAGGTATACGGAAACACCATGGTCG
ACTGCCGGGCCTCCGCAGTAAAGGTCATGGTCGACCCCCAGGGTCAGATC
TGCGAGAACGACGTTACACTTCCTGATGACGTTGACGAGGACGACGTGAG
TGTGGAACCCTAG
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Coding sequence (CDS) from alignment at Scaffold_630:1383782..1385344+

>EsuBft2802_3a-0001 ID=EsuBft2802_3a-0001|Name=EsuBft2802_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=390bp|location=Sequence derived from alignment at Scaffold_630:1383782..1385344+ (Ectocarpus subulatus male Bft15b)
ATGTTCGCTTTGTGGCCGCTACTGCTGTACTACCTCCATCAGGGTAACGA
AGGTATTGAAGTGAAAGAAGGAAGCGTTGACACCCTGATCGAGTACAACG
AGGTGCACATGCAATACGACGAGGAGTCCGGAGGCATCGGAAGCCGTGGT
GACCGGAGCATCATCCGCTACAACCACATTCAAGACACGGACGGCGCGGG
TGTCCGTCTAGGAGGCCATATCGTCGACGGCATTGAGTACGGCGCCAACA
ACCAGGTATACGGAAACACCATGGTCGACTGCCGGGCCTCCGCAGTAAAG
GTCATGGTCGACCCCCAGGGTCAGATCTGCGAGAACGACGTTACACTTCC
TGATGACGTTGACGAGGACGACGTGAGTGTGGAACCCTAG
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