EsuBft2647_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2647_4a-0001
Unique NameEsuBft2647_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_385contigScaffold_385:313246..317195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft2647_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl33208|Metazoa
Length184
Hectar predicted targeting categoryother localisation
Evalue3.46e-08
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2647_4aEsuBft2647_4aEctocarpus subulatus male Bft15bgeneScaffold_385 313246..317195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2647_4a-0001EsuBft2647_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_385 313681..317195 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2647_4a-0001-exonagat-exon-36694Ectocarpus subulatus male Bft15bexonScaffold_385 313246..313976 -
EsuBft2647_4a-0001-exonagat-exon-36692Ectocarpus subulatus male Bft15bexonScaffold_385 315243..315338 -
EsuBft2647_4a-0001-exonEsuBft2647_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_385 316100..317034 -
EsuBft2647_4a-0001-exonagat-exon-36693Ectocarpus subulatus male Bft15bexonScaffold_385 317116..317195 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2647_4a-0001-exonagat-three_prime_utr-10669Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_385 313246..313680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2647_4a-0001-cdsEsuBft2647_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_385 313681..313976 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2647_4a-0001 ID=EsuBft2647_4a-0001|Name=EsuBft2647_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1842bp|location=Sequence derived from alignment at Scaffold_385:313246..317195- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAACATCGACGACGTAGACGACCCCATCGTGATCGAAGACTTCCA
CGCCATTCTCGTCAAAGTGTGGAACAGGAGGGGGATATCCCTTCTGTCGC
ATGCGGGCACGGTGCTCCAAAAAATCGTCGGAAAACCTCTCAGCGACTAC
TACTGCGAGAAACACGACATCTTGCCGGAAGAGCAGTGCGCCTTCCGACC
TGGCAGGTCAACCGTCGACACGATGTTCGTCGTTCAACGACTGCAGGAGC
TGTCAAGGAGACGGAATATCCCTGCTTCGTCGACCTCCAGAAGGCCTATG
ACTCAGTCGACCGGGCACTACTATGGCAGGTGCTGGCCTGAGCGGGGATC
CAAGGAAATGATCGCGGACATCCGCCACTTCCACATAAACTATATATGTA
AGGCCATTTGTTACGATGCCTTTCTTGAGGCTGTCTTTTTTTCCCGAAAG
AGAAGACCCAAAAATTACAACAAGAAAAAGATGGCCCCTGTGCTGCTACG
TCTTTTTCTGAAGGTGGGGTTTCTTGATGATTTTCACCGGCGTTCGGCGT
GCGGGAGCGAACTAATTTTTGAATTTCCGCCATCACCCACGCCACAGACC
GCGCACAGCACAAAACACAACGCCCTTCTGCACCCCTTCCACTGCACACA
GCCACATCCCGTAAAGCAGACCATTGATGCTATGAAACTAGATGGCGTAC
AGTCTCTCCCGCTGAAGTTCAACTCGTACGCCGAGGCAGTGATTTCGATG
CTGCGGGACAGGAGCTCCGGCCTGACGGACGCCAAGTTGCTGAAGCACCT
CCAGAACGGGTGCATCGTGTACGCGTGCTTGGCGGTCAAGCGCAACGCCG
GGATTGTCTCCACACAGGCCAGGCACGCGGCAGCGGCGCAGGGGTACAAG
GACATCGCTGTCCCTGGCTTCATCAAGCGGCTCCAGGAAAACTTGGACAA
GGAGGATTTCTTCTTGCAGCCGTGGCTCACGTGCGAGGTCATGGGGAAGT
CGTCTATGAAGGGAGGCGCGGTCCTCTTCACCGACGGCGAAAAATTGTGG
AAGCGGTTCGACAAAATCCTGCGCGAACAAGAAATACTACAACCCCGTGT
GGGACAGTTGTTTTCGTCGAAGGACAACCTGGGGACCAACTACCGTCGGG
CAGCCAAGACGAAGACGCCATCGAGTACCTTCTGGACGGAGTCTACCACA
TGGAATCCGGAACGGGGAACGCAGAGGACCCGATCGAGTTGGAAGAGAGG
GGTGGCGGTGAGGGAGAGGGTTCGGAAGATGACTCTGGGGAATCGTCACC
GACGGAGAGCGAGGACGGCGGGAGTGGAAAGCAGAAAGGAACGGAGGAAG
CAGTGGAGCCACAGGAAAGCAGCGGTGATGACTCACCGGCGGGGGAGGGG
GGGATGAAGAAGGAGCCAGAAGACGATACGCCGGGCAACGGGGATGATGC
CCCCTCCGAAGAAATCACACGAGAAGAGGGCGGGTTTCCGCAGAGGCCCA
ACAAGTGGATGCACCAGTATCTCCTGACATTCTGTTTGATCGGAAGGCCA
TGCAGCAGCGAGGACCCTGACCTCCGAACCGCACGCAAAACATCCGGACC
CAAGGGTCGCGGCGCGTCCGGGGCCAAGGGTCGCGGCGGGAAGCAGAAGG
CGAAGAAAGGGTCACCCGGCACCAGCGACGAAAGCGGGTCGGAGGCGAGC
GGTGCGTACACCGAGGTTGATCTGTCGTCCAACGCGATCCGGATGTTCAC
AGGGGCCGGCGAAATTCAAAGCCGAGCACAGGTGAAGAAGGAGACTGCTG
CGGTAGCGGCCGCCAACGCGCAACTGCAGGCCCGCCGCGTCC
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protein sequence of EsuBft2647_4a-0001

>EsuBft2647_4 ID=EsuBft2647_4|Name=EsuBft2647_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=468bp
MLNIDDVDDPIVIEDFHAILVKVWNRRGISLLSHAGTVLQKIVGKPLSDY
YCEKHDILPEEQCAFRPGRSTVDTMFVVQRLQELSRRRNIPASSTSRRPM
TQSTGHYYGRCWPERGSKEMIADIRHFHINYICKAICYDAFLEAVFFSRK
RRPKNYNKKKMAPVLLRLFLKVGFLDDFHRRSACGSELIFEFPPSPTPQT
AHSTKHNALLHPFHCTQPHPVKQTIDAMKLDGVQSLPLKFNSYAEAVISM
LRDRSSGLTDAKLLKHLQNGCIVYACLAVKRNAGIVSTQARHAAAAQGYK
DIAVPGFIKRLQENLDKEDFFLQPWLTCEVMGKSSMKGGAVLFTDGEKLW
KRFDKILREQEILQPRVGQLFSSKDNLGTNYRRAAKTKTPSSTFWTESTT
WNPERGTQRTRSSWKRGVAVRERVRKMTLGNRHRRRARTAGVESRKERRK
QWSHRKAAVMTHRRGRGG
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mRNA from alignment at Scaffold_385:313246..317195-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2647_4a-0001 ID=EsuBft2647_4a-0001|Name=EsuBft2647_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3950bp|location=Sequence derived from alignment at Scaffold_385:313246..317195- (Ectocarpus subulatus male Bft15b)
ATGCTCAACATCGACGACGTAGACGACCCCATCGTGATCGAAGACTTCCA
CGCCATTCTCGTCAAAGTGTGGAACAGGAGGTAGGTCCCCCAGGAATGGA
AAGATGCCACCATCAAGATACTCTACAAGAAGGCGGACCGATCCTATTGA
AACAAATACAGGGGGATATCCCTTCTGTCGCATGCGGGCACGGTGCTCCA
AAAAATCGTCGGAAAACCTCTCAGCGACTACTACTGCGAGAAACACGACA
TCTTGCCGGAAGAGCAGTGCGCCTTCCGACCTGGCAGGTCAACCGTCGAC
ACGATGTTCGTCGTTCAACGACTGCAGGAGCTGTCAAGGAGACGGAATAT
CCCTGCTTCGTCGACCTCCAGAAGGCCTATGACTCAGTCGACCGGGCACT
ACTATGGCAGGTGCTGGCCTGAGCGGGGATCCAAGGAAATGATCGCGGAC
ATCCGCCACTTCCACATAAACTATATATGTAAGGCCATTTGTTACGATGC
CTTTCTTGAGGCTGTCTTTTTTTCCCGAAAGAGAAGACCCAAAAATTACA
ACAAGAAAAAGATGGCCCCTGTGCTGCTACGTCTTTTTCTGAAGGTGGGG
TTTCTTGATGATTTTCACCGGCGTTCGGCGTGCGGGAGCGAACTAATTTT
TGAATTTCCGCCATCACCCACGCCACAGACCGCGCACAGCACAAAACACA
ACGCCCTTCTGCACCCCTTCCACTGCACACAGCCACATCCCGTAAAGCAG
ACCATTGATGCTATGAAACTAGATGGCGTACAGTCTCTCCCGCTGAAGTT
CAACTCGTACGCCGAGGCAGTGATTTCGATGCTGCGGGACAGGAGCTCCG
GCCTGACGGACGCCAAGTTGCTGAAGCACCTCCAGAACGGGTGCATCGTG
TACGCGTGCTTGGCGGTCAAGCGCAACGCCGGGATTGTCTCCACACAGGC
CAGGCACGCGGCAGCGGCGCAGGGGTACAAGGACATCGCTGTCCCTGGCT
TCATCAAGCGGCTCCAGGAAAACTTGGACAAGGAGGATTTCTTCTTGCAG
CCGTGGCTCACGTGCGAGGTCATGGGGAAGTCGTCTATGAAGGGAGGTAA
GACACAACCAACGCGGGAGAGAGGCAGGTTTCGGGTGCGAACACAACCGT
CTTGAGGGAGAGGGACTGGGTGCGAGTGTGTACCTGACCCTCTGCGCCGT
CATGATGTGCTGTTGAAAATGACATGCTCTACGTCGGGTGTAGGGTGTAT
GGTCCGGCCAGAGGGTGATTTTAGCTTGCAGTCAGGCCACGACGGGCTGC
TGCAGCAGCAAGAGGAACCAACATGCTGCTGTAGGATACCTTGTCTCCGC
CCATCATTTGAGCGGCAACCACAGGATGCAACCCGACACCAGTGTACCAG
TTTGTGCGTAGCCTTTCGAGCCTCAGTTGTATGGCAACCGAGGCCCGCCC
ATTTCCTGGAGCATTGCCGTAAATGACACAAGATACCACACCCCCTTGAC
CGATTTCAAAGCTCGATTACTCCACGATAAAGAGGATGCACGAACAGAAC
GATGCATTGTCGGCAACCTCTCGATGAGACGGCTTCAACGCCGCCATGGT
TGTCACTGTGACTCCTTTTGCTGTTGAGGAATGGGCCTTTGAAAATCGGT
CAAGGGGGTGTGGTATCTTATGTCATTGTGGTACTCTTATTGAGAGGCAT
GTAGAGCAATGTTGGTAGTCTACAGCACGTCATCCAGCAGTAGGTATGTT
TCGGATAGATCATTGCACATGTTTGATTTGCTGCTACTGCTGACCATTAA
GTGCTACTGCTGTTCGACTGCTGCTCGACTTGCCTACCCCATGTTACTGC
GACGCAGGCGCGGTCCTCTTCACCGACGGCGAAAAATTGTGGAAGCGGTT
CGACAAAATCCTGCGCGAACAAGAAATACTACAACCCCGTGTGGGACAGT
TGTGTCTGTCTGTGATATTGTTTGTGTACGTGCTTGGAGCGTCAGTACAG
CTGCCGAGCTGCAATGTTTTTTGTTGCGTTCCGTGTAGGGTATTTTCCTC
TTCTCTTGTGGCGTGCACTGCTGTGAACGAGCAGTCGACTGCAACCACGC
CCTCCCGAGAAAAACATGGTTGGCGTCGGCGGCGTAACGCAGTGGTGAGT
AGTGCACGTACCTTCCGCCACAGAAGCACCGACGAACAACTCCCGTACGC
AATAAATACTAAATGAAGAAACGAGGCCGAACACGAAGGAACACGGAGGA
TATTGAACGGAGGTATTTGTTCTCAATCAAGAATAGTAGTCGGTTTTACG
AGAGTAAAAATCAGTGGTGTTTCGTAGGTTTCTGCATAAAACGCCCACAT
GCGCCCGTGTCTGGTGTGTTGTCGTGAGCATCGAACGCGGTGCCTAGCGG
TTTGATGTCCTTGTTTTTTGTCCGCACACCACTGGAATTGCCGCACTACA
TTTAAATTTCGAAATGTCACGTGCTCCGATCACCATACATGTACTATGCT
GACAACAGCAGTGTTGAACAAATGCTCAATCGCGTTAACGGCTGCTTTTG
GCGGCAACTCGCTGGCGTTTCCGCCCTCCCCCTTCAAAAAAGTAACATAA
CACCACGGCTGGGAACAGCTTTGAGATAGGTGGCCCCAGGGCGTACAACA
TGTTGCGAAGAAATTAAAGTAGGCCGCCCATCCCCCACCCCGATCATATA
AACTACGCATGCCAGTTGTCGCGGTGAGACACACAATGAACAACGATACA
CTCATGTCAGATTTATTGTTGCACTCTCCGCACCAAGTCAAAACTGTAGT
CACAAACCCTTGTGCGTTTCGCAGTGTGTCGTTTTGCCCTCGGTACGGTG
ACCCTCTCCCTGGTCGGCCTACTCTAAAACGATGACGGAACTCATGTGTA
TGTGGCACACCGGTGCTGTGTCACTTTGGCCGATTGGCATGACTCCCGGA
ACAATATTCTAAACCTCAGCGAAATATACAGTGGTGTGTATTCTTGACAT
AGTTTCCGCGCCACGGCCCTTCGAAATAAGTCGGATAGAAGAAAACCGAT
CGAAAATAGTAAGACCAGTGGCGACATGGGTGTGAACTGCTGCCCGTCAA
CATTCGAAATATGTGTCACCTTTGCGCGTACACACGAGCGAGAGTGCGTT
ACGATCGCTGCCAATCTCACCCGTTCTTCCTACCTCTCTCTACCTTGTTC
CCGTGCACCCCTGGCCCAGTTTCGTCGAAGGACAACCTGGGGACCAACTA
CCGTCGGGCAGCCAAGACGAAGACGCCATCGAGTACCTTCTGGACGGAGT
CTACCACATGGAATCCGGAACGGGGAACGCAGAGGACCCGATCGAGTTGG
AAGAGAGGGGTGGCGGTGAGGGAGAGGGTTCGGAAGATGACTCTGGGGAA
TCGTCACCGACGGAGAGCGAGGACGGCGGGAGTGGAAAGCAGAAAGGAAC
GGAGGAAGCAGTGGAGCCACAGGAAAGCAGCGGTGATGACTCACCGGCGG
GGGAGGGGGGGATGAAGAAGGAGCCAGAAGACGATACGCCGGGCAACGGG
GATGATGCCCCCTCCGAAGAAATCACACGAGAAGAGGGCGGGTTTCCGCA
GAGGCCCAACAAGTGGATGCACCAGTATCTCCTGACATTCTGTTTGATCG
GAAGGCCATGCAGCAGCGAGGACCCTGACCTCCGAACCGCACGCAAAACA
TCCGGACCCAAGGGTCGCGGCGCGTCCGGGGCCAAGGGTCGCGGCGGGAA
GCAGAAGGCGAAGAAAGGGTCACCCGGCACCAGCGACGAAAGCGGGTCGG
AGGCGAGCGGTGCGTACACCGAGGTTGATCTGTCGTCCAACGCGATCCGG
ATGTTCACAGGGGCCGGCGAAATTCAAAGCCGAGCACAGGTGAAGAAGGA
GACTGCTGCGGTAGCGGCCGCCAACGCGCAACTGCAGGCCCGCCGCGTCC
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Coding sequence (CDS) from alignment at Scaffold_385:313246..317195-

>EsuBft2647_4a-0001 ID=EsuBft2647_4a-0001|Name=EsuBft2647_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1407bp|location=Sequence derived from alignment at Scaffold_385:313246..317195- (Ectocarpus subulatus male Bft15b)
ATGCTCAACATCGACGACGTAGACGACCCCATCGTGATCGAAGACTTCCA
CGCCATTCTCGTCAAAGTGTGGAACAGGAGGGGGATATCCCTTCTGTCGC
ATGCGGGCACGGTGCTCCAAAAAATCGTCGGAAAACCTCTCAGCGACTAC
TACTGCGAGAAACACGACATCTTGCCGGAAGAGCAGTGCGCCTTCCGACC
TGGCAGGTCAACCGTCGACACGATGTTCGTCGTTCAACGACTGCAGGAGC
TGTCAAGGAGACGGAATATCCCTGCTTCGTCGACCTCCAGAAGGCCTATG
ACTCAGTCGACCGGGCACTACTATGGCAGGTGCTGGCCTGAGCGGGGATC
CAAGGAAATGATCGCGGACATCCGCCACTTCCACATAAACTATATATGTA
AGGCCATTTGTTACGATGCCTTTCTTGAGGCTGTCTTTTTTTCCCGAAAG
AGAAGACCCAAAAATTACAACAAGAAAAAGATGGCCCCTGTGCTGCTACG
TCTTTTTCTGAAGGTGGGGTTTCTTGATGATTTTCACCGGCGTTCGGCGT
GCGGGAGCGAACTAATTTTTGAATTTCCGCCATCACCCACGCCACAGACC
GCGCACAGCACAAAACACAACGCCCTTCTGCACCCCTTCCACTGCACACA
GCCACATCCCGTAAAGCAGACCATTGATGCTATGAAACTAGATGGCGTAC
AGTCTCTCCCGCTGAAGTTCAACTCGTACGCCGAGGCAGTGATTTCGATG
CTGCGGGACAGGAGCTCCGGCCTGACGGACGCCAAGTTGCTGAAGCACCT
CCAGAACGGGTGCATCGTGTACGCGTGCTTGGCGGTCAAGCGCAACGCCG
GGATTGTCTCCACACAGGCCAGGCACGCGGCAGCGGCGCAGGGGTACAAG
GACATCGCTGTCCCTGGCTTCATCAAGCGGCTCCAGGAAAACTTGGACAA
GGAGGATTTCTTCTTGCAGCCGTGGCTCACGTGCGAGGTCATGGGGAAGT
CGTCTATGAAGGGAGGCGCGGTCCTCTTCACCGACGGCGAAAAATTGTGG
AAGCGGTTCGACAAAATCCTGCGCGAACAAGAAATACTACAACCCCGTGT
GGGACAGTTGTTTTCGTCGAAGGACAACCTGGGGACCAACTACCGTCGGG
CAGCCAAGACGAAGACGCCATCGAGTACCTTCTGGACGGAGTCTACCACA
TGGAATCCGGAACGGGGAACGCAGAGGACCCGATCGAGTTGGAAGAGAGG
GGTGGCGGTGAGGGAGAGGGTTCGGAAGATGACTCTGGGGAATCGTCACC
GACGGAGAGCGAGGACGGCGGGAGTGGAAAGCAGAAAGGAACGGAGGAAG
CAGTGGAGCCACAGGAAAGCAGCGGTGATGACTCACCGGCGGGGGAGGGG
GGGATGA
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