EsuBft2709_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2709_3a-0001
Unique NameEsuBft2709_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:1122..1463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2709_3
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length34
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2709_3aEsuBft2709_3aEctocarpus subulatus male Bft15bgeneScaffold_523 1122..1463 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2709_3a-0001-exonEsuBft2709_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 1122..1463 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2709_3a-0001-exonagat-three_prime_utr-10904Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 1122..1283 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2709_3a-0001-cdsEsuBft2709_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 1284..1463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2709_3a-0001EsuBft2709_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 1284..1463 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2709_3a-0001 ID=EsuBft2709_3a-0001|Name=EsuBft2709_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=342bp|location=Sequence derived from alignment at Scaffold_523:1122..1463- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCTTTGGTTGGTTGCTCTTTTTCACTGTACCGCCGCAGACACAT
TCTGACAGCACTTCAGACAGCAGCTTTGTGCCCCGCCAGCTGCTTGTTCC
ATGCCTACCATGGTGTTTTTGTACAGACAGCACTTCAGACAGCATTATGC
TGTAGTCGGCAATCTTCCGTTTTGGTATAGAGTGGGACAGGGAGGGGGTG
ATGCTACTGTAGTCGAACGGTGGGACGGACGTGCAGTTCAGTTTTTGGGC
ACGCATACGGTGCTGCAGGGATTTTTAGGTGTACCTCTTCGGGCTCTTGG
ATATCTTTTTCTCGTTACATGTGTGCGTGTTCTTTAGATCCT
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protein sequence of EsuBft2709_3a-0001

>EsuBft2709_3 ID=EsuBft2709_3|Name=EsuBft2709_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=59bp
MMALVGCSFSLYRRRHILTALQTAALCPASCLFHAYHGVFVQTALQTALC
CSRQSSVLV
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mRNA from alignment at Scaffold_523:1122..1463-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2709_3a-0001 ID=EsuBft2709_3a-0001|Name=EsuBft2709_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=342bp|location=Sequence derived from alignment at Scaffold_523:1122..1463- (Ectocarpus subulatus male Bft15b)
ATGATGGCTTTGGTTGGTTGCTCTTTTTCACTGTACCGCCGCAGACACAT
TCTGACAGCACTTCAGACAGCAGCTTTGTGCCCCGCCAGCTGCTTGTTCC
ATGCCTACCATGGTGTTTTTGTACAGACAGCACTTCAGACAGCATTATGC
TGTAGTCGGCAATCTTCCGTTTTGGTATAGAGTGGGACAGGGAGGGGGTG
ATGCTACTGTAGTCGAACGGTGGGACGGACGTGCAGTTCAGTTTTTGGGC
ACGCATACGGTGCTGCAGGGATTTTTAGGTGTACCTCTTCGGGCTCTTGG
ATATCTTTTTCTCGTTACATGTGTGCGTGTTCTTTAGATCCT
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Coding sequence (CDS) from alignment at Scaffold_523:1122..1463-

>EsuBft2709_3a-0001 ID=EsuBft2709_3a-0001|Name=EsuBft2709_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=180bp|location=Sequence derived from alignment at Scaffold_523:1122..1463- (Ectocarpus subulatus male Bft15b)
ATGATGGCTTTGGTTGGTTGCTCTTTTTCACTGTACCGCCGCAGACACAT
TCTGACAGCACTTCAGACAGCAGCTTTGTGCCCCGCCAGCTGCTTGTTCC
ATGCCTACCATGGTGTTTTTGTACAGACAGCACTTCAGACAGCATTATGC
TGTAGTCGGCAATCTTCCGTTTTGGTATAG
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