EsuBft2737_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2737_3a-0001
Unique NameEsuBft2737_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:557273..560547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2737_3
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length193
Hectar predicted targeting categorysignal anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2737_3aEsuBft2737_3aEctocarpus subulatus male Bft15bgeneScaffold_630 557273..560547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2737_3a-0001EsuBft2737_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 557367..559668 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2737_3a-0001-exonagat-exon-44700Ectocarpus subulatus male Bft15bexonScaffold_630 557273..557485 +
EsuBft2737_3a-0001-exonagat-exon-44699Ectocarpus subulatus male Bft15bexonScaffold_630 558415..558680 +
EsuBft2737_3a-0001-exonEsuBft2737_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 558753..559236 +
EsuBft2737_3a-0001-exonagat-exon-44698Ectocarpus subulatus male Bft15bexonScaffold_630 559575..560547 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2737_3a-0001-exonagat-five_prime_utr-7024Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 557273..557366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2737_3a-0001-cdsEsuBft2737_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 557367..557485 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2737_3a-0001-exonagat-three_prime_utr-10988Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 559669..560547 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2737_3a-0001 ID=EsuBft2737_3a-0001|Name=EsuBft2737_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1936bp|location=Sequence derived from alignment at Scaffold_630:557273..560547+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAAGCTTCGGTTTCCACCTCTGTCCTTTCGAGTACCCAGCCTTCTGTTTT
TGCAGCCGCTGGTGGTGTGTCCCAAGTTTTCCCGCCGGAACCACATGTTG
CTTATTCCACTTTTCCTCTCACCTCCACCGCCGCTGAGCCTTCTGCTGTT
GGGGCAGACATTGACTTTGACAATACTGGCTCTGTACTGCCACGCTTGCC
TCATGGCTCTGTGCTTGTGGTCAAGCCTGAGGCGACCTCCCTCGCTGGTG
GAGCCGTCTCAACCCCTACCATCCGAGCAACGACCGCTGGCGCCGGCGAG
AGGTCTTCGGCTACCCCCCACTCGGTGCGCCGGCCCCCCTGGCCCCGCTT
TCGACGGCTTCAGTGGCAACTGCGACTTCAGCAGCCCCCGCTGCTTCGGC
GGCCCCCACTGTTTCGGCAGCCCCAACGGCTTCGGCGGCACCCCCGACCT
CGTCGGCACCTCCGCGGCGCCCCCGTTGGGAAGCGGGCGAGGCCAGGTGG
TCGACCTCGACCGCGAAGCGGCTCTTCGGAACCGCAACGCTCGGCTCGAT
GCCGAGTTCAACAAAGAGACTTCTGAACGCCCGGCCAAAATTGCGGTGTA
CCGTGCGCTCCGCGCCACCAACACCGATACCATCTTGGCCTACGCCCAGC
GGAAACAAGCGCAAGAACGGGAAGAGGCCCTGCTGGCCGCCAAGCTCGCC
GACGACCGCCGCCAGGAGGACGCGTTGGTCGCCGAGCAGGCCCGCGCTGA
TCAACAGCGTGAACACGATCTTCGGGTTCGGGCGGGGCGCTCCGTGCCGG
GACCGGCCCCTGCTGCCGCTCCTGCTCCGTCGGCATCGGTGGCTCGCACG
TACGCCGCTGCCGCCTCCAGCCCTATGACTCGGTCTTCATCACGGTCGCG
ACCCGTCACTTTCGAGGCAGGGGACGCTAGATTCACCCAGGCCAGGTTGT
CTGACGTTGCCAGGCTCGGACCGGAGTCTCACCCGGAAGCACGGCGCTCG
GAAGGGCTCTTCTTCCAGGCAAGTAGTCCCGTCCCTTATGGATGCGACGT
TGAGTGATCATTTCCCTATACATGATGATTTTTTTTCTCAGGCCTCGCCC
CTCCCCTCAACTTCGGTTGTTGGTACGGTTTCGGCCCCCCCTATTTCCTC
GGACTCCGGGCGTTTGCGTCGTGTTGCGTTTTCGGACCTTCCCCCGCCTT
TGGCTTGCCCCGTTTCTTCGGAACCCTTTGCAACTTCTGTTCCTTCTGCC
GCATTCAATGCTGTAGACTCCGGATGTGTACGTAGCGTTGAGTTTTCGGA
CTCAGCCTCGGCTTCGGCCGCCCCTGTTTCTTTGGAAACCTCTGCACCCC
GTCGCCTTTCTACCGCTCGCCATGCCGTAGATCCACGACTGATGCAGAAC
CATGGGTTTTCGAACCTCAACCCCCCTTCGGCGCTTGTACCACCTGTGCC
GGGTGTTTCGCGTAGTGTGTTGTCCTCAGACCATGCTTCCACAGCTGCTT
CGGTAGCCGTCGCCGCGCCCCCTGCTATATCCGATGATCGCGCCTTGCCA
CTTTCTTCTGACACGGCACACACTCGTCAAGCATCGATCGATGCGACTGA
AGCAGCTGCTCGTAATGCTCATGTAGGTACAGTATAACGAGCTTAAATCA
CCCTCAACTTGAAAAAGGTTTAGAATGTCGCTACCATGCCCTTCTCCGCT
ACTCTGTTGCCGGGAGGCGGCTATCAGCAGCTTATTCGCACAACAAGGAC
GGCTTTGTCCGATATTTTGCTGTCGTGTGATGAGCAGAGGGAAGGTTTGA
CAGGCATTGATTTTGTGCGTGGATGGGAGTGTCCTCTCGAAAAAAAACTT
CTGAGTGCGATCACCCCTGACAAGCTCTCTACCGCCGATCTCGTCCTTGC
CATTACTGATTACTTTCAGCTAGTGAAACGGAGCTT
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protein sequence of EsuBft2737_3a-0001

>EsuBft2737_3 ID=EsuBft2737_3|Name=EsuBft2737_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=320bp
MLLIPLFLSPPPPLSLLLLGQTLTLTILALYCHACLMALCLWSSLRRPPS
LVEPSQPLPSEQRPLAPARGLRLPPTRCAGPPGPAFDGFSGNCDFSSPRC
FGGPHCFGSPNGFGGTPDLVGTSAAPPLGSGRGQVVDLDREAALRNRNAR
LDAEFNKETSERPAKIAVYRALRATNTDTILAYAQRKQAQEREEALLAAK
LADDRRQEDALVAEQARADQQREHDLRVRAGRSVPGPAPAAAPAPSASVA
RTYAAAASSPMTRSSSRSRPVTFEAGDARFTQARLSDVARLGPESHPEAR
RSEGLFFQASSPVPYGCDVE
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mRNA from alignment at Scaffold_630:557273..560547+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2737_3a-0001 ID=EsuBft2737_3a-0001|Name=EsuBft2737_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3275bp|location=Sequence derived from alignment at Scaffold_630:557273..560547+ (Ectocarpus subulatus male Bft15b)
GAAGCTTCGGTTTCCACCTCTGTCCTTTCGAGTACCCAGCCTTCTGTTTT
TGCAGCCGCTGGTGGTGTGTCCCAAGTTTTCCCGCCGGAACCACATGTTG
CTTATTCCACTTTTCCTCTCACCTCCACCGCCGCTGAGCCTTCTGCTGTT
GGGGCAGACATTGACTTTGACAATACTGGCTCTGTACTGCCACGCTTGCC
TCATGGCTCTGTGGTTGGCCGCACACTGCATTTCGATTACACTGTGCCGG
CCATTCCTCCTTTTTCGTCGCGTAGCAGTCGCACACAAGCCGCCGCTCGT
GCCCAACGACTCCATGACCATCATGCATCCGTTTCAGTGGCATCAGTGCC
TTTGGTTTTGAATTCACATCCATCTGTTCCAGTGGTTTGGACTGCCTCTG
CGGTTCCGACCGCTTCACATGCAACCGTCTCAGTAGTTTCGACTGCCCCC
GTTGCATCTTCTCCTGTCCTTTCGACTGCCGTGGCTGCTTCCCTTGGTCT
TGATGCCCCTGTTAATATAGTTTCGACTACTTCAACTGCAATTTCGGTTG
CTGCCCCACCATCTGCTGCAATAGCTCCCCATATGTCTGGAGCATCTCCC
GCTCCCGCTACCTTTGTCCCCGTAGCTTCCCCATTGCCAGCCCCAGTTTC
GACTGTTTCAAAGGCATTGGCTTCAGTAGCTCCGTCGATGCCTGCAGTTT
CGACTGCCTCTGCTGCATCGATTCCTGTAGCTCCGCCTTTGCCCCCAATG
ATGGCTGTTCCCCGTGTTCGCCCTATGGGCGTCCGGTGTACACATTCGGC
TATCATTAACCCAGCAGTTACCGTGCCAGTAGCTTCGTCTCGGACTGCAT
CCCTCACTGGTGCACGTGTACCCACAGCCGACTCTATGTCTGCCGTGTAG
ACTGCTGTTCCCACGCTAGTTGCGGCTTCGGCTCCTCTAGCAGTAACCTC
GGTTACTCCTGCAGAATCCGCTGCCGATGCGCCTGTTGTTTTGCATAATG
CGGTGCCTCCACCTCCCCTCATGCTCTCCTCCTCACACGAACGTGCAGCC
ACTTCCGCTGCTTATCCCTTCTTAAAATGGCAGAAAACGGCAATCGTCGT
CTTCGCGACCTCCTCCGACAATCTACCATGGTCACCACCCAGCTTGTGGT
CAAGCCTGAGGCGACCTCCCTCGCTGGTGGAGCCGTCTCAACCCCTACCA
TCCGAGCAACGACCGCTGGCGCCGGCGAGAGGTCTTCGGCTACCCCCCAC
TCGGTGCGCCGGCCCCCCTGGCCCCGCTTTCGACGGCTTCAGTGGCAACT
GCGACTTCAGCAGCCCCCGCTGCTTCGGCGGCCCCCACTGTTTCGGCAGC
CCCAACGGCTTCGGCGGCACCCCCGACCTCGTCGGCACCTCCGCGGCGCC
CCCGTTGGGTTTGTTCAATCCTGTGGGACTGCATGACCGACGACTAGCGG
CTGCTGGCCCTCTCCCCCCGGGTTAGCCAGGAAGCGGGCGAGGCCAGGTG
GTCGACCTCGACCGCGAAGCGGCTCTTCGGAACCGCAACGCTCGGCTCGA
TGCCGAGTTCAACAAAGAGACTTCTGAACGCCCGGCCAAAATTGCGGTGT
ACCGTGCGCTCCGCGCCACCAACACCGATACCATCTTGGCCTACGCCCAG
CGGAAACAAGCGCAAGAACGGGAAGAGGCCCTGCTGGCCGCCAAGCTCGC
CGACGACCGCCGCCAGGAGGACGCGTTGGTCGCCGAGCAGGCCCGCGCTG
ATCAACAGCGTGAACACGATCTTCGGGTTCGGGCGGGGCGCTCCGTGCCG
GGACCGGCCCCTGCTGCCGCTCCTGCTCCGTCGGCATCGGTGGCTCGCAC
GTACGCCGCTGCCGCCTCCAGCCCTATGACTCGGTCTTCATCACGGTCGC
GACCCGTCACTTTCGAGGCAGGGGACGCTAGATTCACCCAGGCCAGGTTG
TCTGACGTTGCCAGGTATGCCCAGGTCAACTATCAGGTAGACGGCCGCAA
GGCCGTCATGGATCTAGCGGCTGGCGTGTCCACCGCTATGCCGTTGGCTG
CCTCCGAGGAGGCGAGCTCACCTCGTCTTGGAGGTCGGGCCGAGAGCCGT
TTGCCACGTCGGCGGCGTCCTGCATTGAGGAAGCCAACGGCATAGCGGTG
GACACGCCAGCCGCTAGATCCATGACGGCCTTGCGGCCGTCTACCTGATA
GTTGACCTGGGCATACCTGGCAACGTCAGACAACCTGGCCTGGGTGAATC
TAGCGTCCCCTGCCTCGAAGGTGACGGAGAAGTGGAGGCGGATCGGACTC
AGGCTCGGACCGGAGTCTCACCCGGAAGCACGGCGCTCGGAAGGGCTCTT
CTTCCAGGCAAGTAGTCCCGTCCCTTATGGATGCGACGTTGAGTGATCAT
TTCCCTATACATGATGATTTTTTTTCTCAGGCCTCGCCCCTCCCCTCAAC
TTCGGTTGTTGGTACGGTTTCGGCCCCCCCTATTTCCTCGGACTCCGGGC
GTTTGCGTCGTGTTGCGTTTTCGGACCTTCCCCCGCCTTTGGCTTGCCCC
GTTTCTTCGGAACCCTTTGCAACTTCTGTTCCTTCTGCCGCATTCAATGC
TGTAGACTCCGGATGTGTACGTAGCGTTGAGTTTTCGGACTCAGCCTCGG
CTTCGGCCGCCCCTGTTTCTTTGGAAACCTCTGCACCCCGTCGCCTTTCT
ACCGCTCGCCATGCCGTAGATCCACGACTGATGCAGAACCATGGGTTTTC
GAACCTCAACCCCCCTTCGGCGCTTGTACCACCTGTGCCGGGTGTTTCGC
GTAGTGTGTTGTCCTCAGACCATGCTTCCACAGCTGCTTCGGTAGCCGTC
GCCGCGCCCCCTGCTATATCCGATGATCGCGCCTTGCCACTTTCTTCTGA
CACGGCACACACTCGTCAAGCATCGATCGATGCGACTGAAGCAGCTGCTC
GTAATGCTCATGTAGGTACAGTATAACGAGCTTAAATCACCCTCAACTTG
AAAAAGGTTTAGAATGTCGCTACCATGCCCTTCTCCGCTACTCTGTTGCC
GGGAGGCGGCTATCAGCAGCTTATTCGCACAACAAGGACGGCTTTGTCCG
ATATTTTGCTGTCGTGTGATGAGCAGAGGGAAGGTTTGACAGGCATTGAT
TTTGTGCGTGGATGGGAGTGTCCTCTCGAAAAAAAACTTCTGAGTGCGAT
CACCCCTGACAAGCTCTCTACCGCCGATCTCGTCCTTGCCATTACTGATT
ACTTTCAGCTAGTGAAACGGAGCTT
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Coding sequence (CDS) from alignment at Scaffold_630:557273..560547+

>EsuBft2737_3a-0001 ID=EsuBft2737_3a-0001|Name=EsuBft2737_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=963bp|location=Sequence derived from alignment at Scaffold_630:557273..560547+ (Ectocarpus subulatus male Bft15b)
ATGTTGCTTATTCCACTTTTCCTCTCACCTCCACCGCCGCTGAGCCTTCT
GCTGTTGGGGCAGACATTGACTTTGACAATACTGGCTCTGTACTGCCACG
CTTGCCTCATGGCTCTGTGCTTGTGGTCAAGCCTGAGGCGACCTCCCTCG
CTGGTGGAGCCGTCTCAACCCCTACCATCCGAGCAACGACCGCTGGCGCC
GGCGAGAGGTCTTCGGCTACCCCCCACTCGGTGCGCCGGCCCCCCTGGCC
CCGCTTTCGACGGCTTCAGTGGCAACTGCGACTTCAGCAGCCCCCGCTGC
TTCGGCGGCCCCCACTGTTTCGGCAGCCCCAACGGCTTCGGCGGCACCCC
CGACCTCGTCGGCACCTCCGCGGCGCCCCCGTTGGGAAGCGGGCGAGGCC
AGGTGGTCGACCTCGACCGCGAAGCGGCTCTTCGGAACCGCAACGCTCGG
CTCGATGCCGAGTTCAACAAAGAGACTTCTGAACGCCCGGCCAAAATTGC
GGTGTACCGTGCGCTCCGCGCCACCAACACCGATACCATCTTGGCCTACG
CCCAGCGGAAACAAGCGCAAGAACGGGAAGAGGCCCTGCTGGCCGCCAAG
CTCGCCGACGACCGCCGCCAGGAGGACGCGTTGGTCGCCGAGCAGGCCCG
CGCTGATCAACAGCGTGAACACGATCTTCGGGTTCGGGCGGGGCGCTCCG
TGCCGGGACCGGCCCCTGCTGCCGCTCCTGCTCCGTCGGCATCGGTGGCT
CGCACGTACGCCGCTGCCGCCTCCAGCCCTATGACTCGGTCTTCATCACG
GTCGCGACCCGTCACTTTCGAGGCAGGGGACGCTAGATTCACCCAGGCCA
GGTTGTCTGACGTTGCCAGGCTCGGACCGGAGTCTCACCCGGAAGCACGG
CGCTCGGAAGGGCTCTTCTTCCAGGCAAGTAGTCCCGTCCCTTATGGATG
CGACGTTGAGTGA
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