EsuBft2792_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2792_2a-0001
Unique Name	EsuBft2792_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_242	contig	Scaffold_242:936182..945681 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FUA0
ProteomeId	EsuBft2792_2
Protein domains	SSF52058
Protein domains	G3DSA
Protein domains	PTHR24420
Owner	apollo_admin@sb-roscoff.fr
Note	probable lrr receptor-like serine threonine-protein kinase at4g37250 os:arabidopsis thaliana gn [Automatic annotation]
Nb exon	6
Max annot lvl	2759\|Eukaryota
Length	663
Hectar predicted targeting category	other localisation
Evalue	5.98e-24
EggNOG OGs	COG4886@1\|root,2QQYD@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K04730,ko:K04733
KEGG Pathway	ko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG Module	M00686
GOs	GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
EC	2.7.11.1
Description	protein serine/threonine kinase activity
COG category	S
BRITE	ko00000,ko00001,ko00002,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2792_2a	EsuBft2792_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_242 936182..945681 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2792_2a-0001	EsuBft2792_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_242 936269..945681 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2792_2a-0001-exon	agat-exon-31355	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 936182..936389 +
EsuBft2792_2a-0001-exon	agat-exon-31357	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 942622..942704 +
EsuBft2792_2a-0001-exon	agat-exon-31356	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 942977..943076 +
EsuBft2792_2a-0001-exon	agat-exon-31353	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 943275..943278 +
EsuBft2792_2a-0001-exon	agat-exon-31354	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 943874..944061 +
EsuBft2792_2a-0001-exon	EsuBft2792_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 945602..945681 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2792_2a-0001-exon	agat-five_prime_utr-7131	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_242 936182..936268 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2792_2a-0001-cds	EsuBft2792_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_242 936269..936389 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_242:936182..945681+
coding sequence from alignment at Scaffold_242:936182..945681+

spliced messenger RNA

>EsuBft2792_2a-0001 ID=EsuBft2792_2a-0001|Name=EsuBft2792_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=663bp|location=Sequence derived from alignment at Scaffold_242:936182..945681+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCACGGACTTTTTCGGGGCGCCAAAGCGCGCAAGACCGGCCTAGTCAAGC
CTCCGTCACATTAAATATCAACTCTGCATCAAGTCAAATGTCCCTCCACA
TCCCCGTCGCTGAAACCCCATCGGGCAAGCTCGTTGTACCATCGTGCTCC
AAGGCCGAGGGACCTTTCAAGTGCCTGGAGTGTGCCGGAGCGTTGGTGCT
TAAGCAAGGCACACTCACACACTCACCGTTGGAAGTGCGCCACCGCAGAC
GTGATCGCCAGCAGTTCGAGCTATCCCCGTGCAAGACGAAGCTCACCGTG
ACTGAGGAGCTACGTGGTGGCGGTGAAGCGACAACAAGCGCCAGGGTCCG
GCTGCATCACGAGTACAACCGCGCATCTGCGAACTGCCAATCGATGCCCG
CTTCTGCCATAATGTCGACGGACCGTGACGCATTGGTTGCCCTTTACGAC
GCGACCGACGGGGCGAATTGGAAGAGCAAGCAAAACTGGAATACTGATTT
ACCGCTAGGGCGATGGCGCGGAGTCGAAGCCAACGACCAGGGCCGCGTGG
TGGGACTTGATCTGCCCGACAACAAGCTGCACGGCCACATCCCATCGGAC
CTGGGGCACCTTTCAGCACTTCAAAAGCTCAACCTCTTGTCGAACCAGCT
GATCGGTGAGTGA

protein sequence of EsuBft2792_2a-0001

>EsuBft2792_2 ID=EsuBft2792_2|Name=EsuBft2792_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=191bp
MSLHIPVAETPSGKLVVPSCSKAEGPFKCLECAGALVLKQGTLTHSPLEV
RHRRRDRQQFELSPCKTKLTVTEELRGGGEATTSARVRLHHEYNRASANC
QSMPASAIMSTDRDALVALYDATDGANWKSKQNWNTDLPLGRWRGVEAND
QGRVVGLDLPDNKLHGHIPSDLGHLSALQKLNLLSNQLIGE

mRNA from alignment at Scaffold_242:936182..945681+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2792_2a-0001 ID=EsuBft2792_2a-0001|Name=EsuBft2792_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=9500bp|location=Sequence derived from alignment at Scaffold_242:936182..945681+ (Ectocarpus subulatus male Bft15b)
TCACGGACTTTTTCGGGGCGCCAAAGCGCGCAAGACCGGCCTAGTCAAGC
CTCCGTCACATTAAATATCAACTCTGCATCAAGTCAAATGTCCCTCCACA
TCCCCGTCGCTGAAACCCCATCGGGCAAGCTCGTTGTACCATCGTGCTCC
AAGGCCGAGGGACCTTTCAAGTGCCTGGAGTGTGCCGGAGCGTTGGTGCT
TAAGCAAGGTAAGATATAAAGGTTTTCATTTTGCGCACCACCACCTGTCT
TCCGGCTGATCTGGCGGTGGGGAATCTGCCCTCCACAAGGCAGCGAAGTT
GCTCGTTGACAAGTACTCTTCGCGCTTCATTTTCACGGGGAAGTGTGCTA
CAGGAACACACGAAATCGCACGACAGTACACCGATTGTACAGTAAAGCAG
GAACATCATCGCTACGATGCGCACAAAAACCACTCGGCCGACGTGGCCAT
CTTCCAGAACGACAGCCTTGTTTCTCTCGTGGAGGTATGGGCATCTCACG
CAACCACGGGGGCATCGCTAGCATCACGCAAGCCGTGTGTAGGCGTGAAC
AACGTGGGGAGATTTCGGCTGTAGAAATCCTCAGCAAGCAGGCCACATTG
TTCACCACGGCAGACGCAGTTGAGGTCATTTCCCTTCTCAACCATGAGCC
GGAGGGGTGCTCTTGCAAGCAGTGCCCGGGTTGCGACACCTACCACACCG
GTGAAAGCAGGGAGGAGTGTGATGCGTGTGGTGGGGAGTGGGATGAGTGG
AACTACAAATGGCTCGAGGTGATGAGTCATCGCAGTTTTTTCATAGATCG
CGTGTTTATTCTCCTCGACATGATACCGGCGTGGCGAAAGACTATGCTTC
CCGTGCTAGAAGACATAGCGAGTACTCGTTTTGAGGAACAGGTGCACCGT
GCGTTAGATAGGTGTGAGATGTCCCTCGCCACTCGGGATTTGAACGCATA
CGCTGCTTTTCGTCCCGGCGGCGTAGAATGTCTAGCAAGGCGACGTTTGG
ACCGGATAAACAAATCGCTCCGCATTCTAGGGCCTCATCTCAACAAGAGA
TTCGCTTTGTTTCTTGTCTGGAGGCTCCAACTTTACAAATGTTTACGAGC
TCGTTCGTACCATAAGGCTGATGAACATTTGGAAACCATCCCCACGTGGA
AGGATGCACACCAATTCAGCGTGTTGGTCGTAGAGTCCGAGGAACGCAGT
CGACAGGACAGAGAGAAGAGAAAACAGTCGGTTCAGAAGCTAGAGTCCGA
CACAACCGTGGTCACTATTGACGACAACACGCTGCTGCGCAACGGCGTGC
TGATGAAAAAGCTTTTCTTCAAGCCTGGTGACAGAATTGACCGTCGCTAC
GGGTGGGTGAGGGCACCCAAAGTGCAATGATACTCCCGGCTCCAGGATGG
TGGAGTGCACGGAAACCGAAAATATAATATTTGTCTGCTACTAGACTTGG
AGGTGGAATAGTTTTTTGTGGTGGTTGCACAAAAGNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATGAAAATTATTCTTT
TTCTCGTGCGCACATACTCCACACACGATCCCTCTAAACAGCTTTTTTTT
TGCAAAACAAAACAAAAAGCGTACCCCTATCGGGCCACATTTTTTCAAAA
AAAAAACTATTCGCACATACTCCACACACGATCCCTCTAAACAGCTTTTT
TTTTGCAAAACAAAACAAAAAGCGTACCCCTATCGGGCCACATTTTTTCA
AAAAAAAAACTATTCGCACATACTCCACACACGATCCCTCTAAACAGCTT
TTTTTTTTTGCAAAAAAAAACAAAAAGCGTACCCCTAACGGGCCACACTT
TTTCAAAAAAAAAAAGTCACTTACATTAAAAAAAAAGCTGTTTAGAGGGA
TCGTGTGTGGAGTATGTGGGCACGAGAAAAAGAATAATAACAGTTTTTTT
TTTGTGAAAAGTGTGTCCCGTTAGGGGTACGCTTTTTGTTTTGTTTTGCA
AAAAAAAAGCTGTTTAGAGGGATCGTGNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCACATACTGCTGTTAGCGACGGCGGAGGAA
GCGGGGAACGTTTGGTTGGTCCGGGGTTCATCGCTGATGATGTTGTTGTT
GTTGTTTCCGTTGTGTGTGGTTGTTGTTGTTCAACGCTGCCGGCCTTTTT
TTCGCCTTTTGTTCTCTGGAGAGAGAGGGAGTCCCACCAACCAGCGTGTG
TTGCACACACCACACAGCGAGAGCGGGACGGGAGCAGGGTGTGCCCTATA
CTACTGCTGCTGCTAGCTTTCGGCGGAGGAAGCGAGAGGAGANNNNNNNN
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NNNNNNNNNNNNNNACCGCCCCCCGTTCTTCTGTAACAGACGCACGAGCC
TACTGCAGGTACTTTTGTGCAACCACCACAAAAAACTATTCCACCTCCAA
CTCTAGTAAACACCATGGATTCCGTCAGGCTTTGTGCAGTCAAGCTTGGC
CACACCGTCGTTGAGCGAAAGATTTCTTCGAAAGAGACCCCGGACGTGTA
TGCGGAGCTTGAACTAATCGCGCATATGCGCGAAGGACAAGACGCGGATA
TTCGTGTTCTCGGACCAGGGGGACATCGCAAAATTGCAAGAGTGGCGTGA
AGGATTTGGAAATAAACCCCGGGAGTGTGTGGCGGCCTTCGTGTGGGACA
GTCTGATATACTACATCAACGAGTCGGCCAAGCCCAAGAGCCTGAAGGAG
TGGGAGCTTTTACTCTCAAAGCAGCAATCCCTGGAGTGAGTCATTTGCTT
CGAACGTATCAAGGAATCGGCAGATGCACGCCCCTGCCTCACATGCCACG
CTATGTGTTGCGCTGATTGCAATTGGAAAGTCTCTCCCGGAATGCCCGGT
CTGCAAAGCCTTCAATATGACAAGCTACGTGCGTAATCGGGGTGTGTATG
CGGCGCAGTTGATTCCACAGCTTGGTATCCCGATGGCCGACGTAAAAAGG
TCGAAGGACATGTGCGCGAGCCAAATCAAGGAGCTGACAGGATACGATCA
TCTAGAAGACCTGATTGACAGCGCCATGTTGGCGGCCGGGGAGAAGGTGT
ACGACGTGAGAGACCAGTTGGTCCTTTCTCAAACTTGATAAACATTTGCA
AATTCCCGTGTGTGCGCCCACCAGCTGATGTCCCCAACATCTGAAAAAAT
TGTCACCTACCCGTCGCACGATAGTGTCTCGAGACTATTGTACATCGGGC
ACTTGTTAGCAGTCAGCTTCTCTGCGCAGGTTTGCACAGCCATTTGCAAC
ATGTTCGACACGACACACTTTGTGTCGCGGATACGTTGGATGTGTCGCAG
ATCATAGCATCACCAATGGCACACTGCTGTTGGAAGAACGCCCTCCACTC
CGAGGCCGACTTCAGATAATCCCACGAATGCACCAACATGTCCTTTTGCA
GTCTTAAATCAGGTGCGCCAAGTACGCTCTCTCCGTGCAGCCGCCGATTG
ACTGTGCAGCAGTGTAGACATCTTCATGTTGGCAGTGTCGTTACTGCTGT
CTCGCACGTAACTTCGCCCATTTTAAACGCCCGGAGGGTTCTTTCAGGAT
GAGGTAGTCTACTTCAACGCTGATTTCCTCGCACACTTCAATACATCAGT
TTTGCAAGAAGCGCCGGCCGGGCACTGCATGATGGGTTGCGCGGCCATTA
TCCAGATGATTTCGGTGTTCGGTGGTATTTTTGCTGACGGTTGCAACGTG
TACAAAGGCGTTTTCTCAGTAAAGATTGGGTGAGAGGGCTACCGAGGCAC
AGAAGGGATCGCCGCTGAGGTATTCGTTGCGAAACGTGACTAAGAACGCT
CAATCCGCCCTATCGCCTGCATGTGTGTTCCCGCAGCCAGGCACACTCAC
ACACTCACCGTTGGAAGTGCGCCACCGCAGACGTGATCGCCAGCAGTTCG
AGCTATCCCCGTGCAAGACGAAGGTATCTTCCTGGTTTTCTATGATCGTA
GATCGAGCGCGCGGGTCGCATGACCAGCGTCTGCACGCGAAGGGTTTGGA
GAAAACGCGATTGTGAGATGGGGGGCACGTGAAAAAAGTATACANTGACC
AGCGTCTGCACGCGAAGGGTTTGGAGAAAACGCGATTGTGAGATGGGGCA
CGTGAAAAAAGTATACGTATCGACAAAATCGACTCACGGATCCCCCTTTA
GACAACACCCCCGACTCAATACTGCTGTCATTCTGTCTTGAGAAGCTCAC
CGTGACTGAGGAGCTACGTGGTGGCGGTGAAGCGACAACAAGCGCCAGGG
TCCGGCTGCATCACGAGTACAACCGCGCATCTGCGAACTGCCAATGTGAG
CCCTTTGTCCTGCAGAGTAGTTTCTTTTGACGCGGACTTCCGCCTCAAAC
AGCTAAAGCATGAGACGCAACCAGCAACCCCGGTCACGGTCGGCGCATGG
CCTGTCTCTATGGTCCCTGGTTCTTTGTATACTTGGGATTTATCGCGTGT
TACGCGACGCGGGCGTCCGCCTCAAACAGCTGTGAGGGATTAGCGATGTG
CAGGCATTAGACGCAATCCGACACACCAACCAACGCTGGCGCGCGGGCTG
TCTCAGCCAGCTCCCTGTGCTTTGATGCTTTCGAGCGTTTGTACATCGGA
CCGGGTTGTTCTTTTTTTTCCGGAAGTGCATTTTTCGGAAGAGCTCGCAC
TTCGCTGCCCAGAGCTCCATCTGACACGGGCATCCGCCGCAAACAGATAA
AACATGAGACGCGACCAGCAACCCCGGTTAAGGTCGGCGTGCCACCTGTC
TCCACTGGAACCTGGCGCTTTGTTTTGCTTTGTTTGTTGACTTGCGAGCG
TGTGTTGCGAATGATGTTTTTTTTTCCAAAACCATATATGTCGGAGAGTT
GGGTCGTTGACTGCGCCGCAGCTGTGCAGCGTATCTGATATTCTGCGAAT
TGACAAGGTTATCTCCGCAAACAGCAGTGAGTGATGAACGGCGTTGAAGA
TGCGACGCAACCAGTCACGCCGGCCACGCGCCTGTCGCTACGGGCTCCTG
TTGGTTTGATGCGAGGGGAGGCTTGCGTCGTCTTTTTCTTCCACTGAACG
TCATTTTTGCGAATATCCCGCAAACTTCCGCACCCGCCCCAGGCCCGCTT
CTGCCATAATGTCGACGGACCGTGACGCATTGGTTGCCCTTTACGACGCG
ACCGACGGGGCGAATTGGAAGAGCAAGCAAAACTGGAATACTGATTTACC
GCTAGGGCGATGGCGCGGAGTCGAAGCCAACGACCAGGGCCGCGTGGTGG
GACTTGATCTGCCCGACAACAAGCTGCACGGTATTTTTATCATGTTTACT
TAATCCCTAGAGCCTGTTGCCGTCTTGCAATATGCTCGACCTTTCCCAAG
AATTCCTTGACAGACATTGGCCCTTTCATAAAATTGCAAGTTTTACAACA
GGCAACAACGTTCTCAATCTCGTACGTACCCGCGTTCTGCACGCGGTCCA
CTCCTGAGTATCCCTCATACGTGAATTCGCCACAGTAAGAGCACGGCGTG
CGCACAATGCTGCTGTACTCGTCAAGGCTAATCGATACCGCAATGTTTCG
TTTCCTAGCTTGCTCATTGAAAGTCCTCCATCTGTACATCAAATCGACTT
TCCTAGCTTCTAAGTACCTCCGGTAAGCGGGGGATCTTCGGTGTCGCTTC
TTGTTCAGAGCTCTGATGCGGCGTATGTCGTACTCTGGAGCATTCACGAC
GATGAATCCGTCCCGCACGGGCCCAGTAGGCTTGGTACTTGGTTTCCTCG
CCGAGATCCATCCGCTGTCCTTCGTTGCACCCATAGCTGATGAACGGCCG
GAAGTGTTGTGTGGTGTGGTGGTGTTTTTGTTGAAAAGAAATGTTCTAGA
CGTTGGCGCGTCTACGGGGTAAAAAATCAAGAACGACCCGGTTTCTAGAA
CACCTCCTCGTCTCTGCGACATGCATCTGGTTGGCTGCAAAGGTGTGAGG
ATGTGCAGTCTTCCGAGATGTCCTAGCTCGAGTTGAATGGCGCCTGTAGT
CCATAAATATTCCCGCACTGATGCAGAAACGTGGATGAACCCCGACGATT
TGTANTTATGTTGGCAATCACTCCTGTGCTTGTTTTCGGACCAACGTCGA
CCTGTTTTTTTCTCGAACCCTCGATGAACGCAACCGTCCCTGACGCGGAT
TGGCACCAGCAGGAGTGCGATGTGCTCCCGGGATTGTTTTTGCAGACGTG
TGTGGGTGTGCGGCAGTGCTTTGCGAGCTGGTAGGCGGAGTTGATCGCTT
TGTGGGGGCTTCGGGGGCACCTCGTGTCAAAAAAAAATTCGCCCCGAATT
TTGACACGTCTTCCAGAAAAATCTGACCTGGAAATTTTGACCCGAAAGAG
GCGGCGTAACCTCTCGGGTCAAAAAAACCGCTCGTGTCAAAATTTCAGGT
CAAAAAAAGCACAGGTGGGAACCCTCGAGCATCTCCGCAGATCTGTTTCG
TCTTCTGGAGAAATCGTGCATGGACGTGTTTTCTATAGGACTGTGCATGG
ACGCGTTGGCAGAACCATTTTTCTAGACGCCGGGGGGTTGATTTTGCTTT
CTTCCGCCAACTTCTTATTTTCTCTTCGTCTGGCGGGCAACATCCCGCCA
GAGATAGGAGATCTTCGACAGCTGCAGAGGCTGTTGCTCAGCAACAACCG
GCTGACAGGTACCTCTTTTATTTTGATGGTTTAATATTTTCCTAGCATTG
ATCCATGGATGAATCTTGCCGAACACCGGTCCACCCATGAAGTAGGACAG
ATATTCTAGGAAAGGGGGGGTTAGATTTTTTGTCCCGCTCAGTTACTCCG
TTCCGCACTTCCGCTTGCAGGCCACATCCCATCGGACCTGGGGCACCTTT
CAGCACTTCAAAAGCTCAACCTCTTGTCGAACCAGCTGATCGGTGAGTGA

Coding sequence (CDS) from alignment at Scaffold_242:936182..945681+

>EsuBft2792_2a-0001 ID=EsuBft2792_2a-0001|Name=EsuBft2792_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=576bp|location=Sequence derived from alignment at Scaffold_242:936182..945681+ (Ectocarpus subulatus male Bft15b)
ATGTCCCTCCACATCCCCGTCGCTGAAACCCCATCGGGCAAGCTCGTTGT
ACCATCGTGCTCCAAGGCCGAGGGACCTTTCAAGTGCCTGGAGTGTGCCG
GAGCGTTGGTGCTTAAGCAAGGCACACTCACACACTCACCGTTGGAAGTG
CGCCACCGCAGACGTGATCGCCAGCAGTTCGAGCTATCCCCGTGCAAGAC
GAAGCTCACCGTGACTGAGGAGCTACGTGGTGGCGGTGAAGCGACAACAA
GCGCCAGGGTCCGGCTGCATCACGAGTACAACCGCGCATCTGCGAACTGC
CAATCGATGCCCGCTTCTGCCATAATGTCGACGGACCGTGACGCATTGGT
TGCCCTTTACGACGCGACCGACGGGGCGAATTGGAAGAGCAAGCAAAACT
GGAATACTGATTTACCGCTAGGGCGATGGCGCGGAGTCGAAGCCAACGAC
CAGGGCCGCGTGGTGGGACTTGATCTGCCCGACAACAAGCTGCACGGCCA
CATCCCATCGGACCTGGGGCACCTTTCAGCACTTCAAAAGCTCAACCTCT
TGTCGAACCAGCTGATCGGTGAGTGA