EsuBft2792_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2792_4a-0001
Unique NameEsuBft2792_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:930805..933631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2792_4
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length255
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2792_4aEsuBft2792_4aEctocarpus subulatus male Bft15bgeneScaffold_242 930805..933631 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2792_4a-0001EsuBft2792_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 933461..933631 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2792_4a-0001-exonagat-exon-31359Ectocarpus subulatus male Bft15bexonScaffold_242 930805..930854 -
EsuBft2792_4a-0001-exonagat-exon-31360Ectocarpus subulatus male Bft15bexonScaffold_242 930970..931980 -
EsuBft2792_4a-0001-exonEsuBft2792_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 932136..933631 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2792_4a-0001-exonagat-three_prime_utr-11188Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 930805..930854 -
EsuBft2792_4a-0001-exonagat-three_prime_utr-11189Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 930970..931980 -
EsuBft2792_4a-0001-exonagat-three_prime_utr-11190Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 932136..933460 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2792_4a-0001-cdsEsuBft2792_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 933461..933631 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2792_4a-0001 ID=EsuBft2792_4a-0001|Name=EsuBft2792_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2557bp|location=Sequence derived from alignment at Scaffold_242:930805..933631- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGATTACAAGTTCACCTTTCACGAGATGGAAATGAGTATGAAGCA
TCACATGGATCTCGTGATGAAGGCGAAAAGTGGCTTTCGCTTGATATATG
TTATGTATGTGGTACTGGTGAAGAGTTTGAGTTCCCATATACCGTTGAGG
ACATGGAAAAGGGTAGACTAATGTACAGAGACAGAAAGCAGTCAGCGGCC
GTTACCAAAATACAGCGTCTCTTCAGGATGTATAGAAGCAAGAAGGTGGT
AGATACTATGAGGGCGCTCCCGGACAACTCGTTCCACCCTGACTTTACGA
AAGCCAGGCAAAATATACTGAGTATTGACGCCACGGATTTTGCGCCCGCA
CTCTAACTAGCGGTAATGGAGCATATTGCGAGAGCACGTTGCTTAAAAAG
AAGACCAAAATGCCAGAGGTATTATAGTGCAAACATGCAATGCAGAGTAT
TATCGAGTATTTAACTTGTATTTTGTGATTTATCGCAAGTCCTTGGTGGA
ATGTCGGCACCTCAAATACAAACGGTTAGTAGAGGCCCAAAAAGGGATGC
ATTTACTTCAAGCGCGTCCCAGAAAGCGCCCACCAATGCTGAAGATTTCT
GATTTCTTTCCGCGCGCAAAACGAAAGCAAAAAATAGCTTAGCGTGCCAG
AACCCCCGCACCGACCGCCGAAAAAAAACACACACGCCTGTGGTACATAA
CGCGATGATTCTATGACGAGGAACTATGGATAGCTATAAAAACGAGGTTC
TTAGAAAACGCCAGCAAAAACAAATTGTCCAAATGTTGCCATATAATTAA
GAAAATATTGCCAAATTTGGACACACCTTTTCAAGGGGGTAACCCCCACC
CTAGCGTATACCCCTAAGCACCACTTGAAGCTGGAATATTTCGCTTCTCT
GTTTCTTTTTTTTTCATATCCCGCGTTAATCAGGTTAACCCCCCCCCAGT
CCTAGTCTATCACACTTCTCGGGACCTCGGTCGCTCCTAATTTCTCGCAG
CCCCTTTAGCAGAGCCTTTGGAGGCACTGCTTGGATGACATGCCTGAGTA
TCTGGCACACCCGGCTTCCTATAAGTCTAACTCTAACCCAGCGTTCAGTG
GCAGTATTATTAGCTTCTTGGTACTGGCGAAATAGGCGCCACTACGTTCG
ACTAACGACGTAGCTCAATCATAGAAATGTTTTGTTTCTACGCATTAAAA
CGCCGACAATGCCACGCATCCCATCCCCCTCCGAGTACGTATCCAGCGAG
AGCCAGTGCGACACGTATCTAGCGAGCGACACGGATGTGAGCCAGAGCGA
GGCGCCCCTCTTTCCCACGTGGCATAGATCCACCCAATCCTGGCCGACTT
TCCTTGATTACAGCTTTGAACCTAGGTTTTAAGTCGTGTTCGAGCGCTAG
TCAAGGAAATTCGGCCCTACTAATCGTAAAAATACTCGAAATATGGCCAT
TTTTACATGAAAATGGGGCATAAATTAGCGTATCTGTACTGCCGAGGTGT
CCCCCACATGCGGGCTGTTCGGACGTCCACGGTGGTGAACACATGACAGG
ATGGTCAATATACGAACGGGAGAGGGGGAGCCAAGGGAGTCCAGCGTGCT
GATGGGACGTCCACGGCGGTGAACACAGCAACGGGTGGTGAAAGCACGAG
CGGGGGAGGGTGGTGAATTATACAGACGGATGTGTGCTATGGTAGGCCGA
AGGCTCGTTAAGCACGTGCAGCCACACCTGAACGGTACCAGCGTTTCGAA
AAGAGTAGAAAGCCTTTTTCCCTCGAGGATTGTGTGCTAGTCAGTTGCAT
TGCGTGCACATTTTCCTTCCTGGCACAACTATCGACAAAATGAATTTGGG
AAAACTCAGTGTTGTCAAGATGTTGAATCGCTTTTGAAAAAAAAAAAAAA
AAGCATTTTTCAGCAGCACGCGCGGATTTTACTTTCGAATTGTTGGGTCA
ACCGCAGAACGCATGTACGGGCTGTGAGCAATATCCCCTTTAGCAGTACT
CATACGCCTTGCAGTATGACGAGCTAGGCGGCAACCCCGTAATCTACTAT
TTGTTCCCTCGTCGATACTTTGAAAAACGAATGGTATGGAGGCACTTGCT
TTCCTCTTAATCGCGCTAGCAAACAGCACGATTCAAGATGCCGGTTTTAC
AGTTAACCGCGTAATACATGTACAGATGCCTCCTTCATCAGCACGCTCGG
GTCTTGCGATGTTTTGAATGACCCTGAAACCCTATAATTCACTGTTCGTT
CCCTTGTCGATGTTTTGAAATCATATGTTGTGGGGGGGGCAAAAGATATA
TTCGGGGGGTTGAAGCTTAGGACCACCGCAGGGTGGTCCTAAGCGGTCGC
GAGCACATGCTTTGCACCATGGCGCCGAGTACGCATGCACCACGTACTAG
ATTTCGCATTGCCTACGAAAGGCACGACAAATTGAGGAATGTGTGCTATG
GAAGGCAGAAGGCTTTGTTGCAGACGATGGTCAGTAAATCGAATTTTACA
GACGGATACGGATGTGTGCTATGGAAGGCCGAAGGGTCTGTTGCTGCCTA
TCATGTG
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protein sequence of EsuBft2792_4a-0001

>EsuBft2792_4 ID=EsuBft2792_4|Name=EsuBft2792_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=56bp
MYDYKFTFHEMEMSMKHHMDLVMKAKSGFRLIYVMYVVLVKSLSSHIPLR
TWKRVD
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mRNA from alignment at Scaffold_242:930805..933631-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2792_4a-0001 ID=EsuBft2792_4a-0001|Name=EsuBft2792_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2827bp|location=Sequence derived from alignment at Scaffold_242:930805..933631- (Ectocarpus subulatus male Bft15b)
ATGTACGATTACAAGTTCACCTTTCACGAGATGGAAATGAGTATGAAGCA
TCACATGGATCTCGTGATGAAGGCGAAAAGTGGCTTTCGCTTGATATATG
TTATGTATGTGGTACTGGTGAAGAGTTTGAGTTCCCATATACCGTTGAGG
ACATGGAAAAGGGTAGACTAATGTACAGAGACAGAAAGCAGTCAGCGGCC
GTTACCAAAATACAGCGTCTCTTCAGGATGTATAGAAGCAAGAAGGTGGT
AGATACTATGAGGGCGCTCCCGGACAACTCGTTCCACCCTGACTTTACGA
AAGCCAGGCAAAATATACTGAGTATTGACGCCACGGATTTTGCGCCCGCA
CTCTAACTAGCGGTAATGGAGCATATTGCGAGAGCACGTTGCTTAAAAAG
AAGACCAAAATGCCAGAGGTATTATAGTGCAAACATGCAATGCAGAGTAT
TATCGAGTATTTAACTTGTATTTTGTGATTTATCGCAAGTCCTTGGTGGA
ATGTCGGCACCTCAAATACAAACGGTTAGTAGAGGCCCAAAAAGGGATGC
ATTTACTTCAAGCGCGTCCCAGAAAGCGCCCACCAATGCTGAAGATTTCT
GATTTCTTTCCGCGCGCAAAACGAAAGCAAAAAATAGCTTAGCGTGCCAG
AACCCCCGCACCGACCGCCGAAAAAAAACACACACGCCTGTGGTACATAA
CGCGATGATTCTATGACGAGGAACTATGGATAGCTATAAAAACGAGGTTC
TTAGAAAACGCCAGCAAAAACAAATTGTCCAAATGTTGCCATATAATTAA
GAAAATATTGCCAAATTTGGACACACCTTTTCAAGGGGGTAACCCCCACC
CTAGCGTATACCCCTAAGCACCACTTGAAGCTGGAATATTTCGCTTCTCT
GTTTCTTTTTTTTTCATATCCCGCGTTAATCAGGTTAACCCCCCCCCAGT
CCTAGTCTATCACACTTCTCGGGACCTCGGTCGCTCCTAATTTCTCGCAG
CCCCTTTAGCAGAGCCTTTGGAGGCACTGCTTGGATGACATGCCTGAGTA
TCTGGCACACCCGGCTTCCTATAAGTCTAACTCTAACCCAGCGTTCAGTG
GCAGTATTATTAGCTTCTTGGTACTGGCGAAATAGGCGCCACTACGTTCG
ACTAACGACGTAGCTCAATCATAGAAATGTTTTGTTTCTACGCATTAAAA
CGCCGACAATGCCACGCATCCCATCCCCCTCCGAGTACGTATCCAGCGAG
AGCCAGTGCGACACGTATCTAGCGAGCGACACGGATGTGAGCCAGAGCGA
GGCGCCCCTCTTTCCCACGTGGCATAGATCCACCCAATCCTGGCCGACTT
TCCTTGATTACAGCTTTGAACCTAGGTTTTAAGTCGTGTTCGAGCGCTAG
TCAAGGAAATTCGGCCCTACTAATCGTAAAAATACTCGAAATATGGCCAT
TTTTACATGAAAATGGGGCATAAATTAGCGTATCTGTACTGCCGAGGTAA
AAGTAGGGGTAACCAAGGGCACCCTACATCTAAATTCATACAAAAGATGG
CCCTACTATAGTTTATCCAGGTATTGAAACTTGCGCCGATAAAAAACGAT
GCGAATCACCAACACAATCATGGCCGCCCCCGCCCTTGTTTTTGCGTACA
GGTGTCCCCCACATGCGGGCTGTTCGGACGTCCACGGTGGTGAACACATG
ACAGGATGGTCAATATACGAACGGGAGAGGGGGAGCCAAGGGAGTCCAGC
GTGCTGATGGGACGTCCACGGCGGTGAACACAGCAACGGGTGGTGAAAGC
ACGAGCGGGGGAGGGTGGTGAATTATACAGACGGATGTGTGCTATGGTAG
GCCGAAGGCTCGTTAAGCACGTGCAGCCACACCTGAACGGTACCAGCGTT
TCGAAAAGAGTAGAAAGCCTTTTTCCCTCGAGGATTGTGTGCTAGTCAGT
TGCATTGCGTGCACATTTTCCTTCCTGGCACAACTATCGACAAAATGAAT
TTGGGAAAACTCAGTGTTGTCAAGATGTTGAATCGCTTTTGAAAAAAAAA
AAAAAAAGCATTTTTCAGCAGCACGCGCGGATTTTACTTTCGAATTGTTG
GGTCAACCGCAGAACGCATGTACGGGCTGTGAGCAATATCCCCTTTAGCA
GTACTCATACGCCTTGCAGTATGACGAGCTAGGCGGCAACCCCGTAATCT
ACTATTTGTTCCCTCGTCGATACTTTGAAAAACGAATGGTATGGAGGCAC
TTGCTTTCCTCTTAATCGCGCTAGCAAACAGCACGATTCAAGATGCCGGT
TTTACAGTTAACCGCGTAATACATGTACAGATGCCTCCTTCATCAGCACG
CTCGGGTCTTGCGATGTTTTGAATGACCCTGAAACCCTATAATTCACTGT
TCGTTCCCTTGTCGATGTTTTGAAATCATATGTTGTGGGGGGGGCAAAAG
ATATATTCGGGGGGTTGAAGCTTAGGACCACCGCAGGGTGGTCCTAAGCG
GTCGCGAGCACATGCTTTGCACCATGGCGCCGAGTACGCATGCACCACGT
ACTAGATTTCGCATTGCCTACGAAAGGCACGACAAATTGAGGAATGTGTG
CTATGGAAGGCAGAAGGCTTTGTTGCAGACGATGGTCAGTAAATCGAATT
TTACAGACGGATGTGTGCTATGGTAAGCCCCAAGGCTTTGTTGCAGACGA
TGGTCAGTAAATTGAATTTTACAGACGGATGTGTGCTATGGAAGGACGAA
GGCTCTGTTGCTGCCTGAATTTTACAGACGGATGTGTGCTATGGAAGGCC
GAAGGGTCTGTTGCTGCCTATCATGTG
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Coding sequence (CDS) from alignment at Scaffold_242:930805..933631-

>EsuBft2792_4a-0001 ID=EsuBft2792_4a-0001|Name=EsuBft2792_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=171bp|location=Sequence derived from alignment at Scaffold_242:930805..933631- (Ectocarpus subulatus male Bft15b)
ATGTACGATTACAAGTTCACCTTTCACGAGATGGAAATGAGTATGAAGCA
TCACATGGATCTCGTGATGAAGGCGAAAAGTGGCTTTCGCTTGATATATG
TTATGTATGTGGTACTGGTGAAGAGTTTGAGTTCCCATATACCGTTGAGG
ACATGGAAAAGGGTAGACTAA
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