EsuBft2673_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2673_5a-0001
Unique NameEsuBft2673_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:608377..611543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2673_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length279
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_5aEsuBft2673_5aEctocarpus subulatus male Bft15bgeneScaffold_630 608377..611543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_5a-0001EsuBft2673_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 611272..611543 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_5a-0001-exonagat-exon-24547Ectocarpus subulatus male Bft15bexonScaffold_630 608377..610640 -
EsuBft2673_5a-0001-exonagat-exon-24546Ectocarpus subulatus male Bft15bexonScaffold_630 610943..611369 -
EsuBft2673_5a-0001-exonEsuBft2673_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 611444..611543 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_5a-0001-exonagat-three_prime_utr-10771Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 608377..610640 -
EsuBft2673_5a-0001-exonagat-three_prime_utr-10772Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 610943..611271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_5a-0001-cdsEsuBft2673_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 611272..611369 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2673_5a-0001 ID=EsuBft2673_5a-0001|Name=EsuBft2673_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2791bp|location=Sequence derived from alignment at Scaffold_630:608377..611543- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGACAGCATAAAGGGACGGGCTCCTGGTCGCCGGGTGGCTGCTAC
CCCAGCCAGATACAGAGAGCAGGGCCATCTCGGCGCTGCTGCCGGCGAAG
GTGGCGACAGCACGGCGCTGGAAATGGTCGGTTTTCTGGAAAAATATATT
GCGAAGATTAGAACCGAGATGGCTGAATGGGGCAAGAGTCCCCTTTGAGG
GACAGCTCGCGGTCCCTCTCCGACTCCACATGTGCAAGACCGATCGATTG
TGTTTTAGCGCCGGTTGGTGTAATATCTTTCGTGTGTGGGCGGGGGAGGG
AAGGGGCAGATCGCTTTCACTTGCCGTACCGTTTTTCTTTTGTCGGGTGT
GTGTTTGACGAGTGCGCCACGTGTAGAATACGCATGGAGAACGCGTAGCG
CACGCTTGATGTTCGATGTTTTTTTTAGCCACGTACAGCAGTACCACTTA
TCTTTTGTTATGGCGTTTTTTTTAGAGATGACTAGGGGGGGGCAACAGGC
AGAGAGAACGTGTGGCGCATGACCAAATTCATTTTTTTTAGCCACGTACA
GCAGTACCACATTTTTTTTTGGTCGGTGTGTTTTTCACCAACCAACGTCT
GCATTCGTAGATGCTTCGGAAACAACGTCTCCTCACGACGCGAACGTAGT
CAAATACAACGTAAAAAACGTTTTGAACGCGAATCCATTCTCGATATGGT
TATCCCGGGCTGTGGGAGCTGACCGTCTACTACGCCATGATGCCGTTCAG
GCAATACTGCCTCTCTAGAGACAACATCGTGAGGTCAGAAAAAAAAAAAC
TCTTTTACCATCTCGCCTTACGCAACTATGACATGACCAAATTCCCCGAC
ACAGGGGGGAGGGTGCTCACCCTTACCCTACACGCCCAACGTTGTAAAAT
AAATGCGTTTGGAAACCTACAATCTCCTTCGACCTCTCTGCAACATTCGA
ATTTTCTCGCGCAAGAGATGCACAACGCAGGAATGACACCCAAACAAACG
ACGTCATGAAAAGCGACAACACTTACCGAAACAAAACGAAACAAGACGAA
GTCTTACCGGACACCACTCAGGCATTACCCCGGTTGATGATGTTTGTAAC
GCATAAAACACGACTTCCGCAAAATTGTCTCCACGTCCTCGTAGAGGCGC
ATATGGATTTGGCGCCCGACCCTCTCCCCCCTTAACAAAAAATTTTCTCA
CCCGCCCGTGCGCCTTCCCTTCCCTTTCACCCCCCCCACGCCCTACCCCA
CCAAAGGCGTTGCATTCCCGACCACCATTGTCCACATCCCCCGCCCCGGC
CACGGCCCACGCTCCTCAGAGGCCACCACCGCCACATTTGCCTCGTCTCG
TCCATCACCCACGTAGTACGTCCTCGGGACCCACCCACCCTCCACCGCAG
CCCGCCCGCGTTCGACCCCTTACGTCTTCCTCGCTGCGTTGCGCACCAAG
TTGTGCTTTGGGCGGTACTGGCGCTTGTTGTCCAGCATCATCGTGATCCC
CTTGCGCGTGGAGACTTCGCCTGACCTGGTCGGTTTCTGCGCGTCCTTGG
TGGTCTTGGTGGTCGTGCTTAAAGTTCCTGGCAGAGTCTTGTCGCCGAGT
AGGTGGGGGCGTACCTGGACCACCTCGGCGTCTTCTTCCGACCGGTGGAT
TGGTGTGACTTCTCGTCCCGGAGAAAGTTGTGGAGGCCAAAGAGCGCCGT
GATGAGGTCGGAGCGCCCAGCGAACTGAACACGCAACGGCTTCCACAGGA
TGCCCCACTGGCCGACGAGAATGCCGAACGCTTGCTCGATCCTGACTCTG
AGTTGGCTCAGATAGAAGTTGAACGCATCTTTGTCCAGCGGTAGTCCCCT
CCCTGGGTACGGAGTNCCAGCGGCAGTCCCCTCCCTGGGTACGGAGTCAA
CAGGTGGTCGCTTAGGGGGTAAGCCGCGTCTCCGAGCTTGTAGAAGCCTG
TCGGCAGGTTTTTTACCGCTGTGGATAGATCCAAATGGTTCCATGCCGTC
CAGTCATTGGTCGAGCCGGGTGCAATGCAAGACATGTTGCAAAACCGGTA
GTTGGCATCGCATGTCGCCTGTACGTTCATCCCGTAGCCGCACTTACTTG
CTCCCAGAATAGTACGAGAGAAACAACAACGCAGTAGTATTTTAAAAGCT
TACGAACGCATGTAGGATACCATGAGGATTGTCATTGGTTTTATTTCAAA
TTGAAGAGGAGATATTTTTACGATGTAAGTGACAGTAGAATTAAGTCCTA
CATTTGTTGTTGTTCTTCGTATTGGTTAAGTATTTATTTATTTATTTTTG
CCTTCCGACAATTGCAGATGTACCTCAGAAAACTTTCACTTAATGTCTCA
TACTCTACATGAATATTAAACCAATAAGAAGTACAACAACATGTAGGACT
TATTTCTACTGTCATTTACATCGTACAAGTATCTCCTCTTCAACTTACCA
ATGACAATCCTGATGGTATCCTATATGCGTTCGTAAGCTTGCTAAAATAC
TACTGCGTTGATGTCCGCTTGTAAAAGCTGAAATCCAACAAATGCTTTGA
TCCATGCTACATCTCCGTGTTGGAAAAGCCCTTTCATCTCCGTTCATGAT
AACATCTTACCCTATTCTACGCAAATCTGTCACATCTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft2673_5a-0001

>EsuBft2673_5 ID=EsuBft2673_5|Name=EsuBft2673_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=65bp
MADSIKGRAPGRRVAATPARYREQGHLGAAAGEGGDSTALEMVGFLEKYI
AKIRTEMAEWGKSPL
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mRNA from alignment at Scaffold_630:608377..611543-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2673_5a-0001 ID=EsuBft2673_5a-0001|Name=EsuBft2673_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3167bp|location=Sequence derived from alignment at Scaffold_630:608377..611543- (Ectocarpus subulatus male Bft15b)
ATGGCAGACAGCATAAAGGGACGGGCTCCTGGTCGCCGGGTGGCTGCTAC
CCCAGCCAGATACAGAGAGCAGGGCCATCTCGGCGCTGCTGCCGGCGAAG
GTTCGAGCGGGCGCGGAATGCTCCCAGGCATCTCTGGCGCATCGTCGGCG
CTACACACCCCGCAGAGGCGACAGGTGGCGACAGCACGGCGCTGGAAATG
GTCGGTTTTCTGGAAAAATATATTGCGAAGATTAGAACCGAGATGGCTGA
ATGGGGCAAGAGTCCCCTTTGAGGGACAGCTCGCGGTCCCTCTCCGACTC
CACATGTGCAAGACCGATCGATTGTGTTTTAGCGCCGGTTGGTGTAATAT
CTTTCGTGTGTGGGCGGGGGAGGGAAGGGGCAGATCGCTTTCACTTGCCG
TACCGTTTTTCTTTTGTCGGGTGTGTGTTTGACGAGTGCGCCACGTGTAG
AATACGCATGGAGAACGCGTAGCGCACGCTTGATGTTCGATGTTTTTTTT
AGCCACGTACAGCAGTACCACTTATCTTTTGTTATGGCGTTTTTTTTAGA
GATGACTAGGGGGGGGCAACAGGCAGAGAGAACGTGTGGCGCATGACCAA
AGTTTGTACAGCAGTACCACTTGTCATTTTTATGGTGGCGTTTTTTTACA
GATGACTAGAGGGGGGCAACAGGCAGAGAGAACGTGTGGCGTATGACCAA
AGTTTGTACAGCAGTACCACTTGCCACATGGTGGCGTTTTTATACAGATG
ACTAGGGGGGGGCAACAGGCGGAGAGAACGTGTGGCGTATGACCAAAGTT
TGTACAGCAGTACCACTTGTCATTTTTTATGGTGGCGTTTCTTTCCAGAT
GACAAGGGGGGGGCAACAGGCAGAGAGAACATGTGGCGCACGACCAAACA
AAGTTCATTTTTTTTAGCCACGTACAGCAGTACCACATTTTTTTTTGGTC
GGTGTGTTTTTCACCAACCAACGTCTGCATTCGTAGATGCTTCGGAAACA
ACGTCTCCTCACGACGCGAACGTAGTCAAATACAACGTAAAAAACGTTTT
GAACGCGAATCCATTCTCGATATGGTTATCCCGGGCTGTGGGAGCTGACC
GTCTACTACGCCATGATGCCGTTCAGGCAATACTGCCTCTCTAGAGACAA
CATCGTGAGGTCAGAAAAAAAAAAACTCTTTTACCATCTCGCCTTACGCA
ACTATGACATGACCAAATTCCCCGACACAGGGGGGAGGGTGCTCACCCTT
ACCCTACACGCCCAACGTTGTAAAATAAATGCGTTTGGAAACCTACAATC
TCCTTCGACCTCTCTGCAACATTCGAATTTTCTCGCGCAAGAGATGCACA
ACGCAGGAATGACACCCAAACAAACGACGTCATGAAAAGCGACAACACTT
ACCGAAACAAAACGAAACAAGACGAAGTCTTACCGGACACCACTCAGGCA
TTACCCCGGTTGATGATGTTTGTAACGCATAAAACACGACTTCCGCAAAA
TTGTCTCCACGTCCTCGTAGAGGCGCATATGGATTTGGCGCCCGACCCTC
TCCCCCCTTAACAAAAAATTTTCTCACCCGCCCGTGCGCCTTCCCTTCCC
TTTCACCCCCCCCACGCCCTACCCCACCAAAGGCGTTGCATTCCCGACCA
CCATTGTCCACATCCCCCGCCCCGGCCACGGCCCACGCTCCTCAGAGGCC
ACCACCGCCACATTTGCCTCGTCTCGTCCATCACCCACGTAGTACGTCCT
CGGGACCCACCCACCCTCCACCGCAGCCCGCCCGCGTTCGACCCCTTACG
TCTTCCTCGCTGCGTTGCGCACCAAGTTGTGCTTTGGGCGGTACTGGCGC
TTGTTGTCCAGCATCATCGTGATCCCCTTGCGCGTGGAGACTTCGCCTGA
CCTGGTCGGTTTCTGCGCGTCCTTGGTGGTCTTGGTGGTCGTGCTTAAAG
TTCCTGGCAGAGTCTTGTCGCCGAGTAGGTGGGGGCGTACCTGGACCACC
TCGGCGTCTTCTTCCGACCGGTGGATTGGTGTGACTTCTCGTCCCGGAGA
AAGTTGTGGAGGCCAAAGAGCGCCGTGATGAGGTCGGAGCGCCCAGCGAA
CTGAACACGCAACGGCTTCCACAGGATGCCCCACTGGCCGACGAGAATGC
CGAACGCTTGCTCGATCCTGACTCTGAGTTGGCTCAGATAGAAGTTGAAC
GCATCTTTGTCCAGCGGTAGTCCCCTCCCTGGGTACGGAGTNCCAGCGGC
AGTCCCCTCCCTGGGTACGGAGTCAACAGGTGGTCGCTTAGGGGGTAAGC
CGCGTCTCCGAGCTTGTAGAAGCCTGTCGGCAGGTTTTTTACCGCTGTGG
ATAGATCCAAATGGTTCCATGCCGTCCAGTCATTGGTCGAGCCGGGTGCA
ATGCAAGACATGTTGCAAAACCGGTAGTTGGCATCGCATGTCGCCTGTAC
GTTCATCCCGTAGCCGCACTTACTTGCTCCCAGAATAGTACGAGAGAAAC
AACAACGCAGTAGTATTTTAAAAGCTTACGAACGCATGTAGGATACCATG
AGGATTGTCATTGGTTTTATTTCAAATTGAAGAGGAGATATTTTTACGAT
GTAAGTGACAGTAGAATTAAGTCCTACATTTGTTGTTGTTCTTCGTATTG
GTTAAGTATTTATTTATTTATTTTTGCCTTCCGACAATTGCAGATGTACC
TCAGAAAACTTTCACTTAATGTCTCATACTCTACATGAATATTAAACCAA
TAAGAAGTACAACAACATGTAGGACTTATTTCTACTGTCATTTACATCGT
ACAAGTATCTCCTCTTCAACTTACCAATGACAATCCTGATGGTATCCTAT
ATGCGTTCGTAAGCTTGCTAAAATACTACTGCGTTGATGTCCGCTTGTAA
AAGCTGAAATCCAACAAATGCTTTGATCCATGCTACATCTCCGTGTTGGA
AAAGCCCTTTCATCTCCGTTCATGATAACATCTTACCCTATTCTACGCAA
ATCTGTCACATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_630:608377..611543-

>EsuBft2673_5a-0001 ID=EsuBft2673_5a-0001|Name=EsuBft2673_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=198bp|location=Sequence derived from alignment at Scaffold_630:608377..611543- (Ectocarpus subulatus male Bft15b)
ATGGCAGACAGCATAAAGGGACGGGCTCCTGGTCGCCGGGTGGCTGCTAC
CCCAGCCAGATACAGAGAGCAGGGCCATCTCGGCGCTGCTGCCGGCGAAG
GTGGCGACAGCACGGCGCTGGAAATGGTCGGTTTTCTGGAAAAATATATT
GCGAAGATTAGAACCGAGATGGCTGAATGGGGCAAGAGTCCCCTTTGA
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