EsuBft2776_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2776_2a-0001
Unique NameEsuBft2776_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_161contigScaffold_161:105615..106400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2776_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length51
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2776_2aEsuBft2776_2aEctocarpus subulatus male Bft15bgeneScaffold_161 105615..106400 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2776_2a-0001-exonagat-exon-42899Ectocarpus subulatus male Bft15bexonScaffold_161 105615..105783 -
EsuBft2776_2a-0001-exonEsuBft2776_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_161 106051..106400 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2776_2a-0001-exonagat-three_prime_utr-11109Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_161 105615..105783 -
EsuBft2776_2a-0001-exonagat-three_prime_utr-11110Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_161 106051..106241 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2776_2a-0001-cdsEsuBft2776_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_161 106242..106400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2776_2a-0001EsuBft2776_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_161 106242..106400 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2776_2a-0001 ID=EsuBft2776_2a-0001|Name=EsuBft2776_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=519bp|location=Sequence derived from alignment at Scaffold_161:105615..106400- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGGGGAGGCTCACGATGCGTGGCCGCTATTTTGTTTTTTCTGGGC
TGCACACAAATCCCTCCGCCTGTTGCCTGGCACGGAGAATCCCAAGTACA
GATCAGATGTACCGAAGACCTCCCTACCAGTCGAGGGTGCCGCTGTGCTC
AATCGATGAAGCCACTCGTTGCCCTGCTGTGGGTAGCAGCTTGGGCCGTG
AAATGTGAGTTAGCAATAGTTATCGACTGTGTAGACGGCGTGGCCCTGCG
TTTTGAACGCCTCCAGCATCCGACCCGCGTCTCTTGGAGCGCGCCTGGCT
TTTGGGGTGTACCGTACGCAACGGGTCATAGCAGACCATGCTGTGTGCAT
AGTCGAAAGTTTCTTATGGTTTAGCAAATGATGGAGTATTGACTGAATGG
TGGCAACTTGAATCAACACAATCCGTGTACCCTGGTGAGACCGCTGGACG
AAAGGCCGCACATTTTCCAAACCCGCGGAAGTCGACATCCCACACCCCCG
GTCGCCCCGGTGGTCTAGT
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protein sequence of EsuBft2776_2a-0001

>EsuBft2776_2 ID=EsuBft2776_2|Name=EsuBft2776_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=52bp
MAGEAHDAWPLFCFFWAAHKSLRLLPGTENPKYRSDVPKTSLPVEGAAVL
NR
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mRNA from alignment at Scaffold_161:105615..106400-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2776_2a-0001 ID=EsuBft2776_2a-0001|Name=EsuBft2776_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=786bp|location=Sequence derived from alignment at Scaffold_161:105615..106400- (Ectocarpus subulatus male Bft15b)
ATGGCAGGGGAGGCTCACGATGCGTGGCCGCTATTTTGTTTTTTCTGGGC
TGCACACAAATCCCTCCGCCTGTTGCCTGGCACGGAGAATCCCAAGTACA
GATCAGATGTACCGAAGACCTCCCTACCAGTCGAGGGTGCCGCTGTGCTC
AATCGATGAAGCCACTCGTTGCCCTGCTGTGGGTAGCAGCTTGGGCCGTG
AAATGTGAGTTAGCAATAGTTATCGACTGTGTAGACGGCGTGGCCCTGCG
TTTTGAACGCCTCCAGCATCCGACCCGCGTCTCTTGGAGCGCGCCTGGCT
TTTGGGGTGTACCGTACGCAACGGGTCATAGCAGACCATGCTGTGTGCAT
GTGAGAGTCGAAAGTTTCTTATGGTTTAGCAAATNCTACCAGTCGAGGGT
GCCGCTGTGCTCAATCGATGAAGCCACTCGTTGCCCTGCTGTGGGTAGCA
GCTTGGGCCGTGAAATGTGAGTTAGCAATAGTTATCGACTGTGTAGACGG
CGTGGCCCTGCGTTTTGAACGCCTCCAGCATCCGACCCGCGTCTCTTGGA
GCGCGCCTGGCTTTTGGGGTGTACCGTACGCAACGGGTCATAGCAGACCA
TGCTGTGTGCATGTGAGAGTCGAAAGTTTCTTATGGTTTAGCAAATGATG
GAGTATTGACTGAATGGTGGCAACTTGAATCAACACAATCCGTGTACCCT
GGTGAGACCGCTGGACGAAAGGCCGCACATTTTCCAAACCCGCGGAAGTC
GACATCCCACACCCCCGGTCGCCCCGGTGGTCTAGT
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Coding sequence (CDS) from alignment at Scaffold_161:105615..106400-

>EsuBft2776_2a-0001 ID=EsuBft2776_2a-0001|Name=EsuBft2776_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=159bp|location=Sequence derived from alignment at Scaffold_161:105615..106400- (Ectocarpus subulatus male Bft15b)
ATGGCAGGGGAGGCTCACGATGCGTGGCCGCTATTTTGTTTTTTCTGGGC
TGCACACAAATCCCTCCGCCTGTTGCCTGGCACGGAGAATCCCAAGTACA
GATCAGATGTACCGAAGACCTCCCTACCAGTCGAGGGTGCCGCTGTGCTC
AATCGATGA
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