EsuBft2673_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2673_4a-0001
Unique NameEsuBft2673_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:602874..604741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog42099.EPrPV00000023693
ProteomeIdEsuBft2673_4
Protein domainsPF13358
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl121069|Pythiales
Length180
Hectar predicted targeting categoryother localisation
Evalue1.83e-06
EggNOG OGs2CYSQ@1|root,2S65Z@2759|Eukaryota,1MEKU@121069|Pythiales
Date last modified2016-06-14
Date creation2016-06-14
DescriptionTransposase. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_4aEsuBft2673_4aEctocarpus subulatus male Bft15bgeneScaffold_630 602874..604741 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_4a-0001-exonagat-exon-24545Ectocarpus subulatus male Bft15bexonScaffold_630 602874..602975 +
EsuBft2673_4a-0001-exonEsuBft2673_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 603044..604741 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_4a-0001-exonagat-five_prime_utr-6908Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 602874..602945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_4a-0001-cdsEsuBft2673_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 602946..602975 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_4a-0001-exonagat-three_prime_utr-10770Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 604586..604741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_4a-0001EsuBft2673_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 602946..604585 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2673_4a-0001 ID=EsuBft2673_4a-0001|Name=EsuBft2673_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1800bp|location=Sequence derived from alignment at Scaffold_630:602874..604741+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAGCAGGAATACATTGTACTGTTGTACTGCAGTTCTTCACAGCAGTACTT
TACAGCACCTGAGTAGGCTTGCATGTGCGATGTCTCTCTGTGCAATGCCC
AAGTTGCGCGCACTTTCAAGATCGGCCACGACAAGGTCAGACGCATCAAC
AACCACTGGTGGGATCACCGCCAGTTGTACGAGACCACCGCCGTGGGGAG
AGGCAAGACGGCAAAGAAGGATGATGGGCGACGCCGCCTCACCGAAGTAC
AAGAAGATCAACTTCGCGAGTTCATCAATGACGAGCACAAGGCCGGTCGT
CAAGTCTTTCGCCGCACGGTGGCAGAATGGATGCACAGGACTTGCAACAT
GGAGCAGCCGTCCAACCGTTCGGCAGGAGGGCTGCTGAGTAGGCTCGGCT
ACAAGCGTCGTAGAGGCAGGATCAAAACGCCACCGTTAAACGCCGAAAGA
CTTGCTCGCATTCGTCGGTTTCTTGTTGAGATGGTCATGGCAAAGAGGGC
AGAGGATGCTGGGTTAGCAGTGATCGTGTACATGGATGAGAGTTTTGTCC
ACCAGGCTCATGGTTCCCCCTATTTTTTTTTTCCTTCGGACGAGGATGGA
GTTGTGCAGGATGGGATTGGTCGCACAACGGGGAAGGGCTTGCGCATGAT
CATGGTGCATGCAATCACGAAGTGGGGGCCGTTGGCTAAGCTTTGTGATG
GGTTACCGATCGAAGAGGGCTGGTTCAAGGAAACGGGTAGCGGCAAGAAG
GAAATGGAAGATGAGGAGACAGCAGAGTTTCTGTGGCAGGCTAAGTTGGC
AAAGGGCGATTACCACGCAGCAATGACCGACTCGATGTTCATGGAGTGGC
TTGAACACCGCCTTAGCCCTGCGTACAACGCGATCCCGGAGTTCAAAGGC
AAACGGATGATTCTTGTTCTTGACAACGCCTCATACCACCATGGATTTGA
GGCGGAAGTCAAAGCGCCGGAAACCAACACCAAGAAGCACAACGTCGATC
TGTTGCGTATGTTTGGGGCCAAGTCGATGAGGGTTAGGCGTAAGGAGGGC
GAACAGGGCGTTGTTGAGTACAACTTCGAGGTACCGACAGAGCCTGGTTC
TTCATTCCCTGCAGGGAACAGGGAGGGCGGTGTAAGCAGAGCGGAGGTAG
CAACGGCCACTCGGGAGTACATCCACCTCAATCACCCTGAAAGGCTCGAG
GAACGGGTGGTGACGTTCATGAGGAAAAAGGGGTGGGCGTTGATTTGGAC
GCCGCCCTACATGCCGTCCTTTCAACCGATCGAGCTTTTTTGGCAGCATG
GTAAGCAGTACGTCAGCCTTAACTTTGAGTTGAAGCGAAAGATGCGGGAG
GTGTGGGTGCAGATTCGTAAAGGTTGGTACGGGGACAAGGAATGGCCAGG
CCAGGAGGGGGGGTGGAAGGCAGCCGATTGTTCGAAGCTGGTTGACCACG
CCATTGGAGATATGAATAAGTGGGTCAAGGACCGTGATGGAGTGCTTTCT
GGTACGATAGGCAGCCTCGAAAAGCCGGACGGGTACGATACAGATGATGT
GTCGCCCGTGGGTGATGTCGAGGAAGGGGTAGGGGAGCAGATCCAGCAGG
AAAGCGCAGAATGGGGTGATGGCAGCGACGAGGTTGAACCATGATGAGAT
TTTTTTCAGCCTTGTGATCAATTGCTACACCCATGCACTGGGTGTACCAT
GTTCCAACAGCACACATGTGTGTTTGCTGTGCGCGGGGGGTTGCGTCCCT
GCTTCCAGCTGCTGCAGTTGTTGAAAAAAAAAATCAAAAATATTCAATTG
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protein sequence of EsuBft2673_4a-0001

>EsuBft2673_4 ID=EsuBft2673_4|Name=EsuBft2673_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=523bp
MCDVSLCNAQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKD
DGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQPSNRS
AGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMVMAKRAEDAGLAV
IVYMDESFVHQAHGSPYFFFPSDEDGVVQDGIGRTTGKGLRMIMVHAITK
WGPLAKLCDGLPIEEGWFKETGSGKKEMEDEETAEFLWQAKLAKGDYHAA
MTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFEAEVKAPE
TNTKKHNVDLLRMFGAKSMRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNR
EGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSF
QPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKA
ADCSKLVDHAIGDMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVE
EGVGEQIQQESAEWGDGSDEVEP
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mRNA from alignment at Scaffold_630:602874..604741+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2673_4a-0001 ID=EsuBft2673_4a-0001|Name=EsuBft2673_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1868bp|location=Sequence derived from alignment at Scaffold_630:602874..604741+ (Ectocarpus subulatus male Bft15b)
CAGCAGGAATACATTGTACTGTTGTACTGCAGTTCTTCACAGCAGTACTT
TACAGCACCTGAGTAGGCTTGCATGTGCGATGTCTCTCTGTGCAATGCCC
AAGTGAACCGACCTTATTCATAAACGATGTTGCAATATTTTCTCTTCTCT
GGACCTCCCTATGCTGGCAGGTTGCGCGCACTTTCAAGATCGGCCACGAC
AAGGTCAGACGCATCAACAACCACTGGTGGGATCACCGCCAGTTGTACGA
GACCACCGCCGTGGGGAGAGGCAAGACGGCAAAGAAGGATGATGGGCGAC
GCCGCCTCACCGAAGTACAAGAAGATCAACTTCGCGAGTTCATCAATGAC
GAGCACAAGGCCGGTCGTCAAGTCTTTCGCCGCACGGTGGCAGAATGGAT
GCACAGGACTTGCAACATGGAGCAGCCGTCCAACCGTTCGGCAGGAGGGC
TGCTGAGTAGGCTCGGCTACAAGCGTCGTAGAGGCAGGATCAAAACGCCA
CCGTTAAACGCCGAAAGACTTGCTCGCATTCGTCGGTTTCTTGTTGAGAT
GGTCATGGCAAAGAGGGCAGAGGATGCTGGGTTAGCAGTGATCGTGTACA
TGGATGAGAGTTTTGTCCACCAGGCTCATGGTTCCCCCTATTTTTTTTTT
CCTTCGGACGAGGATGGAGTTGTGCAGGATGGGATTGGTCGCACAACGGG
GAAGGGCTTGCGCATGATCATGGTGCATGCAATCACGAAGTGGGGGCCGT
TGGCTAAGCTTTGTGATGGGTTACCGATCGAAGAGGGCTGGTTCAAGGAA
ACGGGTAGCGGCAAGAAGGAAATGGAAGATGAGGAGACAGCAGAGTTTCT
GTGGCAGGCTAAGTTGGCAAAGGGCGATTACCACGCAGCAATGACCGACT
CGATGTTCATGGAGTGGCTTGAACACCGCCTTAGCCCTGCGTACAACGCG
ATCCCGGAGTTCAAAGGCAAACGGATGATTCTTGTTCTTGACAACGCCTC
ATACCACCATGGATTTGAGGCGGAAGTCAAAGCGCCGGAAACCAACACCA
AGAAGCACAACGTCGATCTGTTGCGTATGTTTGGGGCCAAGTCGATGAGG
GTTAGGCGTAAGGAGGGCGAACAGGGCGTTGTTGAGTACAACTTCGAGGT
ACCGACAGAGCCTGGTTCTTCATTCCCTGCAGGGAACAGGGAGGGCGGTG
TAAGCAGAGCGGAGGTAGCAACGGCCACTCGGGAGTACATCCACCTCAAT
CACCCTGAAAGGCTCGAGGAACGGGTGGTGACGTTCATGAGGAAAAAGGG
GTGGGCGTTGATTTGGACGCCGCCCTACATGCCGTCCTTTCAACCGATCG
AGCTTTTTTGGCAGCATGGTAAGCAGTACGTCAGCCTTAACTTTGAGTTG
AAGCGAAAGATGCGGGAGGTGTGGGTGCAGATTCGTAAAGGTTGGTACGG
GGACAAGGAATGGCCAGGCCAGGAGGGGGGGTGGAAGGCAGCCGATTGTT
CGAAGCTGGTTGACCACGCCATTGGAGATATGAATAAGTGGGTCAAGGAC
CGTGATGGAGTGCTTTCTGGTACGATAGGCAGCCTCGAAAAGCCGGACGG
GTACGATACAGATGATGTGTCGCCCGTGGGTGATGTCGAGGAAGGGGTAG
GGGAGCAGATCCAGCAGGAAAGCGCAGAATGGGGTGATGGCAGCGACGAG
GTTGAACCATGATGAGATTTTTTTCAGCCTTGTGATCAATTGCTACACCC
ATGCACTGGGTGTACCATGTTCCAACAGCACACATGTGTGTTTGCTGTGC
GCGGGGGGTTGCGTCCCTGCTTCCAGCTGCTGCAGTTGTTGAAAAAAAAA
ATCAAAAATATTCAATTG
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Coding sequence (CDS) from alignment at Scaffold_630:602874..604741+

>EsuBft2673_4a-0001 ID=EsuBft2673_4a-0001|Name=EsuBft2673_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1572bp|location=Sequence derived from alignment at Scaffold_630:602874..604741+ (Ectocarpus subulatus male Bft15b)
ATGTGCGATGTCTCTCTGTGCAATGCCCAAGTTGCGCGCACTTTCAAGAT
CGGCCACGACAAGGTCAGACGCATCAACAACCACTGGTGGGATCACCGCC
AGTTGTACGAGACCACCGCCGTGGGGAGAGGCAAGACGGCAAAGAAGGAT
GATGGGCGACGCCGCCTCACCGAAGTACAAGAAGATCAACTTCGCGAGTT
CATCAATGACGAGCACAAGGCCGGTCGTCAAGTCTTTCGCCGCACGGTGG
CAGAATGGATGCACAGGACTTGCAACATGGAGCAGCCGTCCAACCGTTCG
GCAGGAGGGCTGCTGAGTAGGCTCGGCTACAAGCGTCGTAGAGGCAGGAT
CAAAACGCCACCGTTAAACGCCGAAAGACTTGCTCGCATTCGTCGGTTTC
TTGTTGAGATGGTCATGGCAAAGAGGGCAGAGGATGCTGGGTTAGCAGTG
ATCGTGTACATGGATGAGAGTTTTGTCCACCAGGCTCATGGTTCCCCCTA
TTTTTTTTTTCCTTCGGACGAGGATGGAGTTGTGCAGGATGGGATTGGTC
GCACAACGGGGAAGGGCTTGCGCATGATCATGGTGCATGCAATCACGAAG
TGGGGGCCGTTGGCTAAGCTTTGTGATGGGTTACCGATCGAAGAGGGCTG
GTTCAAGGAAACGGGTAGCGGCAAGAAGGAAATGGAAGATGAGGAGACAG
CAGAGTTTCTGTGGCAGGCTAAGTTGGCAAAGGGCGATTACCACGCAGCA
ATGACCGACTCGATGTTCATGGAGTGGCTTGAACACCGCCTTAGCCCTGC
GTACAACGCGATCCCGGAGTTCAAAGGCAAACGGATGATTCTTGTTCTTG
ACAACGCCTCATACCACCATGGATTTGAGGCGGAAGTCAAAGCGCCGGAA
ACCAACACCAAGAAGCACAACGTCGATCTGTTGCGTATGTTTGGGGCCAA
GTCGATGAGGGTTAGGCGTAAGGAGGGCGAACAGGGCGTTGTTGAGTACA
ACTTCGAGGTACCGACAGAGCCTGGTTCTTCATTCCCTGCAGGGAACAGG
GAGGGCGGTGTAAGCAGAGCGGAGGTAGCAACGGCCACTCGGGAGTACAT
CCACCTCAATCACCCTGAAAGGCTCGAGGAACGGGTGGTGACGTTCATGA
GGAAAAAGGGGTGGGCGTTGATTTGGACGCCGCCCTACATGCCGTCCTTT
CAACCGATCGAGCTTTTTTGGCAGCATGGTAAGCAGTACGTCAGCCTTAA
CTTTGAGTTGAAGCGAAAGATGCGGGAGGTGTGGGTGCAGATTCGTAAAG
GTTGGTACGGGGACAAGGAATGGCCAGGCCAGGAGGGGGGGTGGAAGGCA
GCCGATTGTTCGAAGCTGGTTGACCACGCCATTGGAGATATGAATAAGTG
GGTCAAGGACCGTGATGGAGTGCTTTCTGGTACGATAGGCAGCCTCGAAA
AGCCGGACGGGTACGATACAGATGATGTGTCGCCCGTGGGTGATGTCGAG
GAAGGGGTAGGGGAGCAGATCCAGCAGGAAAGCGCAGAATGGGGTGATGG
CAGCGACGAGGTTGAACCATGA
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