EsuBft2673_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2673_3a-0001
Unique NameEsuBft2673_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:602143..602872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2673_3
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length73
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_3aEsuBft2673_3aEctocarpus subulatus male Bft15bgeneScaffold_630 602143..602872 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_3a-0001-exonEsuBft2673_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 602143..602872 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_3a-0001-exonagat-five_prime_utr-6907Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 602143..602372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_3a-0001-cdsEsuBft2673_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 602373..602633 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_3a-0001-exonagat-three_prime_utr-10769Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 602634..602872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2673_3a-0001EsuBft2673_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 602373..602633 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2673_3a-0001 ID=EsuBft2673_3a-0001|Name=EsuBft2673_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=730bp|location=Sequence derived from alignment at Scaffold_630:602143..602872+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGCGAAGCCGAAGGGCAGGAGGCAGCCAACTGGTGGTGTAGTCGGACGC
CCTTCCAAGTCGGACAAGAGAGCCAAGACAGCAGCAGCGAGAGGTGCGTT
GGCCCAGGAGAGACCCCAAGCTGAGCTCGAGCAGCAACGTGCAGCGCTCG
CGGCGGACAGAGCAGAGATGGCGCAGAGGGAGCAAGCGCTCAGAGCGAAG
GAGGCTGCGTTCGCCTAGAAGGAGCAAGAAATGGCGCGCGCCGCTGCACA
GCGGGAAAAGCGTGAGCAGCAGGAGGTTGAGCGCGTCCAAGCAGCAGCTG
CTGCTGCTGCGGCGAAGAAGGTTGCTCAGGGCCTGGACTACATGGACACA
TCTGTGCACGAAGTGAAGCCGAAGAAGGGCGAGGTCTGGACCCAGTTGCA
GTCAAGGATGGTCCTCATGCTACTCTTCGACCTCCGCAAGGAAGGTTGCT
CTGAGAACGAGGCGGTGTTGCAGGTCAGTACACAGCAGTGAAGGTCGGAT
GATGTGGCACAGCAGCAGGCCGATGTCTTTTGTAAATATTCATCTTGATC
AAAGAGGGGTAACGGTTGGTTTTTGAATCTATACTCCGGAATATGTGCTG
TACACCCTATTTTTGCTGCCAACAGCAGTATGTTCATGTGTGGTGTGTGT
GTTTTCGTTGCATTTATGTCGGGCGCGAGCCTTTGCCGTTCGTTACACGG
TTGACTCACCTGTCTACGTCACACAAATAT
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protein sequence of EsuBft2673_3a-0001

>EsuBft2673_3 ID=EsuBft2673_3|Name=EsuBft2673_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=86bp
MARAAAQREKREQQEVERVQAAAAAAAAKKVAQGLDYMDTSVHEVKPKKG
EVWTQLQSRMVLMLLFDLRKEGCSENEAVLQVSTQQ
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mRNA from alignment at Scaffold_630:602143..602872+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2673_3a-0001 ID=EsuBft2673_3a-0001|Name=EsuBft2673_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=730bp|location=Sequence derived from alignment at Scaffold_630:602143..602872+ (Ectocarpus subulatus male Bft15b)
TGGCGAAGCCGAAGGGCAGGAGGCAGCCAACTGGTGGTGTAGTCGGACGC
CCTTCCAAGTCGGACAAGAGAGCCAAGACAGCAGCAGCGAGAGGTGCGTT
GGCCCAGGAGAGACCCCAAGCTGAGCTCGAGCAGCAACGTGCAGCGCTCG
CGGCGGACAGAGCAGAGATGGCGCAGAGGGAGCAAGCGCTCAGAGCGAAG
GAGGCTGCGTTCGCCTAGAAGGAGCAAGAAATGGCGCGCGCCGCTGCACA
GCGGGAAAAGCGTGAGCAGCAGGAGGTTGAGCGCGTCCAAGCAGCAGCTG
CTGCTGCTGCGGCGAAGAAGGTTGCTCAGGGCCTGGACTACATGGACACA
TCTGTGCACGAAGTGAAGCCGAAGAAGGGCGAGGTCTGGACCCAGTTGCA
GTCAAGGATGGTCCTCATGCTACTCTTCGACCTCCGCAAGGAAGGTTGCT
CTGAGAACGAGGCGGTGTTGCAGGTCAGTACACAGCAGTGAAGGTCGGAT
GATGTGGCACAGCAGCAGGCCGATGTCTTTTGTAAATATTCATCTTGATC
AAAGAGGGGTAACGGTTGGTTTTTGAATCTATACTCCGGAATATGTGCTG
TACACCCTATTTTTGCTGCCAACAGCAGTATGTTCATGTGTGGTGTGTGT
GTTTTCGTTGCATTTATGTCGGGCGCGAGCCTTTGCCGTTCGTTACACGG
TTGACTCACCTGTCTACGTCACACAAATAT
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Coding sequence (CDS) from alignment at Scaffold_630:602143..602872+

>EsuBft2673_3a-0001 ID=EsuBft2673_3a-0001|Name=EsuBft2673_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=261bp|location=Sequence derived from alignment at Scaffold_630:602143..602872+ (Ectocarpus subulatus male Bft15b)
ATGGCGCGCGCCGCTGCACAGCGGGAAAAGCGTGAGCAGCAGGAGGTTGA
GCGCGTCCAAGCAGCAGCTGCTGCTGCTGCGGCGAAGAAGGTTGCTCAGG
GCCTGGACTACATGGACACATCTGTGCACGAAGTGAAGCCGAAGAAGGGC
GAGGTCTGGACCCAGTTGCAGTCAAGGATGGTCCTCATGCTACTCTTCGA
CCTCCGCAAGGAAGGTTGCTCTGAGAACGAGGCGGTGTTGCAGGTCAGTA
CACAGCAGTGA
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