EsuBft2708_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2708_2a-0001
Unique Name	EsuBft2708_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_561	contig	Scaffold_561:122005..125876 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2708_2
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	330
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2708_2a	EsuBft2708_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_561 122005..125876 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2708_2a-0001	EsuBft2708_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_561 122005..122154 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2708_2a-0001-exon	agat-exon-65244	Ectocarpus subulatus male Bft15b	exon	Scaffold_561 122005..124182 +
EsuBft2708_2a-0001-exon	agat-exon-65243	Ectocarpus subulatus male Bft15b	exon	Scaffold_561 124465..124737 +
EsuBft2708_2a-0001-exon	EsuBft2708_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_561 125023..125876 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2708_2a-0001-cds	EsuBft2708_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_561 122005..122154 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2708_2a-0001-exon	agat-three_prime_utr-10898	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_561 122155..124182 +
EsuBft2708_2a-0001-exon	agat-three_prime_utr-10899	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_561 124465..124737 +
EsuBft2708_2a-0001-exon	agat-three_prime_utr-10900	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_561 125023..125876 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_561:122005..125876+
coding sequence from alignment at Scaffold_561:122005..125876+

spliced messenger RNA

>EsuBft2708_2a-0001 ID=EsuBft2708_2a-0001|Name=EsuBft2708_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3305bp|location=Sequence derived from alignment at Scaffold_561:122005..125876+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTATAAGAGACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCTTGTTCCATGCCTACCATGGTGTTTTTGTAC
AGACAGCACTTCAGACAGCAGTATGCTGTAGTCGGCAATCTTCCGTTTTG
GTATAGAGTGGGACAGGGAGGGGGTGATGCTACTGTAGTCGAACGGTGGG
ACGGACGTGCAGTTCAGTTTTTGGGCACGCATACGGTGCTGCAGGGATTT
TTATATGTATACCTCATCGGGCTCTTGGATACCTTTTTCTCGTTATATGT
GTGCGTGTTCTTGAGATCCTCAGATGGCTCTAGCACTTTCGTGACCACGG
GCTGAGAGTCTTTGCTAGATTTTGGCATTTAGCAACTGACATACGGTTAA
ACGTGAAGACAACAACAACAACATAGACCCAGCACGAGACAGATTCGAAC
CTTGTGTCGTGCATTTTGTTTTTTCACCCGCTTCTTTTTCTTATTTTTTT
TTCTATTTTACCCCCTCGATTTTCGTCCAAATGGGGGCAAAAATCGCATC
TGTATGTCAGGTAGGGACTAAATCAACCCGAATTACAACAAAAATTTGCA
TGGTGTTCATTCTAGGGGTGCTTGCCACAATGCCGAAGAAAAAACGGGCA
AAAAACACTTGAAATCTCTTTGCGTGGTGCCCAAAGTAGGCCATTGTTGG
CCCAAAAACAGGCAAAAAAACACGGGGATTTCTTGTTTTTGTCCCCGGGC
ATGTATGTTTTTTTATATACTTTCTTCGGAAATGCTTTGTATTACTACCA
TAACGATGCTTGCCAAAGGAAAAGTTCTGGAAATCATTAGAACGTGCGCA
ATCACTACGAATTCGACGTGGTCCTTATTCGGGGCATTTGTGTTATACCG
GTATTTTTCCCTGACAAATGAAGAATACTACGCTGGCACCATGTCATCAC
CACATGCATTTTTTTGTTTTTTTGTTTCATCGTTTAGGTCGTGTTATAAG
CTAACGTTCGATACCTCTCTGTCGCCACAAATCGTCAAGACACCCGAGAA
CGACCTCTCAGAGCGGGGGCTCCGTTAAGTGGTCCTTAATCGGCACATTT
ACTCCACACACCCAACACCGGTATTCAGGAAAAAAGCGGAGAAATAATTG
ACAACACAAGAGATGTTTGTCCGTGCGCCACGGTTCGATGCCGTCCGCTT
GCTCCGGTTCCGCTGCTCCGGTGCCGCTGCTCCGGTGCCGCTGTGGCCAG
TCCTAGCACGACCAAACTCGACCCGCTCCGCTTCCTACACGCTCTCGTTG
CTGTCCTTCCCAGTCGGTTCCTCGCTTTCTCCCTCGTTGCACTTGGGTTC
TTGGTCTAAAAATCTCAAGCCGAAGGGTCAACCAGCCCAATCAGTTACTG
AGACGGTACAGCTCCCTCTAGCAAACCTAGGGTCGTGTACATAGTGCCCG
TCCACCATTCTGATGACGTCTGCCTCCGCGCACAAAGATGAGATGGGCAT
TGCTGCCTGCACCGACGGCCTGGAGGCCCGCGCATCTGCACCTTTGTACC
TGACACACCAGTGCCGACCCAACTCCACCACAACGCACGCCTCGTGGCGG
GTGCGCCGCAGGAAGAAGGTATCGGTCCCTTGAGGGTGAGTCTAGCCAAC
CTTCTGCCGACACACGGGCGAGAGAGGCGACCATACCCACTGCATTTGAC
ACACACCCACATGTGAGTGATGAAACCCCAACCACACACCTCTATCGGCG
GCCACGTCAGGAAGCAATGATGAGATAATGTTCTCCCGTGCCCTTCTCAC
ATTCAACGACATGCCATTACATAACAAGGTAGCTTTTCGCTCACGCTATG
GATTCATTGCTAAGACCGTTTTTTATGGCTCACAAATGTTGCAAGAAAAG
TTGCAAACTTTTTATGCAACTTTGCCCGGGAGCTTTCGTCTGTAACTATT
GTTTGCTCAAGAATTCTGGATTATTTTTTCTGCAGGCAACCAACGAAAAA
CCAAGACACATGAAACAAATTGGGAGCGCAGGTAAAATGCCGTCTTGCTC
ACAACGTTTACTTGTCGGACTAACCCGTTGCAAACTTCCCAAGATTGCNC
CATTGCCCTACTATCATAACTATTGTTTCGGCCTCTGGCCTCAACATATC
TTACTACATTAGGCATGTCCGATGACCTACTCCTCCGAACCGCTCCCTGG
TCACTCCTCGGGTTCCGTAAGGGCCTGAGACACAAACTTGGCTTCTTCAC
CCCCCGCCCTAACGTACACCATGAAAGCCGATGATTTCCACCTTCCGGCT
CTCTGGATCTGAATTACCGACGCCCCCGTACTTGCTAGGTGCGTGGCCCC
CCCGATCCTTCCTGAATGCAACGCATACTTCTGTGGGTCTCTACCCGCCG
CACTCACGAGTAACCTGAGGTGTCTCGATGCCTCTGCCCTCGAAATAACC
TTCCACTTGTCTTGTGCCCACGATTGCATCAACGGCGCATGACTCCCAAG
CGCGGGGTGCAGATCTCACAGATCGAGTAACACCTTCAACGCTACTCCCG
ATCTTGTGACGGTTGCTCCCAAACGTTTTTGATCTGCTTTTGACGCTCTG
AACGTGACTTCCACTTGGCTAGCCTGCCTCCGGTCTGCCCATGCAACCCT
TACCGGACCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNN

protein sequence of EsuBft2708_2a-0001

>EsuBft2708_2 ID=EsuBft2708_2|Name=EsuBft2708_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MCIRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_561:122005..125876+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2708_2a-0001 ID=EsuBft2708_2a-0001|Name=EsuBft2708_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3872bp|location=Sequence derived from alignment at Scaffold_561:122005..125876+ (Ectocarpus subulatus male Bft15b)
ATGTGTATAAGAGACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCTTGTTCCATGCCTACCATGGTGTTTTTGTAC
AGACAGCACTTCAGACAGCAGTATGCTGTAGTCGGCAATCTTCCGTTTTG
GTATAGAGTGGGACAGGGAGGGGGTGATGCTACTGTAGTCGAACGGTGGG
ACGGACGTGCAGTTCAGTTTTTGGGCACGCATACGGTGCTGCAGGGATTT
TTATATGTATACCTCATCGGGCTCTTGGATACCTTTTTCTCGTTATATGT
GTGCGTGTTCTTGAGATCCTCAGATGGCTCTAGCACTTTCGTGACCACGG
GCTGAGAGTCTTTGCTAGATTTTGGCATTTAGCAACTGACATACGGTTAA
ACGTGAAGACAACAACAACAACATAGACCCAGCACGAGACAGATTCGAAC
CTTGTGTCGTGCATTTTGTTTTTTCACCCGCTTCTTTTTCTTATTTTTTT
TTCTATTTTACCCCCTCGATTTTCGTCCAAATGGGGGCAAAAATCGCATC
TGTATGTCAGGTAGGGACTAAATCAACCCGAATTACAACAAAAATTTGCA
TGGTGTTCATTCTAGGGGTGCTTGCCACAATGCCGAAGAAAAAACGGGCA
AAAAACACTTGAAATCTCTTTGCGTGGTGCCCAAAGTAGGCCATTGTTGG
CCCAAAAACAGGCAAAAAAACACGGGGATTTCTTGTTTTTGTCCCCGGGC
ATGTATGTTTTTTTATATACTTTCTTCGGAAATGCTTTGTATTACTACCA
TAACGATGCTTGCCAAAGGAAAAGTTCTGGAAATCATTAGAACGTGCGCA
ATCACTACGAATTCGACGTGGTCCTTATTCGGGGCATTTGTGTTATACCG
GTATTTTTCCCTGACAAATGAAGAATACTACGCTGGCACCATGTCATCAC
CACATGCATTTTTTTGTTTTTTTGTTTCATCGTTTAGGTCGTGTTATAAG
CTAACGTTCGATACCTCTCTGTCGCCACAAATCGTCAAGACACCCGAGAA
CGACCTCTCAGAGCGGGGGCTCCGTTAAGTGGTCCTTAATCGGCACATTT
ACTCCACACACCCAACACCGGTATTCAGGAAAAAAGCGGAGAAATAATTG
ACAACACAAGAGATGTTTGTCCGTGCGCCACGGTTCGATGCCGTCCGCTT
GCTCCGGTTCCGCTGCTCCGGTGCCGCTGCTCCGGTGCCGCTGTGGCCAG
TCCTAGCACGACCAAACTCGACCCGCTCCGCTTCCTACACGCTCTCGTTG
CTGTCCTTCCCAGTCGGTTCCTCGCTTTCTCCCTCGTTGCACTTGGGTTC
TTGGTCTAAAAATCTCAAGCCGAAGGGTCAACCAGCCCAATCAGTTACTG
AGACGGTACAGCTCCCTCTAGCAAACCTAGGGTCGTGTACATAGTGCCCG
TCCACCATTCTGATGACGTCTGCCTCCGCGCACAAAGATGAGATGGGCAT
TGCTGCCTGCACCGACGGCCTGGAGGCCCGCGCATCTGCACCTTTGTACC
TGACACACCAGTGCCGACCCAACTCCACCACAACGCACGCCTCGTGGCGG
GTGCGCCGCAGGAAGAAGGTATCGGTCCCTTGAGGGTGAGTCTAGCCAAC
CTTCTGCCGACACACGGGCGAGAGAGGCGACCATACCCACTGCATTTGAC
ACACACCCACATGTGAGTGATGAAACCCCAACCACACACCTCTATCGGCG
GCCACGTCAGGAAGCAATGATGAGATAATGTTCTCCCGTGCCCTTCTCAC
ATTCAACGACATGCCATTACATAACAAGGTAAATATGTTCTCCCGCGCCG
CACATGCCCCCATGCATCATACACAAAAAATAAGTTGATGACGAAAATAT
ACACACCCCGAGACGCGCTTGCTCCGCAACCACATAAGGGTGCCATCATA
GAACACCCGACCAACCAAGTTCCCCTAAATCTTCCGTCTACAACTTCTAA
ACATATAACATACAGATAGACACACGAGATGGCTACCAAACTGCTTGTTG
AGTCTGTTACCCACAGGGGAAATATTGTTGTATGCTGTCTGGGAAACCGT
AGACATACAGGTAGCTTTTCGCTCACGCTATGGATTCATTGCTAAGACCG
TTTTTTATGGCTCACAAATGTTGCAAGAAAAGTTGCAAACTTTTTATGCA
ACTTTGCCCGGGAGCTTTCGTCTGTAACTATTGTTTGCTCAAGAATTCTG
GATTATTTTTTCTGCAGGCAACCAACGAAAAACCAAGACACATGAAACAA
ATTGGGAGCGCAGGTAAAATGCCGTCTTGCTCACAACGTTTACTTGTCGG
ACTAACCCGTTGCAAACTTCCCAAGATTGCNCCGTAGACATACAGGTAGC
TTTTCGCTCACGCTATGGATTCATTGCTAAGACCGTTTTTTATGGCTCAC
AAATGTTGCAAGAAAAGTTGCAAACTTTTTATGCAACTTTGCCCGGGAGC
TTTCGTCTGTAACTATTGTTTGCTCAAGAATTCTGGATTATTTTTTCTGC
AGGCAACCAACGAAAAACCAAGACACATGAAACAAATTGGGAGCGCAGGT
AAAATGCCGTCTTGCTCACAACGTTTACTTGTCGGACTAACCCGTTGCAA
ACTTCCCAAGATTGCAAGATTGCCCTACTATCATAACTATTGTTTCGGCC
TCTGGCCTCAACATATCTTACTACATTAGGCATGTCCGATGACCTACTCC
TCCGAACCGCTCCCTGGTCACTCCTCGGGTTCCGTAAGGGCCTGAGACAC
AAACTTGGCTTCTTCACCCCCCGCCCTAACGTACACCATGAAAGCCGATG
ATTTCCACCTTCCGGCTCTCTGGATCTGAATTACCGACGCCCCCGTACTT
GCTAGGTGCGTGGCCCCCCCGATCCTTCCTGAATGCAACGCATACTTCTG
TGGGTCTCTACCCGCCGCACTCACGAGTAACCTGAGGTGTCTCGATGCCT
CTGCCCTCGAAATAACCTTCCACTTGTCTTGTGCCCACGATTGCATCAAC
GGCGCATGACTCCCAAGCGCGGGGTGCAGATCTCACAGATCGAGTAACAC
CTTCAACGCTACTCCCGATCTTGTGACGGTTGCTCCCAAACGTTTTTGAT
CTGCTTTTGACGCTCTGAACGTGACTTCCACTTGGCTAGCCTGCCTCCGG
TCTGCCCATGCAACCCTTACCGGACCGCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_561:122005..125876+

>EsuBft2708_2a-0001 ID=EsuBft2708_2a-0001|Name=EsuBft2708_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_561:122005..125876+ (Ectocarpus subulatus male Bft15b)
ATGTGTATAAGAGACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN