EsuBft2647_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2647_2a-0001
Unique Name	EsuBft2647_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_385	contig	Scaffold_385:301374..306828 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4081.Solyc11g062200.1.1
ProteomeId	EsuBft2647_2
Protein domains	Coil
Protein domains	IPR013103
Protein domains	IPR025724
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	2
Max annot lvl	35493\|Streptophyta
Length	4197
Evalue	7.16e-29
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,44UC5@71274\|asterids
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Mitochondrial protein
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2647_2a	EsuBft2647_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_385 301374..306828 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2647_2a-0001-exon	agat-exon-36688	Ectocarpus subulatus male Bft15b	exon	Scaffold_385 301374..302074 -
EsuBft2647_2a-0001-exon	EsuBft2647_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_385 303333..306828 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2647_2a-0001-exon	agat-three_prime_utr-10667	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_385 301374..301423 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2647_2a-0001-cds	EsuBft2647_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_385 301424..302074 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2647_2a-0001-exon	agat-five_prime_utr-6843	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_385 306675..306828 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2647_2a-0001	EsuBft2647_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_385 301424..306674 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_385:301374..306828-
coding sequence from alignment at Scaffold_385:301374..306828-

spliced messenger RNA

>EsuBft2647_2a-0001 ID=EsuBft2647_2a-0001|Name=EsuBft2647_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4197bp|location=Sequence derived from alignment at Scaffold_385:301374..306828- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCGGAAACAAGAAAACCACAACCGGAGTCCTCTATATCAGTAGCAGGAAC
GGGGTGGGGAAGTCTCGGGTACAGGCAGTAGTACCACGAGCAAACTTACT
CCTACAGCAGGAAGTACTTTTATCAAGACGAAGAAAATAAAGCTGGAACG
AGCAATGGATACTGCAACGAGCAACACAGGAGGTGGAAGCGCGTTCGCCA
GCGATAGTTCTACGAACCTGGCAACCGTGATCAAAGGCCTCAAGAAATTC
GACGGAAAGGACCCAGCTGAGTTCAAGACATGGATGAAGAAATTCTGCGT
GGTGTTAGGTGTGACCAGGAAGGACATCCTGCCACTGCTGAAGAAACAAA
GGAAGCCAGATCCCGCAGACACAGCGGCCTTCGACTCCTACACAAGGGCA
AACGAAGATCTCTACGCCATTCTTTTCCTCCTAGTGGAACTTCCAGCCGC
CTTGTCGATACAGAAGCACGAAGACGACACTGGCATCAGCGGCGACGGAC
AAGCTGCCTTCGAGGAGCTCTGCAACAACTATGACAGGGTAACGGACGAG
GTCATCAGGGCCAAGATGGAGGAGCTGGAGAACAACCCCATGAACCCTGG
TGAAAATCCCGACGACTACTTCAACCAGAAGCACCTACTTCGCACCCAGC
TGGATAAGATGGGAGAACCCATCTCCGACCGCCGCTTCAAGGACATCTGC
GTACAAGGCTTCTCCGACGAATACAACGACGTCAAAGTGATGGTGTTCAG
AGACCCAACCTTCAACGTCCTGGACATGCAATCCACCATGCGCAACATCT
TCTTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CAAGGACAATCGAGGACAGCAATTGCGCGTGCGGATTCAGGGACTCATCG
TTCCGGGACTTGGTCGCAACATTTTTTCGCCCACCTCCCTCCTGAAAAAG
GGATTGCGCTGCGTCGTCGAAGAGAGCACTCCGCACCTCACTATCCGAGA
CAAGGTGATTCCACTCACACAAGATCCGCGAGACCAAGGCATGTGCACCC
TCGACATCACGTTCGAGCAGAACGTCCAGCCATCTGGCACGAAATCCCTC
GTGCCCCACCAGAAGCAGTCACAGACCCACACGGCGAACGCCGTCTGCTT
TACGCTAGTGAGCGCGGACACCTGGCACAGGAGGCTTGGACATCTCAATG
CTCGGAGCCTGGACATCCTTCGGAAGGACACGGGTATCGGGGTGGACTAT
CGCGACAGTCTCTCCCCTTGCGGGGTCTGCCAGATCGCGAAACACAAGCA
GTCCCCCTACCCGAAGCAATCGACTCGCGAACTATCACGGCCTGGACAGC
TTGTGGTCATCGACAACATGGGGCCTGTTAATCCACCTGCGAAATATAAA
GGAAGCTCCTTCCCGTACGCGTGCAAGATCACCTTCGACTACACGAAGAT
GAAAGAAGTTTACCTGCTTCGCAAGAAATCTGACACGACCGAGGCGCTCG
TGGACCAGAAGAAGAAGGAACTCACGGATCGATTCGAGATGACCGACATG
GGAGAGGTAAAGCGGATCCTCGGGATCGACGTGCAGCGGGACTACGAGCA
AGGAACCCTGGCCATTTCACAGGAGCACTACGTGAACACACTTCTGGAGC
GGTTCGGAATGCAAGAGGCCAACCCAGTGAGCACTCCTGGATACGGAGCG
GAAATCTCCACGAATCAACCTCAGGACCAAATCCTAGGACCCACGGACAA
GAAAATCTACCAGTCGATGACAGGAAGCATCCTCTACCTGGCCCAGTGCA
CGCGATTCGACCTCTCCTACGCTGCTCTACAACTTTCCAAGGCCTGCAGC
AACCCAGCGCAGGTGAACATGACAGCAGCCAAGCACGTTCTGCGATACCT
TCGGGGTAATCCGGTTCTTCCTATCGTCTACAAGAGAGGACAGTTTCGGC
TAGCGGCGTTTACGGATTCATCCTTCGGAGCAAACCCCGACAACGGAAGA
TCTACCACGGGATATCTCTTCTTTCTGGCTGGAGGACTCATCAGCTACGG
TGCGAAGACTCAAACTCTAACCGCGCAAAGCACGGTCGAAGCCGAGAAGC
ACTTAACTACTCAGTCAGAGAGGCGGTCTACATCTCAAATTTTATGACGG
AACTCAACTTCAAGACCTTCGGATCGGTTCCCATCAACAGCGACAGC

protein sequence of EsuBft2647_2a-0001

>EsuBft2647_2 ID=EsuBft2647_2|Name=EsuBft2647_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=1330bp
MDTATSNTGGGSAFASDSSTNLATVIKGLKKFDGKDPAEFKTWMKKFCVV
LGVTRKDILPLLKKQRKPDPADTAAFDSYTRANEDLYAILFLLVELPAAL
SIQKHEDDTGISGDGQAAFEELCNNYDRVTDEVIRAKMEELENNPMNPGE
NPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYNDVKVMVFRD
PTFNVLDMQSTMRNIFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVK
DNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTIRDK
VIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFT
LVSADTWHRRLGHLNARSLDILRKDTGIGVDYRDSLSPCGVCQIAKHKQS
PYPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGSSFPYACKITFDYTKMK
EVYLLRKKSDTTEALVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQG
TLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKK
IYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLR
GNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGA
KTQTLTAQSTVEAEKHLTTQSERRSTSQIL

mRNA from alignment at Scaffold_385:301374..306828-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2647_2a-0001 ID=EsuBft2647_2a-0001|Name=EsuBft2647_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5455bp|location=Sequence derived from alignment at Scaffold_385:301374..306828- (Ectocarpus subulatus male Bft15b)
TCGGAAACAAGAAAACCACAACCGGAGTCCTCTATATCAGTAGCAGGAAC
GGGGTGGGGAAGTCTCGGGTACAGGCAGTAGTACCACGAGCAAACTTACT
CCTACAGCAGGAAGTACTTTTATCAAGACGAAGAAAATAAAGCTGGAACG
AGCAATGGATACTGCAACGAGCAACACAGGAGGTGGAAGCGCGTTCGCCA
GCGATAGTTCTACGAACCTGGCAACCGTGATCAAAGGCCTCAAGAAATTC
GACGGAAAGGACCCAGCTGAGTTCAAGACATGGATGAAGAAATTCTGCGT
GGTGTTAGGTGTGACCAGGAAGGACATCCTGCCACTGCTGAAGAAACAAA
GGAAGCCAGATCCCGCAGACACAGCGGCCTTCGACTCCTACACAAGGGCA
AACGAAGATCTCTACGCCATTCTTTTCCTCCTAGTGGAACTTCCAGCCGC
CTTGTCGATACAGAAGCACGAAGACGACACTGGCATCAGCGGCGACGGAC
AAGCTGCCTTCGAGGAGCTCTGCAACAACTATGACAGGGTAACGGACGAG
GTCATCAGGGCCAAGATGGAGGAGCTGGAGAACAACCCCATGAACCCTGG
TGAAAATCCCGACGACTACTTCAACCAGAAGCACCTACTTCGCACCCAGC
TGGATAAGATGGGAGAACCCATCTCCGACCGCCGCTTCAAGGACATCTGC
GTACAAGGCTTCTCCGACGAATACAACGACGTCAAAGTGATGGTGTTCAG
AGACCCAACCTTCAACGTCCTGGACATGCAATCCACCATGCGCAACATCT
TCTTGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CAAGGACAATCGAGGACAGCAATTGCGCGTGCGGATTCAGGGACTCATCG
TTCCGGGACTTGGTCGCAACATTTTTTCGCCCACCTCCCTCCTGAAAAAG
GGATTGCGCTGCGTCGTCGAAGAGAGCACTCCGCACCTCACTATCCGAGA
CAAGGTGATTCCACTCACACAAGATCCGCGAGACCAAGGCATGTGCACCC
TCGACATCACGTTCGAGCAGAACGTCCAGCCATCTGGCACGAAATCCCTC
GTGCCCCACCAGAAGCAGTCACAGACCCACACGGCGAACGCCGTCTGCTT
TACGCTAGTGAGCGCGGACACCTGGCACAGGAGGCTTGGACATCTCAATG
CTCGGAGCCTGGACATCCTTCGGAAGGACACGGGTATCGGGGTGGACTAT
CGCGACAGTCTCTCCCCTTGCGGGGTCTGCCAGATCGCGAAACACAAGCA
GTCCCCCTACCCGAAGCAATCGACTCGCGAACTATCACGGCCTGGACAGC
TTGTGGTCATCGACAACATGGGGCCTGTTAATCCACCTGCGAAATATAAA
GGAAGCTCCTTCCCGTACGCGTGCAAGATCACCTTCGACTACACGAAGAT
GAAAGAAGTTTACCTGCTTCGCAAGAAATCTGACACGACCGAGGCGGTGC
ACACGTACAACATGTGCGTCGCAGCGGCAGGAGGCTACCGGATCGAGACC
ATCCGCTGCGACAAGGGAGGCGAGAACACCGGATCCGAATTTCGGGACTA
CTGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCACAGGAGGAGACCA
GCAGCTCGTGGACCAGAAGAAGAAGGAACTCACGGATCGATTCGAGATGA
CCGACATGGGAGAGGTAAAGCGGATCCTCGGGATCGACGTGCAGCGGGAC
TACGAGCAAGGAACCCTGGCCATTTCACAGGAGCACTACGTGAACACACT
TCTGGAGCGGTTCGGAATGCAAGAGGCCAACCCAGTGAGCACTCCTGGAT
ACGGAGCGGAAATCTCCACGAATCAACCTCAGGACCAAATCCTAGGACCC
ACGGACAAGAAAATCTACCAGTCGATGACAGGAAGCATCCTCTACCTGGC
CCAGTGCACGCGATTCGACCTCTCCTACGCTGCTCTACAACTTTCCAAGG
CCTGCAGCAACCCAGCGCAGGTGAACATGACAGCAGCCAAGCACGTTCTG
CGATACCTTCGGGGTAATCCGGTTCTTCCTATCGTCTACAAGAGAGGACA
GTTTCGGCTAGCGGCGTTTACGGATTCATCCTTCGGAGCAAACCCCGACA
ACGGAAGATCTACCACGGGATATCTCTTCTTTCTGGCTGGAGGACTCATC
AGCTACGGTGCGAAGACTCAAACTCTAACCGCGCAAAGCACGGTCGAAGC
CGAGAAGCACTTAACTACTCAGTCAGAGAGGCGGTCTACATCTCAAATTT
TATGACGGAACTCAACTTCAAGACCTTCGGATCGGTTCCCATCAACAGCG
ACAGC

Coding sequence (CDS) from alignment at Scaffold_385:301374..306828-

>EsuBft2647_2a-0001 ID=EsuBft2647_2a-0001|Name=EsuBft2647_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=3993bp|location=Sequence derived from alignment at Scaffold_385:301374..306828- (Ectocarpus subulatus male Bft15b)
ATGGATACTGCAACGAGCAACACAGGAGGTGGAAGCGCGTTCGCCAGCGA
TAGTTCTACGAACCTGGCAACCGTGATCAAAGGCCTCAAGAAATTCGACG
GAAAGGACCCAGCTGAGTTCAAGACATGGATGAAGAAATTCTGCGTGGTG
TTAGGTGTGACCAGGAAGGACATCCTGCCACTGCTGAAGAAACAAAGGAA
GCCAGATCCCGCAGACACAGCGGCCTTCGACTCCTACACAAGGGCAAACG
AAGATCTCTACGCCATTCTTTTCCTCCTAGTGGAACTTCCAGCCGCCTTG
TCGATACAGAAGCACGAAGACGACACTGGCATCAGCGGCGACGGACAAGC
TGCCTTCGAGGAGCTCTGCAACAACTATGACAGGGTAACGGACGAGGTCA
TCAGGGCCAAGATGGAGGAGCTGGAGAACAACCCCATGAACCCTGGTGAA
AATCCCGACGACTACTTCAACCAGAAGCACCTACTTCGCACCCAGCTGGA
TAAGATGGGAGAACCCATCTCCGACCGCCGCTTCAAGGACATCTGCGTAC
AAGGCTTCTCCGACGAATACAACGACGTCAAAGTGATGGTGTTCAGAGAC
CCAACCTTCAACGTCCTGGACATGCAATCCACCATGCGCAACATCTTCTT
GGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GACAATCGAGGACAGCAATTGCGCGTGCGGATTCAGGGACTCATCGTTCC
GGGACTTGGTCGCAACATTTTTTCGCCCACCTCCCTCCTGAAAAAGGGAT
TGCGCTGCGTCGTCGAAGAGAGCACTCCGCACCTCACTATCCGAGACAAG
GTGATTCCACTCACACAAGATCCGCGAGACCAAGGCATGTGCACCCTCGA
CATCACGTTCGAGCAGAACGTCCAGCCATCTGGCACGAAATCCCTCGTGC
CCCACCAGAAGCAGTCACAGACCCACACGGCGAACGCCGTCTGCTTTACG
CTAGTGAGCGCGGACACCTGGCACAGGAGGCTTGGACATCTCAATGCTCG
GAGCCTGGACATCCTTCGGAAGGACACGGGTATCGGGGTGGACTATCGCG
ACAGTCTCTCCCCTTGCGGGGTCTGCCAGATCGCGAAACACAAGCAGTCC
CCCTACCCGAAGCAATCGACTCGCGAACTATCACGGCCTGGACAGCTTGT
GGTCATCGACAACATGGGGCCTGTTAATCCACCTGCGAAATATAAAGGAA
GCTCCTTCCCGTACGCGTGCAAGATCACCTTCGACTACACGAAGATGAAA
GAAGTTTACCTGCTTCGCAAGAAATCTGACACGACCGAGGCGCTCGTGGA
CCAGAAGAAGAAGGAACTCACGGATCGATTCGAGATGACCGACATGGGAG
AGGTAAAGCGGATCCTCGGGATCGACGTGCAGCGGGACTACGAGCAAGGA
ACCCTGGCCATTTCACAGGAGCACTACGTGAACACACTTCTGGAGCGGTT
CGGAATGCAAGAGGCCAACCCAGTGAGCACTCCTGGATACGGAGCGGAAA
TCTCCACGAATCAACCTCAGGACCAAATCCTAGGACCCACGGACAAGAAA
ATCTACCAGTCGATGACAGGAAGCATCCTCTACCTGGCCCAGTGCACGCG
ATTCGACCTCTCCTACGCTGCTCTACAACTTTCCAAGGCCTGCAGCAACC
CAGCGCAGGTGAACATGACAGCAGCCAAGCACGTTCTGCGATACCTTCGG
GGTAATCCGGTTCTTCCTATCGTCTACAAGAGAGGACAGTTTCGGCTAGC
GGCGTTTACGGATTCATCCTTCGGAGCAAACCCCGACAACGGAAGATCTA
CCACGGGATATCTCTTCTTTCTGGCTGGAGGACTCATCAGCTACGGTGCG
AAGACTCAAACTCTAACCGCGCAAAGCACGGTCGAAGCCGAGAAGCACTT
AACTACTCAGTCAGAGAGGCGGTCTACATCTCAAATTTTATGA