EsuBft2660_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2660_2a-0001
Unique Name	EsuBft2660_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_627	contig	Scaffold_627:435668..437757 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2660_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	209
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2660_2a	EsuBft2660_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_627 435668..437757 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2660_2a-0001-exon	EsuBft2660_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_627 435668..437757 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2660_2a-0001-cds	EsuBft2660_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_627 435668..435922 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2660_2a-0001-exon	agat-three_prime_utr-10727	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_627 435923..437757 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2660_2a-0001	EsuBft2660_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_627 435668..435922 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_627:435668..437757+
coding sequence from alignment at Scaffold_627:435668..437757+

spliced messenger RNA

>EsuBft2660_2a-0001 ID=EsuBft2660_2a-0001|Name=EsuBft2660_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2090bp|location=Sequence derived from alignment at Scaffold_627:435668..437757+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCATCCCCGAACCAAAACGCCACAACGTACTATACTGACTCCACG
ACTGGGGGGGGTTGTCAGGGGGCTCAATGAATGTATTGGTGTGTTTGCCA
AGTTGCCAAGTACCACGCTCACCACAGCAAAAGTGGTACACATCGCTGCT
GAGGAGAGAGCTATCAAGATGAACGAAGACCAGGGGCAGGCCGCGTACGG
TGAGTTTCGTAGCGACTACGTTGGGGCAGCTTTGCCTTCTCTGTCCCACG
GGTGATTGCCGTGACAAGACCTGGACGCCAGTGAACAGGAAAAATGCACC
GCTCTCTCTCTGCGCGTGTTTCGTAGAATCCTACGAGATGTTGGATGTTT
AACCCCATCGTGGTCAAGGGAAGGCAGGCTTACTACCCTTGCATCTGGTT
GCCTCGCCATCCTTAGCGAGAGTATTAAGTGTGGTCGAAGGACAGCAATG
AGCGCACTATTCCCGACAGCAGGCGGCTGCCTCCCTAGCACAGCAGCACT
TCTGTGTCGCTCCTGTCGCCGTTGCCTTGTTCTCTCAACGATTTGTTAGA
AGGACCCACAAGCGACAGACTCTCCGTTGGGTGTGCTCTTCTACATACCA
TCGCACCCATACGGATTCTTCGAGTTTACTCCCACAAGAGAGAGAAAAGC
GGCAGTGCCTTCATGAATCTTGCACGCAGAGGGTCAGAATTGTGCCTACA
CACATGCCGACTGGCTGACCCCGGAGCAGCAGTTTCTGCTTTGTGCTGCA
AAGTCGACCGAACATGCAAGGTACTGCTGTAGCACGTCGGACAGCAAGGC
AACGCAGAGTCTGCTGTTTGCTGCTCATGTCGGACCGAAAATGTACAACA
TTAGTAGGAGAGAGCAAAGGAGCAAAGGGCGGGCGTATGCATAAGCTGTC
GCACATGCATATACGGATGAATGTTTGCGAACCAAGAGCTTCGCTTCACA
TGCACGGGCGGACCGCACGCTTTGATACAGCAGCACGGAAGCCACACAGA
GACAGGTTTCACTGCCGTAGGGACGAAATGTCCGATGTGTGGATTTGATA
TTTGCTGTTGCGCAGATTGGGGACTGGATCTAGAGGCCCTGTACTATCGA
AGTGCCAAAAATCAGTATCGAATATCAAAATCAACCGAAAAAAGGGGGCC
CGCGGATAACAGGAGGGGTCGGGAAAAGGAGTCAGTAACAGACCTGACGC
TAGGGCAAGAGCCAGCAGCCAAGCGATATTTTCCTCGAGAGTATACTTGT
GCGCTCTTCTGTTCACGTGTTCACCGATATCTCGCTGAACAAGGGACGAG
GTGCACCAAGCAATGGTATCCTGTAGAAGGTGGAGCTACGGGCTGTTGGA
TAACGCCAAGGTTTGGCGCCGTGAGGTGCCGCCTGCGCCCTACAAAAAGA
GTCGGTTGGTAAACGTTGACACAAAAATGCGAACGGCCGAGAGCGGCTGG
TAGGAGTGCAGTGTTGCAGACTGCCACGGGTTTGGTTGTACAGGTAAAGC
TTCTCGAGGGAGGAAGGAACAGCAATGGCATTACTAGTCCGAGAGAGGTA
GGTCTACTGCTGTTGATCTTTCTTGGACGAGGCTTGATGCCTTGGGGTAT
CGTGAGTGTCGAGAAAAATAGTTGCGTGTTCGCTCTCCCGCACGGAAAAG
GCCAAAGAAATCGCGTCAGCTCTCTACTTTTATCATCAGTCTCTTTGCCA
CTTGTGACGATCGGCATTTTCTCATCGAGAACCTAACGAGCCGGCCCGGT
TTTAGGCCTGCCAGTGAGCAGAGTGATCTGGCTACCCATGGCTCTCGGTG
GTACGGTGTCGATAGCCTCTCTATGAGCAACGTACAGCAGGTCGTATGGT
GCACTGCTTTGCAGCGGCCCCGCGGCAATTGTTGGAACAACCCACCCGCG
CTTTCCCCGCAGCTCCGCAGCTGTCTTGGATGACTTTGATTTTGATCTGA
AATGTAGATACCTCGGGGACTTCTTTCCCCAGGCAGGAATTGGCTAAATA
TCAAGGACGGCGCCTGGAGGTATGCGAGCATGCCGACCAAACAGAGCTCA
ATTTCGATTTCGTCTTTTGGTGCTGCGTTGAGATGTAGAG

protein sequence of EsuBft2660_2a-0001

>EsuBft2660_2 ID=EsuBft2660_2|Name=EsuBft2660_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=84bp
MVHPRTKTPQRTILTPRLGGVVRGLNECIGVFAKLPSTTLTTAKVVHIAA
EERAIKMNEDQGQAAYGEFRSDYVGAALPSLSHG

mRNA from alignment at Scaffold_627:435668..437757+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2660_2a-0001 ID=EsuBft2660_2a-0001|Name=EsuBft2660_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2090bp|location=Sequence derived from alignment at Scaffold_627:435668..437757+ (Ectocarpus subulatus male Bft15b)
ATGGTCCATCCCCGAACCAAAACGCCACAACGTACTATACTGACTCCACG
ACTGGGGGGGGTTGTCAGGGGGCTCAATGAATGTATTGGTGTGTTTGCCA
AGTTGCCAAGTACCACGCTCACCACAGCAAAAGTGGTACACATCGCTGCT
GAGGAGAGAGCTATCAAGATGAACGAAGACCAGGGGCAGGCCGCGTACGG
TGAGTTTCGTAGCGACTACGTTGGGGCAGCTTTGCCTTCTCTGTCCCACG
GGTGATTGCCGTGACAAGACCTGGACGCCAGTGAACAGGAAAAATGCACC
GCTCTCTCTCTGCGCGTGTTTCGTAGAATCCTACGAGATGTTGGATGTTT
AACCCCATCGTGGTCAAGGGAAGGCAGGCTTACTACCCTTGCATCTGGTT
GCCTCGCCATCCTTAGCGAGAGTATTAAGTGTGGTCGAAGGACAGCAATG
AGCGCACTATTCCCGACAGCAGGCGGCTGCCTCCCTAGCACAGCAGCACT
TCTGTGTCGCTCCTGTCGCCGTTGCCTTGTTCTCTCAACGATTTGTTAGA
AGGACCCACAAGCGACAGACTCTCCGTTGGGTGTGCTCTTCTACATACCA
TCGCACCCATACGGATTCTTCGAGTTTACTCCCACAAGAGAGAGAAAAGC
GGCAGTGCCTTCATGAATCTTGCACGCAGAGGGTCAGAATTGTGCCTACA
CACATGCCGACTGGCTGACCCCGGAGCAGCAGTTTCTGCTTTGTGCTGCA
AAGTCGACCGAACATGCAAGGTACTGCTGTAGCACGTCGGACAGCAAGGC
AACGCAGAGTCTGCTGTTTGCTGCTCATGTCGGACCGAAAATGTACAACA
TTAGTAGGAGAGAGCAAAGGAGCAAAGGGCGGGCGTATGCATAAGCTGTC
GCACATGCATATACGGATGAATGTTTGCGAACCAAGAGCTTCGCTTCACA
TGCACGGGCGGACCGCACGCTTTGATACAGCAGCACGGAAGCCACACAGA
GACAGGTTTCACTGCCGTAGGGACGAAATGTCCGATGTGTGGATTTGATA
TTTGCTGTTGCGCAGATTGGGGACTGGATCTAGAGGCCCTGTACTATCGA
AGTGCCAAAAATCAGTATCGAATATCAAAATCAACCGAAAAAAGGGGGCC
CGCGGATAACAGGAGGGGTCGGGAAAAGGAGTCAGTAACAGACCTGACGC
TAGGGCAAGAGCCAGCAGCCAAGCGATATTTTCCTCGAGAGTATACTTGT
GCGCTCTTCTGTTCACGTGTTCACCGATATCTCGCTGAACAAGGGACGAG
GTGCACCAAGCAATGGTATCCTGTAGAAGGTGGAGCTACGGGCTGTTGGA
TAACGCCAAGGTTTGGCGCCGTGAGGTGCCGCCTGCGCCCTACAAAAAGA
GTCGGTTGGTAAACGTTGACACAAAAATGCGAACGGCCGAGAGCGGCTGG
TAGGAGTGCAGTGTTGCAGACTGCCACGGGTTTGGTTGTACAGGTAAAGC
TTCTCGAGGGAGGAAGGAACAGCAATGGCATTACTAGTCCGAGAGAGGTA
GGTCTACTGCTGTTGATCTTTCTTGGACGAGGCTTGATGCCTTGGGGTAT
CGTGAGTGTCGAGAAAAATAGTTGCGTGTTCGCTCTCCCGCACGGAAAAG
GCCAAAGAAATCGCGTCAGCTCTCTACTTTTATCATCAGTCTCTTTGCCA
CTTGTGACGATCGGCATTTTCTCATCGAGAACCTAACGAGCCGGCCCGGT
TTTAGGCCTGCCAGTGAGCAGAGTGATCTGGCTACCCATGGCTCTCGGTG
GTACGGTGTCGATAGCCTCTCTATGAGCAACGTACAGCAGGTCGTATGGT
GCACTGCTTTGCAGCGGCCCCGCGGCAATTGTTGGAACAACCCACCCGCG
CTTTCCCCGCAGCTCCGCAGCTGTCTTGGATGACTTTGATTTTGATCTGA
AATGTAGATACCTCGGGGACTTCTTTCCCCAGGCAGGAATTGGCTAAATA
TCAAGGACGGCGCCTGGAGGTATGCGAGCATGCCGACCAAACAGAGCTCA
ATTTCGATTTCGTCTTTTGGTGCTGCGTTGAGATGTAGAG

Coding sequence (CDS) from alignment at Scaffold_627:435668..437757+

>EsuBft2660_2a-0001 ID=EsuBft2660_2a-0001|Name=EsuBft2660_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=255bp|location=Sequence derived from alignment at Scaffold_627:435668..437757+ (Ectocarpus subulatus male Bft15b)
ATGGTCCATCCCCGAACCAAAACGCCACAACGTACTATACTGACTCCACG
ACTGGGGGGGGTTGTCAGGGGGCTCAATGAATGTATTGGTGTGTTTGCCA
AGTTGCCAAGTACCACGCTCACCACAGCAAAAGTGGTACACATCGCTGCT
GAGGAGAGAGCTATCAAGATGAACGAAGACCAGGGGCAGGCCGCGTACGG
TGAGTTTCGTAGCGACTACGTTGGGGCAGCTTTGCCTTCTCTGTCCCACG
GGTGA