EsuBft2647_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2647_3a-0001
Unique NameEsuBft2647_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_385contigScaffold_385:311557..313243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2647_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length79
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2647_3aEsuBft2647_3aEctocarpus subulatus male Bft15bgeneScaffold_385 311557..313243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2647_3a-0001EsuBft2647_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_385 311998..313013 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2647_3a-0001-exonEsuBft2647_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_385 311557..311641 +
EsuBft2647_3a-0001-exonagat-exon-36690Ectocarpus subulatus male Bft15bexonScaffold_385 311937..312091 +
EsuBft2647_3a-0001-exonagat-exon-36689Ectocarpus subulatus male Bft15bexonScaffold_385 312593..312637 +
EsuBft2647_3a-0001-exonagat-exon-36691Ectocarpus subulatus male Bft15bexonScaffold_385 312736..313243 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2647_3a-0001-exonagat-five_prime_utr-6844Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_385 311557..311641 +
EsuBft2647_3a-0001-exonagat-five_prime_utr-6845Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_385 311937..311997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2647_3a-0001-cdsEsuBft2647_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_385 311998..312091 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2647_3a-0001-exonagat-three_prime_utr-10668Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_385 313014..313243 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2647_3a-0001 ID=EsuBft2647_3a-0001|Name=EsuBft2647_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=793bp|location=Sequence derived from alignment at Scaffold_385:311557..313243+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTCGGACGGTGCAACGACGTCTTTACAAAAAACGTGGGAACAAAGGGGA
GGGGGGGGGCATGACAAGCGTTACTGCCGTGGCCCCCCGTACGCCAAAAA
AAAAAACACAACCGCTACAAGAAAAAAAAACACCCAAAGAGAAGGCATGT
CGGACTGTGCAAACAACGTCTTTACAATAAAACTTGGGGCACAAGGGGAC
GGAGGGGGAGAGGGCATGACAAGCATGGCTGCCATAGCCCCCCGTACACA
AAAAAACCACACACACACACTCTCTAAATTCTCACACCGTGTTGCGCCCA
AGACGACGGGGGCAACTACCGCAGCAGAGGAAGTAGGCGTTGCCGTAGCG
GGCGATGACGACACGGGCGTAGGGCTGGAAGCTACCCCCGCCGCGGACAC
GGGTGTAGCCGCCGCGGGCGAGGACGACATGGGGGCTGGGCTGCCTCCTA
CCCCGGCCGTAGATGCGAGTGTTGCCGCAGCAGGCGGAGTAGAAGCGGAC
GTACGGAGTGCAGCTCCTGCGCCGGGTGGTGTCGCCGCCGAGATGGGTTT
GGCCAAGAAGTAGCTGTCGGGCTGCTCGTACGCGGCCATTATTGCGGCTC
GCAGTTCCATCTTTTTTTGTTCGGATGGTGCATACTCCAACATCCCCTTG
AGGTCTGCAATTTTCGCCTTTTTGGCCTCTCGAGCGTCCGCCAAGCGAGC
CCTGCCTGCGGCCTCTTCATCCAAAGACTGCCTCGACACAACAGCCGCCG
ACAGAGCTTCCACGGCCGTCACCAGCTTGCCTGTGTTGGTCTC
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protein sequence of EsuBft2647_3a-0001

>EsuBft2647_3 ID=EsuBft2647_3|Name=EsuBft2647_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=138bp
MSDCANNVFTIKLGAQGDGGGEGMTSMAAIAPRTQKNHTHTLSKFSHRVA
PKTTGATTAAEEVGVAVAGDDDTGVGLEATPAADTGVAAAGEDDMGAGLP
PTPAVDASVAAAGGVEADVRSAAPAPGGVAAEMGLAKK
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mRNA from alignment at Scaffold_385:311557..313243+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2647_3a-0001 ID=EsuBft2647_3a-0001|Name=EsuBft2647_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1687bp|location=Sequence derived from alignment at Scaffold_385:311557..313243+ (Ectocarpus subulatus male Bft15b)
TGTCGGACGGTGCAACGACGTCTTTACAAAAAACGTGGGAACAAAGGGGA
GGGGGGGGGCATGACAAGCGTTACTGCCGTGGCCCGTACGCAAAAAAAAA
ACACAACCGCTACAAGCAAAAAACACCCAAAGAGAAGGCATGTCGGACGG
TCCAAACAACTTCTTTACAAAAAAACTCGGGCACAAGGGGACAGAAGGGG
AGAGGGCATGACAAGCATGGCTGCCGCAGCTCATACGCAAAAGTAAACAC
AACCGTTTACAAGAAAAAACTCAACACCCAAAGAGAAGACATTGTCGGAT
GGTGCAACAAAGTCTTTACAAGAAAACGTGGGGACGAAGGGGGGGGGGGG
GGGGGGGCATGACAAGCGTTACTGCCGTAGCCCGTACGCCAAAAAAAAAA
ACACAACCGCTACAAGAAAAAAAAACACCCAAAGAGAAGGCATGTCGGAC
TGTGCAAACAACGTCTTTACAATAAAACTTGGGGCACAAGGGGACGGAGG
GGGAGAGGGCATGACAAGCATGGCTGCCATAGCCCGTACACACACAAAAA
AAAAGACGCTACAAGACAAATGACAGTACCCAAAGAGAAGACATGTCGGA
CGGTGCAACGACGTCTTTACAAAAAACGTGGAAACAAAGAGGAGGAGGGG
GGCATGACAAGCGTTACTGCCGTAGCCCGTACGCCAAAAAAAAAACACAA
CCGCTACGAGAAAAAAACAAAAAACCACGGGTGTGTTCTGTAGGGTACTC
ACAGACCTGTACCGGGGGTAAGTACCCTCTGTAATTACCCTACGGAATAG
TTCTGTGGGTTCTGTAGCACCCTCGTACAATACAGAATAGTTCTGAGGTT
CTGTAGCACCCTCGCCCAATACAAAATAGTTCTGTGAGTTCTGTGACACC
CCCGGTACCCTACAGATTAGTTCTGTGCAAAAAACAAAGAAAAGGCATAT
CGGACGGTGCAAACAACGTCTTTACAATAAAACTTGGGCACAAGGGGACG
GAGGGGGAGAGGGCATGACAAGCATGGCTGCCATAGCCCGTACACAAAAA
AACCACACACACACACTCTCTAAATTCTCACGTGTCCAGCCGCGCTAGCA
ACGGGACGTGCCGCTCTCGCACCAACACCACCCCTCTTCCGCGCCCCGGT
GAATCCCGGGAGGGCGGACCGTGTTGCAGACCGTGTTGCGCCCAAGACGA
CGGGGGCAACTACCGCAGCAGAGGAAGTAGGCGTTGCCGTAGCGGGCGAT
GACGACACGGGCGTAGGGCTGGAAGCTACCCCCGCCGCGGACACGGGTGT
AGCCGCCGCGGGCGAGGACGACATGGGGGCTGGGCTGCCTCCTACCCCGG
CCGTAGATGCGAGTGTTGCCGCAGCAGGCGGAGTAGAAGCGGACGTACGG
AGTGCAGCTCCTGCGCCGGGTGGTGTCGCCGCCGAGATGGGTTTGGCCAA
GAAGTAGCTGTCGGGCTGCTCGTACGCGGCCATTATTGCGGCTCGCAGTT
CCATCTTTTTTTGTTCGGATGGTGCATACTCCAACATCCCCTTGAGGTCT
GCAATTTTCGCCTTTTTGGCCTCTCGAGCGTCCGCCAAGCGAGCCCTGCC
TGCGGCCTCTTCATCCAAAGACTGCCTCGACACAACAGCCGCCGACAGAG
CTTCCACGGCCGTCACCAGCTTGCCTGTGTTGGTCTC
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Coding sequence (CDS) from alignment at Scaffold_385:311557..313243+

>EsuBft2647_3a-0001 ID=EsuBft2647_3a-0001|Name=EsuBft2647_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=417bp|location=Sequence derived from alignment at Scaffold_385:311557..313243+ (Ectocarpus subulatus male Bft15b)
ATGTCGGACTGTGCAAACAACGTCTTTACAATAAAACTTGGGGCACAAGG
GGACGGAGGGGGAGAGGGCATGACAAGCATGGCTGCCATAGCCCCCCGTA
CACAAAAAAACCACACACACACACTCTCTAAATTCTCACACCGTGTTGCG
CCCAAGACGACGGGGGCAACTACCGCAGCAGAGGAAGTAGGCGTTGCCGT
AGCGGGCGATGACGACACGGGCGTAGGGCTGGAAGCTACCCCCGCCGCGG
ACACGGGTGTAGCCGCCGCGGGCGAGGACGACATGGGGGCTGGGCTGCCT
CCTACCCCGGCCGTAGATGCGAGTGTTGCCGCAGCAGGCGGAGTAGAAGC
GGACGTACGGAGTGCAGCTCCTGCGCCGGGTGGTGTCGCCGCCGAGATGG
GTTTGGCCAAGAAGTAG
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