EsuBft2647_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2647_5a-0001
Unique Name	EsuBft2647_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_385	contig	Scaffold_385:318112..323945 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FPB8
ProteomeId	EsuBft2647_5
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	216
Hectar predicted targeting category	other localisation
Evalue	1.23e-08
EggNOG OGs	KOG1471@1\|root,KOG1471@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	macromolecule localization
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2647_5a	EsuBft2647_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_385 318112..323945 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2647_5a-0001	EsuBft2647_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_385 318151..322612 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2647_5a-0001-exon	EsuBft2647_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_385 318112..318471 +
EsuBft2647_5a-0001-exon	agat-exon-36696	Ectocarpus subulatus male Bft15b	exon	Scaffold_385 321917..323291 +
EsuBft2647_5a-0001-exon	agat-exon-36695	Ectocarpus subulatus male Bft15b	exon	Scaffold_385 323514..323945 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2647_5a-0001-exon	agat-five_prime_utr-6846	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_385 318112..318150 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2647_5a-0001-cds	EsuBft2647_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_385 318151..318471 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2647_5a-0001-exon	agat-three_prime_utr-10670	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_385 322613..323291 +
EsuBft2647_5a-0001-exon	agat-three_prime_utr-10671	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_385 323514..323945 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_385:318112..323945+
coding sequence from alignment at Scaffold_385:318112..323945+

spliced messenger RNA

>EsuBft2647_5a-0001 ID=EsuBft2647_5a-0001|Name=EsuBft2647_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2167bp|location=Sequence derived from alignment at Scaffold_385:318112..323945+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTGTTTTCCCCTGTTTTTTGGCGCTCTCTCCTTGAATCATGAACGCTAT
CGCTGGGTTTGACCCTGCCGTGTTGGAAGTCCCCACCGAGTACGACGAGT
TCCTCGACATCTTCGCCAAGGCGGCCACGCCGGGCGGCATCCGGGCCATC
AACCTCCACTGCATCGGCGCCCTTCCGCACGGGCGTCCGCTGGAGGGCGC
GTCTCTCGACGGCGTGTCGGCGCTTTTCCTCGCCCTCACGCAGGCGGGTG
ACGCAGCCACGCCCCCCGAGATTTTCAAGGTCGGCCTGGCCGCTCGTGCC
GCAGGAGTGTCCGACGAGGACAACGACGCCCGCGTGAAGCGGGCCCTCGT
CCAGGCACTGTTCAAAGCCACGTGGTCGACGCTCCTCACGCTGATAAGCG
GTATTACGGCTTTCGGGAGGCACGACAAGCACAACCGCATCCAGGAGATC
CAGCGCGTTCTCGCGGAGTTGGAGCGTGTGCTTGCACTTGACACCTCGCT
CGTCGAGGAGAAGGTGTTCGTCCACAATCGCGTCGTTGGACTGGAGACCG
CCGTGAGGAGCAACCAAATAGATTCCGGGGCGGTGTGGGTGCACGACAAA
CTCATGTCGACCACCGAGGAAGGTCAAAAGACCGACCGCGACCAAATAGT
GAAGGAGCTGTCGTCCATCTCCAAGTTCCTCACCGGGCCAAAGCGCGCGG
CACCGATGCCGCCGATCGCTTTCTCGCCCCACTTCGGCGGGTACGGGGGC
GGCGGCTTCGGTGGCGGCGGCTACGGCGGCGGCTACGGCGGCGGTGGGCA
CGGGGGCGGTGGTCCAGGCGGGCGCGGCCACGGAGGGGCCAATCAGTACG
GCCCGCCGGGCCAGTACGGGCCGCCGCGGGGTTTCGGCAAGCGTGGCCGG
AACCAGGGCGGAGCAAAAAGGCCGGCTATGTGCAACACGTGCCGCCGGGC
GGGAAAGAGTGGCGCCGATATCGCGCACTCGTACAAGGTGTGCCCCATGG
TGCAATGCCACAAGTGCCGGGGATACGGGCATGTTCTTCAGAACTGCCCC
AACTAGTTAGATCGAACTGGATTTTTTGCCCATGTCTCTTTTTATGCCAT
CCGTACTCTCGCGGTGCGCCCTTTGTCTTCTCTTTCAGACACGGCGCCAG
AACATGTTAAGTTCTGATTAGCATGGTGGTTTTCTGTTGCTACCTCGGAA
TTTGGGGGTCGATTCCCTCGTAGTTCGGGCTCGCGGGCCTACCAGCGGGG
GTAGTGTTCCGCCTGTTACTTGGCAAGTTTCCTCTTTTCGTCGACACGAT
CAGTTTTCTCTCTCTCAAAAACGAAGGCTACCAAACTTGGTTGTCTTTCT
TGCAACCTACGTATCCACGTTCGGTTTTAGGCGGACGGGCTGTGGGGAAT
CCACATACGCCGGCGATACACACCGGCATAATCTCGGATCTCTTTTCACT
GAGACGATGGCCGACGCTTTTCGGTGTCCAAATAAGATCGCAGNNNNNNN
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NNNNNNNGTGTCCAAATAAGATCGCAGATGCTGCCCTTATCTTTGTGTGG
CTTCATTCTTTGACGCACGCCGTCTTACAGCCTCGTTTTACGCCGCAAAG
ATAGGCGCACCCTTTTGGTACTTTTACATAATCAGGTCCGCAACAACGGT
ACGACCAAATCAAAGCACATTTACACGCAAACCCAATCAAAAGTAGATTT
CGTTATTTACTTTGCTTCAGGTCGGGTCGGGAGCCAAATCTTTTCTGGCA
GAGCGAGCAGAGCGAACAGCACGCGTCCGTACCCAGAACGTGGGTGGCGT
TTTTCTCAGCGCTAAATCGCCACAAACGCCCACCGACCTCTCAAACATCG
ATACGCTCCGGGAGTCTTGCCGCACTCCCGACCACGCTCGCATGTGGGCA
CCGGGCGATTTCGTGCCGGCGCACCTCCAGACAGCCGCCGATTTCTGGAG
CGAGGAGATTCTGCTAGAAACGGCCGAGAGTGACAGAGCCACCCTTTTAG
GTTGGGTGGAAGGCGTGAATCTCCACGATTTCATTGACAAAAACTCGAGG
GGCGTGTTCCAAGGCCT

protein sequence of EsuBft2647_5a-0001

>EsuBft2647_5 ID=EsuBft2647_5|Name=EsuBft2647_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=338bp
MNAIAGFDPAVLEVPTEYDEFLDIFAKAATPGGIRAINLHCIGALPHGRP
LEGASLDGVSALFLALTQAGDAATPPEIFKVGLAARAAGVSDEDNDARVK
RALVQALFKATWSTLLTLISGITAFGRHDKHNRIQEIQRVLAELERVLAL
DTSLVEEKVFVHNRVVGLETAVRSNQIDSGAVWVHDKLMSTTEEGQKTDR
DQIVKELSSISKFLTGPKRAAPMPPIAFSPHFGGYGGGGFGGGGYGGGYG
GGGHGGGGPGGRGHGGANQYGPPGQYGPPRGFGKRGRNQGGAKRPAMCNT
CRRAGKSGADIAHSYKVCPMVQCHKCRGYGHVLQNCPN

mRNA from alignment at Scaffold_385:318112..323945+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2647_5a-0001 ID=EsuBft2647_5a-0001|Name=EsuBft2647_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5834bp|location=Sequence derived from alignment at Scaffold_385:318112..323945+ (Ectocarpus subulatus male Bft15b)
TTTGTTTTCCCCTGTTTTTTGGCGCTCTCTCCTTGAATCATGAACGCTAT
CGCTGGGTTTGACCCTGCCGTGTTGGAAGTCCCCACCGAGTACGACGAGT
TCCTCGACATCTTCGCCAAGGCGGCCACGCCGGGCGGCATCCGGGCCATC
AACCTCCACTGCATCGGCGCCCTTCCGCACGGGCGTCCGCTGGAGGGCGC
GTCTCTCGACGGCGTGTCGGCGCTTTTCCTCGCCCTCACGCAGGCGGGTG
ACGCAGCCACGCCCCCCGAGATTTTCAAGGTCGGCCTGGCCGCTCGTGCC
GCAGGAGTGTCCGACGAGGACAACGACGCCCGCGTGAAGCGGGCCCTCGT
CCAGGCACTGGTATCGTACCTGTGGCGATGCACGGACCATGGCGGCCTGA
AAATGTCCACGGCAGGCGCATACCTCCCGGCCGACCCGGCCATGTCAGGC
CCTCCCGCAGCTGCTGCGTCCGCCAAGGAGGCCCCGCCCATCGCGCACCC
TGACATCGCCGGCACCAAGCGCCTTCTGGACGAGATCTCCCGGGGANNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTCCCGATGCTGCCCTTTT
CTCAGTTCAAAGCCACGTGGTCGACGCTCCTCACGCTGATAAGCGGTATT
ACGGCTTTCGGGAGGCACGACAAGCACAACCGCATCCAGGAGATCCAGCG
CGTTCTCGCGGAGTTGGAGCGTGTGCTTGCACTTGACACCTCGCTCGTCG
AGGAGAAGGTGTTCGTCCACAATCGCGTCGTTGGACTGGAGACCGCCGTG
AGGAGCAACCAAATAGATTCCGGGGCGGTGTGGGTGCACGACAAACTCAT
GTCGACCACCGAGGAAGGTCAAAAGACCGACCGCGACCAAATAGTGAAGG
AGCTGTCGTCCATCTCCAAGTTCCTCACCGGGCCAAAGCGCGCGGCACCG
ATGCCGCCGATCGCTTTCTCGCCCCACTTCGGCGGGTACGGGGGCGGCGG
CTTCGGTGGCGGCGGCTACGGCGGCGGCTACGGCGGCGGTGGGCACGGGG
GCGGTGGTCCAGGCGGGCGCGGCCACGGAGGGGCCAATCAGTACGGCCCG
CCGGGCCAGTACGGGCCGCCGCGGGGTTTCGGCAAGCGTGGCCGGAACCA
GGGCGGAGCAAAAAGGCCGGCTATGTGCAACACGTGCCGCCGGGCGGGAA
AGAGTGGCGCCGATATCGCGCACTCGTACAAGGTGTGCCCCATGGTGCAA
TGCCACAAGTGCCGGGGATACGGGCATGTTCTTCAGAACTGCCCCAACTA
GTTAGATCGAACTGGATTTTTTGCCCATGTCTCTTTTTATGCCATCCGTA
CTCTCGCGGTGCGCCCTTTGTCTTCTCTTTCAGACACGGCGCCAGAACAT
GTTAAGTTCTGATTAGCATGGTGGTTTTCTGTTGCTACCTCGGAATTTGG
GGGTCGATTCCCTCGTAGTTCGGGCTCGCGGGCCTACCAGCGGGGGTAGT
GTTCCGCCTGTTACTTGGCAAGTTTCCTCTTTTCGTCGACACGATCAGTT
TTCTCTCTCTCAAAAACGAAGGCTACCAAACTTGGTTGTCTTTCTTGCAA
CCTACGTATCCACGTTCGGTTTTAGGCGGACGGGCTGTGGGGAATCCACA
TACGCCGGCGATACACACCGGCATAATCTCGGATCTCTTTTCACTGAGAC
GATGGCCGACGCTTTTCGGTGTCCAAATAAGATCGCAGNNNNNNNNNNNN
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NNGTGTCCAAATAAGATCGCAGATGCTGCCCTTATCTTTGTGTGGCTTCA
TTCTTTGACGCACGCCGTCTTACAGCCTCGTTTTACGCCGCAAAGATAGG
CGCACCCTTTTGGTACTTTTACATAATCAGGTACAGGTAGACACTGAAAT
GATACATGTCTTTCTCAAGCAATCTCCAGTCCGTTCCTCTGCACCACGCC
GTTTTCTTGGCTGGGCTTTCGTCGACCGTTGAACGCGCGGATCGATTCAC
ATAGAGTATTCCACGCACACATCGTAACTTATTGTTTCGAGACATCCATT
TCCACTTTTCTGTTTTCGAACACGGCAAATACAACTACACTACAGTATGT
AGGTCCGCAACAACGGTACGACCAAATCAAAGCACATTTACACGCAAACC
CAATCAAAAGTAGATTTCGTTATTTACTTTGCTTCAGGTCGGGTCGGGAG
CCAAATCTTTTCTGGCAGAGCGAGCAGAGCGAACAGCACGCGTCCGTACC
CAGAACGTGGGTGGCGTTTTTCTCAGCGCTAAATCGCCACAAACGCCCAC
CGACCTCTCAAACATCGATACGCTCCGGGAGTCTTGCCGCACTCCCGACC
ACGCTCGCATGTGGGCACCGGGCGATTTCGTGCCGGCGCACCTCCAGACA
GCCGCCGATTTCTGGAGCGAGGAGATTCTGCTAGAAACGGCCGAGAGTGA
CAGAGCCACCCTTTTAGGTTGGGTGGAAGGCGTGAATCTCCACGATTTCA
TTGACAAAAACTCGAGGGGCGTGTTCCAAGGCCT

Coding sequence (CDS) from alignment at Scaffold_385:318112..323945+

>EsuBft2647_5a-0001 ID=EsuBft2647_5a-0001|Name=EsuBft2647_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1017bp|location=Sequence derived from alignment at Scaffold_385:318112..323945+ (Ectocarpus subulatus male Bft15b)
ATGAACGCTATCGCTGGGTTTGACCCTGCCGTGTTGGAAGTCCCCACCGA
GTACGACGAGTTCCTCGACATCTTCGCCAAGGCGGCCACGCCGGGCGGCA
TCCGGGCCATCAACCTCCACTGCATCGGCGCCCTTCCGCACGGGCGTCCG
CTGGAGGGCGCGTCTCTCGACGGCGTGTCGGCGCTTTTCCTCGCCCTCAC
GCAGGCGGGTGACGCAGCCACGCCCCCCGAGATTTTCAAGGTCGGCCTGG
CCGCTCGTGCCGCAGGAGTGTCCGACGAGGACAACGACGCCCGCGTGAAG
CGGGCCCTCGTCCAGGCACTGTTCAAAGCCACGTGGTCGACGCTCCTCAC
GCTGATAAGCGGTATTACGGCTTTCGGGAGGCACGACAAGCACAACCGCA
TCCAGGAGATCCAGCGCGTTCTCGCGGAGTTGGAGCGTGTGCTTGCACTT
GACACCTCGCTCGTCGAGGAGAAGGTGTTCGTCCACAATCGCGTCGTTGG
ACTGGAGACCGCCGTGAGGAGCAACCAAATAGATTCCGGGGCGGTGTGGG
TGCACGACAAACTCATGTCGACCACCGAGGAAGGTCAAAAGACCGACCGC
GACCAAATAGTGAAGGAGCTGTCGTCCATCTCCAAGTTCCTCACCGGGCC
AAAGCGCGCGGCACCGATGCCGCCGATCGCTTTCTCGCCCCACTTCGGCG
GGTACGGGGGCGGCGGCTTCGGTGGCGGCGGCTACGGCGGCGGCTACGGC
GGCGGTGGGCACGGGGGCGGTGGTCCAGGCGGGCGCGGCCACGGAGGGGC
CAATCAGTACGGCCCGCCGGGCCAGTACGGGCCGCCGCGGGGTTTCGGCA
AGCGTGGCCGGAACCAGGGCGGAGCAAAAAGGCCGGCTATGTGCAACACG
TGCCGCCGGGCGGGAAAGAGTGGCGCCGATATCGCGCACTCGTACAAGGT
GTGCCCCATGGTGCAATGCCACAAGTGCCGGGGATACGGGCATGTTCTTC
AGAACTGCCCCAACTAG