EsuBft262_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft262_6a-0001
Unique Name	EsuBft262_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_647	contig	Scaffold_647:508972..512515 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FUP2
ProteomeId	EsuBft262_6
Protein domains	SSF143875
Protein domains	IPR000781
Owner	apollo_admin@sb-roscoff.fr
Note	enhancer of rudimentary homolog os:mus musculus gn:erh pe:1 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	1525
Hectar predicted targeting category	other localisation
Evalue	2.92e-66
EggNOG OGs	KOG1766@1\|root,KOG1766@2759\|Eukaryota
Ec32 ortholog description	Enhancer of rudimentary
Ec32 ortholog	Ec-26_002200.1
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	CLEC2L
KEGG ko	ko:K17086
Description	positive regulation of Notch signaling pathway
COG category	P
BRITE	ko00000,ko04147

Cross References

External references for this mRNA


Database	Accession
GO	0010148
GO	0072528
GO	0050832
GO	2000027
GO	0048281
GO	0010103
GO	0030496
GO	0030155
GO	0051302
GO	0005622
GO	0003333
GO	0005975
GO	0009944
GO	0009965
GO	0006213
GO	0007049
GO	0005739
GO	0001558
GO	0009664
GO	0001649
GO	0044711

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft262_6a	EsuBft262_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_647 508972..512515 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft262_6a-0001	EsuBft262_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_647 509068..511392 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft262_6a-0001-exon	agat-exon-49267	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 508972..509070 +
EsuBft262_6a-0001-exon	EsuBft262_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 509973..510060 +
EsuBft262_6a-0001-exon	agat-exon-49266	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 510593..510713 +
EsuBft262_6a-0001-exon	agat-exon-49265	Ectocarpus subulatus male Bft15b	exon	Scaffold_647 511299..512515 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft262_6a-0001-exon	agat-five_prime_utr-6795	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_647 508972..509067 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft262_6a-0001-cds	EsuBft262_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_647 509068..509070 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft262_6a-0001-exon	agat-three_prime_utr-10607	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_647 511393..512515 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_647:508972..512515+
coding sequence from alignment at Scaffold_647:508972..512515+

spliced messenger RNA

>EsuBft262_6a-0001 ID=EsuBft262_6a-0001|Name=EsuBft262_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1525bp|location=Sequence derived from alignment at Scaffold_647:508972..512515+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCAGTGCAACAGCAGCCGACATAAGCTTCCGGTGTGTGGGAAACTGCCG
GACAAGCCTGAGCCGCGCTTAGTTTTCACAATATAAGACACAAATCATGG
GGTACCACACGATTCTCTTGGTCCAGCGAGACTCGGTCAACAGTAGGATG
TACTACGACCTCCCGTCCACAAGCCAAGCAATGGAACGCGTGGTAAAAAT
GTACGAGGCTCGGTTGAAGGAGGTCAACCCGCACCAGGTTCACATCACGT
ACGATATCACCGACCTATACGGCTTCATCGACGAACTCGGAGACTTGAGC
GCTCTCGTGGTAAACACGGACACGGGGTTGTACACGCCACACGGCAAGTC
GTGGATAAAGGAGTACCTCTTCAAGTACTTCCAGCAGCAGGCCGAATCCT
AAGGCACGTGGCACCATCCCGTCCGGAGCTTCACCAAGCTCTCGGGGAAC
GCCCCACTTGTTTTTGGATCTTGTAGACTTTATGGCGACTTGTAGACTTT
GGGCGAGGCAGGTGTTAGTGTGGGGTACCCCCGGGGTAGTATTGGCATTC
GCGTAGCCCCCCCCCCCTCCCTCCCCCCCATCCAAGGGTGCATCCTCGTT
ATCGTTTTTATTTTTTTGAAACTTTGATGTTGGATGAAAGTTACGACGTC
CCTCCCCCTACCGTGTGTTCGTATGGTGGCTACCGTATCACCGTGAGGCA
GGCAGGACACGGCGCGTGTCGTCGTGTTGAGCTTGGGTACCAGGTACTGT
AGTGTCTCTCAACGGAAGAAAGGTGGACATCGGCCCTGGCGTGCAGCGAG
GCTGAGTCGATCGTGTACGTACGGTGATAATGGTGTTAATGGTATTAGCC
GGGAGGTGCACACAGATAACGGAAGGATATTCTGCGTTCTTTTTGGACCA
GACTGGGCCAAACGCTGGCAGATCACGTCGACGAGATTTGTATGAGCCTC
GGCCCACGTTTCTTCCTCTTGGTCAAAGTCGGTGCCGCGTTGAATTCTGA
TTGGCCGAAGTAGGCAGCGTCCTTTTAGCGTGCGACTGAATGCTGCCCCG
AACTATGTTCATGAGCTTCGTTGGCGCACGAGTTCCAGGCCTTGGTAAAA
GATGGTCTTCAGTTGTCCGTTCCAATGCGGTTGGTTTACCCTTGAAGCTT
AATCGGATGGGGGGGACGAAGGCAGCTATAGGATAGATTGTTGACGGATT
GCTTCACGATTGAGGGACAGATGCTGTTGCAATTTGTTAATTACATCAGC
CTAGGCGGTTCAGGCCGTCCCAACAGCCAGAAATCGAACCAAATGTCGCC
GGAGTTTTCGGTGATGTTACAGTAGTACCGGTTGTCCGGGCGTTCACTCG
TGAACGAACCTGAACGGAAGTCAGCGGCAGCATGTGCTTTATGAAAACGT
TAGCGCGTATACGTCATTCCAACAAAACCCATACGTTGCAACTTCGAGAA
GCATGATGTTGAAGTCATATTTGCCAGTACCGTATTCTGAGCCTTGCCCG
TCCAATCCTCAACGTCGTGGCCGTC

protein sequence of EsuBft262_6a-0001

>EsuBft262_6 ID=EsuBft262_6|Name=EsuBft262_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=101bp
MGYHTILLVQRDSVNSRMYYDLPSTSQAMERVVKMYEARLKEVNPHQVHI
TYDITDLYGFIDELGDLSALVVNTDTGLYTPHGKSWIKEYLFKYFQQQAE
S

mRNA from alignment at Scaffold_647:508972..512515+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft262_6a-0001 ID=EsuBft262_6a-0001|Name=EsuBft262_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3544bp|location=Sequence derived from alignment at Scaffold_647:508972..512515+ (Ectocarpus subulatus male Bft15b)
CGCAGTGCAACAGCAGCCGACATAAGCTTCCGGTGTGTGGGAAACTGCCG
GACAAGCCTGAGCCGCGCTTAGTTTTCACAATATAAGACACAAATCATGG
TGAGTCGGCCCATCTTTGGTCGCCATTCTTACTAACTACTTCAATACTTG
CTGGACCCCACCCTCGATCCGTCGTGAGTTGGGCTGCTGCTGCTGTGATT
ACGGTCAAGGGGACGCAAGACTAGAGAGACGATTTTATTGTCATGTTTCT
GTGGGAGGCTCCATCATTTGGTTGCGTTTAAGATCAAGCCATGTCATCAC
CTTTGCTGTTATATTGTTGGCGTTCGCAATATCTTTCGCACCCAACGTCT
TACAAATACAGCAGTTGCACCGCAGATGCCCACACAGGTAGCTGAAGATG
CAGCCAGATCCATGACTGCCATACCTCAATCCTACGACTGTTGTAGATTT
TTGGCTCCCCGAGCCCGTTGTAGATGGCTAGTTGGCGGCTGAGATCAGGT
CGAGACTCCATCGGTTGTTGGCGTACCCATGCAATATTCAAGCCTGACAA
TGGCAACGTAATGGTGTCTTAACCTGGAGACCACGCGACAAGTATCGCCC
CTGTGCGTGTGGCGTTGCTCAACCGCTGGTGTGCCTCTCTAGCAGTTGAT
TGAAACCGCGATACATATATCGGGACGACTACGCGTTTTCTTCTTGGCCC
GGAGAAGACGGAACACGATTCCGCCAGCCACGGCCTTTCGCGCGATCGTG
CTGGCGTTCCCAACACCGCTCATCGGCAGTCTTTATCTACATTATAGGCC
AGTCGTCTACGTCTCCAGATGCCAGATGCAAAGAGCTGAGATTTGTCCCG
CCGCCAGCCCTGCTTCTCCCGCCCGCGAATTTTTCCGTCTGAATCTGAAT
CTTAACACCTGGACTGCTGACAAAGTCATGCCGACCCCCCCCCATTCTTC
ATTCTCCCGATCCCATCCGCGCGTGCCCCTAATTTACCCTCGTTTTCGCA
GGGGTACCACACGATTCTCTTGGTCCAGCGAGACTCGGTCAACAGTAGGA
TGTACTACGACCTCCCGTCCACAAGCCAAGCAATGGAACGTGAGTACCAG
CTACCACACACACACACATGTATGGGTGGAAGGACAACGAGGACTGTGTT
TCATGTTCTGGTCCACGCCTCGGCGCATGAATCTATTTATCTTTGGAAAT
GGTATGTTTTCGAAGTCGGGTCGACCGTTGGTCCCTGAGCAGTGCGTAGT
CGATACTGCTGTGATGGCCAACACGTTGAGACACAACCCCTGCAAGACTC
ACGCATCGCACAAGCAAGCAGTGCCTCGCAGCAGCTAAGAGACCATCCGC
CACCGTGTGCTTACCCACTTGCGCTGGGCTGCACGAGCGCATTGGGACCC
CTGACAACCGCCGAGAATCAAACCTGGTCAATATGGGTCGTGCTGTTCAG
GGGGGGAGGCCCGCTTGTTGCTCTTTCCGGATTGATTCATAGTTTGGGAT
TATTTCCTCATCGGAACAAAAACACTTCCATTTTATTTCGTAAGTTTAAG
GAGATGATTGCCATCTCCCTGCACATGCGAGGCAATCGGTCAAATATCGC
TTTTCGTTCTTTCGGTTGCAGGCGTGGTAAAAATGTACGAGGCTCGGTTG
AAGGAGGTCAACCCGCACCAGGTTCACATCACGTACGATATCACCGACCT
ATACGGCTTCATCGACGAACTCGGAGACTTGAGCGCTCTCGTGTGAGTTG
TGTGTTTCGAAGGTCGATGTATGTATGCATGCGTCCGTGGTGTTTGCTGT
CGTGACCCTTGCTTTCCGTTCAGCCCTGTGCGGAGTTTCTCTAGCACATC
CATACACCATACTGATCCTGCTAGGCGCGCTAGAGTTGTGTTGGTTGCGG
ATATGCTTGCTTAGGTCAAGCAGTTGGACACAGTTGTCGGCCACGTTTGC
AGGAAACCATCAGAGTCTGTCGACACGATTGGTGTGCCGCCGCTTTAGCG
GAGTCGCTAAACACCGCCAAGCTTCAAATGATCGTGTCCTGACAGCAGTT
CGCTGAGTTGCCCGAATGATTTGGTTCCGAGGAAATCTCGCCCAGAAGTG
CATGTACATTATGAAGCGGAATCCGGCCAATTTTGTACGTGGTCCTTGTT
GTTTGTGTCCCTGTGGAAGAGAAACTACGCATAATGATGCTACCAAGCCA
TGACGAATCACGTCAATCTCATCCGCTTTACCGAGTACTTGTTGCGATAC
CACCCCCCCTCCTCCACTCCTCCCCTGCGTGTTCTGGGGCGCCCATTGTG
TGTTGCACAAAAAAAAAAAAAATACAGGGTAAACACGGACACGGGGTTGT
ACACGCCACACGGCAAGTCGTGGATAAAGGAGTACCTCTTCAAGTACTTC
CAGCAGCAGGCCGAATCCTAAGGCACGTGGCACCATCCCGTCCGGAGCTT
CACCAAGCTCTCGGGGAACGCCCCACTTGTTTTTGGATCTTGTAGACTTT
ATGGCGACTTGTAGACTTTGGGCGAGGCAGGTGTTAGTGTGGGGTACCCC
CGGGGTAGTATTGGCATTCGCGTAGCCCCCCCCCCCTCCCTCCCCCCCAT
CCAAGGGTGCATCCTCGTTATCGTTTTTATTTTTTTGAAACTTTGATGTT
GGATGAAAGTTACGACGTCCCTCCCCCTACCGTGTGTTCGTATGGTGGCT
ACCGTATCACCGTGAGGCAGGCAGGACACGGCGCGTGTCGTCGTGTTGAG
CTTGGGTACCAGGTACTGTAGTGTCTCTCAACGGAAGAAAGGTGGACATC
GGCCCTGGCGTGCAGCGAGGCTGAGTCGATCGTGTACGTACGGTGATAAT
GGTGTTAATGGTATTAGCCGGGAGGTGCACACAGATAACGGAAGGATATT
CTGCGTTCTTTTTGGACCAGACTGGGCCAAACGCTGGCAGATCACGTCGA
CGAGATTTGTATGAGCCTCGGCCCACGTTTCTTCCTCTTGGTCAAAGTCG
GTGCCGCGTTGAATTCTGATTGGCCGAAGTAGGCAGCGTCCTTTTAGCGT
GCGACTGAATGCTGCCCCGAACTATGTTCATGAGCTTCGTTGGCGCACGA
GTTCCAGGCCTTGGTAAAAGATGGTCTTCAGTTGTCCGTTCCAATGCGGT
TGGTTTACCCTTGAAGCTTAATCGGATGGGGGGGACGAAGGCAGCTATAG
GATAGATTGTTGACGGATTGCTTCACGATTGAGGGACAGATGCTGTTGCA
ATTTGTTAATTACATCAGCCTAGGCGGTTCAGGCCGTCCCAACAGCCAGA
AATCGAACCAAATGTCGCCGGAGTTTTCGGTGATGTTACAGTAGTACCGG
TTGTCCGGGCGTTCACTCGTGAACGAACCTGAACGGAAGTCAGCGGCAGC
ATGTGCTTTATGAAAACGTTAGCGCGTATACGTCATTCCAACAAAACCCA
TACGTTGCAACTTCGAGAAGCATGATGTTGAAGTCATATTTGCCAGTACC
GTATTCTGAGCCTTGCCCGTCCAATCCTCAACGTCGTGGCCGTC

Coding sequence (CDS) from alignment at Scaffold_647:508972..512515+

>EsuBft262_6a-0001 ID=EsuBft262_6a-0001|Name=EsuBft262_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=306bp|location=Sequence derived from alignment at Scaffold_647:508972..512515+ (Ectocarpus subulatus male Bft15b)
ATGGGGTACCACACGATTCTCTTGGTCCAGCGAGACTCGGTCAACAGTAG
GATGTACTACGACCTCCCGTCCACAAGCCAAGCAATGGAACGCGTGGTAA
AAATGTACGAGGCTCGGTTGAAGGAGGTCAACCCGCACCAGGTTCACATC
ACGTACGATATCACCGACCTATACGGCTTCATCGACGAACTCGGAGACTT
GAGCGCTCTCGTGGTAAACACGGACACGGGGTTGTACACGCCACACGGCA
AGTCGTGGATAAAGGAGTACCTCTTCAAGTACTTCCAGCAGCAGGCCGAA
TCCTAA