EsuBft2737_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2737_2a-0001
Unique Name	EsuBft2737_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:565925..566930 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	946362.XP_004988912.1
ProteomeId	EsuBft2737_2
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SignalP-noTM
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	IPR000477
Protein domains	SSF56672
Protein domains	PTHR10178
Protein domains	G3DSA
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_N_REGION
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon 297 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation]
Nb exon	2
Max annot lvl	33154\|Opisthokonta
Length	945
Hectar predicted targeting category	signal peptide
Evalue	3.48e-51
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,39ZVA@33154\|Opisthokonta
Date last modified	2016-06-14
Date creation	2016-06-14
Description	dUTP metabolic process
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2737_2a	EsuBft2737_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 565925..566930 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2737_2a-0001-exon	agat-exon-44697	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 565925..566537 +
EsuBft2737_2a-0001-exon	EsuBft2737_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 566599..566930 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2737_2a-0001-cds	EsuBft2737_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 565925..566537 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2737_2a-0001	EsuBft2737_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 565925..566930 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:565925..566930+
coding sequence from alignment at Scaffold_630:565925..566930+

spliced messenger RNA

>EsuBft2737_2a-0001 ID=EsuBft2737_2a-0001|Name=EsuBft2737_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=945bp|location=Sequence derived from alignment at Scaffold_630:565925..566930+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTGTCCTCGAGTTCTCCGACCGACTTTGGATCTTGTTCGCTTTTT
CCTTTTAAGCTTACAATTCCTCCTGGCCGTGCACCCGTCACGTCTCGCCC
CTACCGCGATAAATCCCCCGGTGGCGAAACAAGTCGACGCCATCCTTGAC
CAATATCTTGCGGCAGATTTGATCCAGCACTCGACCCCGCCTTACTCGAG
CCCTTTGGTAGTCATACCGAAGAAATCTGGTGGTGTTCGCATCACCGTCT
ATTATCGCAAGTTCAACAAGCTTTGTGCTTGGAGTCAGCTTCCGATTCCT
CGAGTTGATGATACTTTGGACAAGTTGTTGAAAGGGCGAATTTATTCCCT
TTTCGACATGAAATCTTCGTTCCACCAAATCACGGTGCACCGCGATACAA
TTCCTTTGACGGCATTCGTGACGTCTTCCGGGCTTTTCGAGTGGTTGAAG
ATGCCCCAAGGCAGTTCGGCTGCCTTTGGGTGGTTTTGCAAAGTTGTCAA
TGAAGTCATCAAAAATTTTCGCGATGTTGCATCGTACGTGGATGATTTGA
TCGTCTTTGATGACACCCCTGCTACTCATGTTGGTACCATGCGCGCCCTC
TTTGAACGCTTGCACTTCCTCGGACACACCACCTCCCCTGACGGCGTTAG
GCCTAACGGTGCCAAGGTTTCGGCCCTCACCAAAATGCCCATGCCCAAGG
ATGTCAAGCAACTACGTTCCCTTCTCGGTGGTCTCAGCTACTACCGTAAG
TTCCTCTCCAACATGGCTAAACGCATTCGACCTCTGAGAACTCTACTCAA
GAAGCAGGAGAAGTTTATCTTCACCCCTTCCATGCAGCAAGCCGTTCGCG
TTTTATTAGCTGAGTTGTCCTCCTGTTTTGGTTTATCCAGCTTGGGATGC
CGTTTTAGACTGCTCACGACCTTTTCATCTTTACTGTTATGCTAG

protein sequence of EsuBft2737_2a-0001

>EsuBft2737_2 ID=EsuBft2737_2|Name=EsuBft2737_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=314bp
MMCPRVLRPTLDLVRFFLLSLQFLLAVHPSRLAPTAINPPVAKQVDAILD
QYLAADLIQHSTPPYSSPLVVIPKKSGGVRITVYYRKFNKLCAWSQLPIP
RVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLK
MPQGSSAAFGWFCKVVNEVIKNFRDVASYVDDLIVFDDTPATHVGTMRAL
FERLHFLGHTTSPDGVRPNGAKVSALTKMPMPKDVKQLRSLLGGLSYYRK
FLSNMAKRIRPLRTLLKKQEKFIFTPSMQQAVRVLLAELSSCFGLSSLGC
RFRLLTTFSSLLLC

mRNA from alignment at Scaffold_630:565925..566930+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2737_2a-0001 ID=EsuBft2737_2a-0001|Name=EsuBft2737_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1006bp|location=Sequence derived from alignment at Scaffold_630:565925..566930+ (Ectocarpus subulatus male Bft15b)
ATGATGTGTCCTCGAGTTCTCCGACCGACTTTGGATCTTGTTCGCTTTTT
CCTTTTAAGCTTACAATTCCTCCTGGCCGTGCACCCGTCACGTCTCGCCC
CTACCGCGATAAATCCCCCGGTGGCGAAACAAGTCGACGCCATCCTTGAC
CAATATCTTGCGGCAGATTTGATCCAGCACTCGACCCCGCCTTACTCGAG
CCCTTTGGTAGTCATACCGAAGAAATCTGGTGGTGTTCGCATCACCGTCT
ATTATCGCAAGTTCAACAAGCTTTGTGCTTGGAGTCAGCTTCCGATTCCT
CGAGTTGATGATACTTTGGACAAGTTGTTGAAAGGGCGAATTTATTCCCT
TTTCGACATGAAATCTTCGTTCCACCAAATCACGGTGCACCGCGATACAA
TTCCTTTGACGGCATTCGTGACGTCTTCCGGGCTTTTCGAGTGGTTGAAG
ATGCCCCAAGGCAGTTCGGCTGCCTTTGGGTGGTTTTGCAAAGTTGTCAA
TGAAGTCATCAAAAATTTTCGCGATGTTGCATCGTACGTGGATGATTTGA
TCGTCTTTGATGACACCCCTGCTACTCATGTTGGTACCATGCGCGCCCTC
TTTGAACGCTTGCGTACGCACAACTTGAAACTCACGCCTCCGAAAGCTAC
TTACTATTGGCGCTACTGAAGCAGACTTCCTCGGACACACCACCTCCCCT
GACGGCGTTAGGCCTAACGGTGCCAAGGTTTCGGCCCTCACCAAAATGCC
CATGCCCAAGGATGTCAAGCAACTACGTTCCCTTCTCGGTGGTCTCAGCT
ACTACCGTAAGTTCCTCTCCAACATGGCTAAACGCATTCGACCTCTGAGA
ACTCTACTCAAGAAGCAGGAGAAGTTTATCTTCACCCCTTCCATGCAGCA
AGCCGTTCGCGTTTTATTAGCTGAGTTGTCCTCCTGTTTTGGTTTATCCA
GCTTGGGATGCCGTTTTAGACTGCTCACGACCTTTTCATCTTTACTGTTA
TGCTAG

Coding sequence (CDS) from alignment at Scaffold_630:565925..566930+

>EsuBft2737_2a-0001 ID=EsuBft2737_2a-0001|Name=EsuBft2737_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=945bp|location=Sequence derived from alignment at Scaffold_630:565925..566930+ (Ectocarpus subulatus male Bft15b)
ATGATGTGTCCTCGAGTTCTCCGACCGACTTTGGATCTTGTTCGCTTTTT
CCTTTTAAGCTTACAATTCCTCCTGGCCGTGCACCCGTCACGTCTCGCCC
CTACCGCGATAAATCCCCCGGTGGCGAAACAAGTCGACGCCATCCTTGAC
CAATATCTTGCGGCAGATTTGATCCAGCACTCGACCCCGCCTTACTCGAG
CCCTTTGGTAGTCATACCGAAGAAATCTGGTGGTGTTCGCATCACCGTCT
ATTATCGCAAGTTCAACAAGCTTTGTGCTTGGAGTCAGCTTCCGATTCCT
CGAGTTGATGATACTTTGGACAAGTTGTTGAAAGGGCGAATTTATTCCCT
TTTCGACATGAAATCTTCGTTCCACCAAATCACGGTGCACCGCGATACAA
TTCCTTTGACGGCATTCGTGACGTCTTCCGGGCTTTTCGAGTGGTTGAAG
ATGCCCCAAGGCAGTTCGGCTGCCTTTGGGTGGTTTTGCAAAGTTGTCAA
TGAAGTCATCAAAAATTTTCGCGATGTTGCATCGTACGTGGATGATTTGA
TCGTCTTTGATGACACCCCTGCTACTCATGTTGGTACCATGCGCGCCCTC
TTTGAACGCTTGCACTTCCTCGGACACACCACCTCCCCTGACGGCGTTAG
GCCTAACGGTGCCAAGGTTTCGGCCCTCACCAAAATGCCCATGCCCAAGG
ATGTCAAGCAACTACGTTCCCTTCTCGGTGGTCTCAGCTACTACCGTAAG
TTCCTCTCCAACATGGCTAAACGCATTCGACCTCTGAGAACTCTACTCAA
GAAGCAGGAGAAGTTTATCTTCACCCCTTCCATGCAGCAAGCCGTTCGCG
TTTTATTAGCTGAGTTGTCCTCCTGTTTTGGTTTATCCAGCTTGGGATGC
CGTTTTAGACTGCTCACGACCTTTTCATCTTTACTGTTATGCTAG