EsuBft2708_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2708_3a-0001
Unique NameEsuBft2708_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_561contigScaffold_561:131224..131622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog67593.Physo133219
ProteomeIdEsuBft2708_3
Protein domainsSSF56672
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length39
Hectar predicted targeting categoryother localisation
Evalue1.18e-10
EggNOG OGs2EEVD@1|root,2SK6B@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptionprotein). Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2708_3aEsuBft2708_3aEctocarpus subulatus male Bft15bgeneScaffold_561 131224..131622 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2708_3a-0001-exonEsuBft2708_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_561 131224..131622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2708_3a-0001-cdsEsuBft2708_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_561 131224..131622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2708_3a-0001EsuBft2708_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_561 131224..131622 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2708_3a-0001 ID=EsuBft2708_3a-0001|Name=EsuBft2708_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=399bp|location=Sequence derived from alignment at Scaffold_561:131224..131622- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGAGTTCCACGTTGCCTGTGCGGGGAAGCACTACCAGCTTTCCT
CGAGGCGCTCACTAGCCTACGAGTAAGATGGCCCGACAAGAGAATCCTCG
CAGCCAAGGCTGATGTCACCTCTGCGTTCAGAAATGTGAGGATATCACCA
GATCATGCACACAAGTTTCGCTACGTGGTAGGAGACGTGCTTGTCGCGGA
CCTACGGCTGACCTTTGGCTGGGCAGCGTCACCAGGATTGTGGGGTGTGT
TAGCCTCCGCTGCAGAGCACTCGCACCGCAACACGTCCCTCGCAAACGCT
AGACTACTACCAGAAGGAATCGCAATGATGTCCCACGTGAAAAAAAAACC
TCCTTGGGAAAAAGGCACCCCAACCCCAATACCATCGTCGGCAGGTTGA
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protein sequence of EsuBft2708_3a-0001

>EsuBft2708_3 ID=EsuBft2708_3|Name=EsuBft2708_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=132bp
MSGVPRCLCGEALPAFLEALTSLRVRWPDKRILAAKADVTSAFRNVRISP
DHAHKFRYVVGDVLVADLRLTFGWAASPGLWGVLASAAEHSHRNTSLANA
RLLPEGIAMMSHVKKKPPWEKGTPTPIPSSAG
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mRNA from alignment at Scaffold_561:131224..131622-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2708_3a-0001 ID=EsuBft2708_3a-0001|Name=EsuBft2708_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=399bp|location=Sequence derived from alignment at Scaffold_561:131224..131622- (Ectocarpus subulatus male Bft15b)
ATGTCTGGAGTTCCACGTTGCCTGTGCGGGGAAGCACTACCAGCTTTCCT
CGAGGCGCTCACTAGCCTACGAGTAAGATGGCCCGACAAGAGAATCCTCG
CAGCCAAGGCTGATGTCACCTCTGCGTTCAGAAATGTGAGGATATCACCA
GATCATGCACACAAGTTTCGCTACGTGGTAGGAGACGTGCTTGTCGCGGA
CCTACGGCTGACCTTTGGCTGGGCAGCGTCACCAGGATTGTGGGGTGTGT
TAGCCTCCGCTGCAGAGCACTCGCACCGCAACACGTCCCTCGCAAACGCT
AGACTACTACCAGAAGGAATCGCAATGATGTCCCACGTGAAAAAAAAACC
TCCTTGGGAAAAAGGCACCCCAACCCCAATACCATCGTCGGCAGGTTGA
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Coding sequence (CDS) from alignment at Scaffold_561:131224..131622-

>EsuBft2708_3a-0001 ID=EsuBft2708_3a-0001|Name=EsuBft2708_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=399bp|location=Sequence derived from alignment at Scaffold_561:131224..131622- (Ectocarpus subulatus male Bft15b)
ATGTCTGGAGTTCCACGTTGCCTGTGCGGGGAAGCACTACCAGCTTTCCT
CGAGGCGCTCACTAGCCTACGAGTAAGATGGCCCGACAAGAGAATCCTCG
CAGCCAAGGCTGATGTCACCTCTGCGTTCAGAAATGTGAGGATATCACCA
GATCATGCACACAAGTTTCGCTACGTGGTAGGAGACGTGCTTGTCGCGGA
CCTACGGCTGACCTTTGGCTGGGCAGCGTCACCAGGATTGTGGGGTGTGT
TAGCCTCCGCTGCAGAGCACTCGCACCGCAACACGTCCCTCGCAAACGCT
AGACTACTACCAGAAGGAATCGCAATGATGTCCCACGTGAAAAAAAAACC
TCCTTGGGAAAAAGGCACCCCAACCCCAATACCATCGTCGGCAGGTTGA
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