EsuBft262_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft262_13a-0001
Unique NameEsuBft262_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:427559..431473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FUN6
ProteomeIdEsuBft262_13
Protein domainsPTHR11851
Protein domainsIPR011249
Protein domainsIPR011765
Protein domainsIPR001431
Protein domainsIPR011237
Ownerapollo_admin@sb-roscoff.fr
Noteprobable zinc protease os:haemophilus influenzae (strain atcc 51907 dsm 11121 kw20 rd) gn:pqql [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length587
Hectar predicted targeting categoryother localisation
Evalue1.41e-69
EggNOG OGsCOG1025@1|root,KOG0959@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Descriptionmetalloendopeptidase activity
COG categoryO
Cross References
External references for this mRNA
DatabaseAccession
GO0046872
GO0006508
GO0004222
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft262_13aEsuBft262_13aEctocarpus subulatus male Bft15bgeneScaffold_647 427559..431473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft262_13a-0001EsuBft262_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 427597..431473 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft262_13a-0001-exonagat-exon-49322Ectocarpus subulatus male Bft15bexonScaffold_647 427559..427774 +
EsuBft262_13a-0001-exonEsuBft262_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 429850..429932 +
EsuBft262_13a-0001-exonagat-exon-49321Ectocarpus subulatus male Bft15bexonScaffold_647 430791..430905 +
EsuBft262_13a-0001-exonagat-exon-49320Ectocarpus subulatus male Bft15bexonScaffold_647 431158..431301 +
EsuBft262_13a-0001-exonagat-exon-49319Ectocarpus subulatus male Bft15bexonScaffold_647 431445..431473 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft262_13a-0001-exonagat-five_prime_utr-6792Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_647 427559..427596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft262_13a-0001-cdsEsuBft262_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 427597..427774 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft262_13a-0001 ID=EsuBft262_13a-0001|Name=EsuBft262_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=587bp|location=Sequence derived from alignment at Scaffold_647:427559..431473+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CATTGAACAACACACGCAACGCGAACAGCGTGGGTTCCATGGAGGAGCTA
CAAAAGCACACCCACGATGGGAGTGAGGGTGCCGATGCCCGAGTGGGGGA
GGCAGGGCCTGCGGCGGCACAGGCTAAGACGGCCGCCAGCAAAGGCGCCA
GAGATCCCGAAGCAGTCTCGTTTGACCCAGGCGCTGATATCCCCTTCGAC
AAGGCAACGTTGAGAGGCGAGCTCGCCAACGGCATGGAGTACTACGTCCG
AGCCAACCGGCACCCGCGAGAGCGAGCTGAGCTCCGCATCGTCATCAAGG
TGGGGTCCGTGATGGAGACGGAGCAAGAGCGGGGGGTTGCGCACCTGATC
GAGCACCTGGCGTTTCGCGCCAGCAGGACTTGTCCGCAGGAGTTCGATCT
AGTCAAGGAGGCAATTGGAGTCGCACGGCATCAAGTTCGGAGCGCACCAG
AACGCCTACACGTCTTTCGAGGAGACGGTTTACGAGCTGCACGTACCAGC
CGACCAGCCGGTGCTCCTGGAGAGGAGCCTCCGGGTGCTTCGACAACTCG
CGCTCGAGGGGGAGGGCTCTTGGAGAGAATTCTCTAG
back to top

protein sequence of EsuBft262_13a-0001

>EsuBft262_13 ID=EsuBft262_13|Name=EsuBft262_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=182bp
MEELQKHTHDGSEGADARVGEAGPAAAQAKTAASKGARDPEAVSFDPGAD
IPFDKATLRGELANGMEYYVRANRHPRERAELRIVIKVGSVMETEQERGV
AHLIEHLAFRASRTCPQEFDLVKEAIGVARHQVRSAPERLHVFRGDGLRA
ARTSRPAGAPGEEPPGASTTRARGGGLLERIL
back to top

mRNA from alignment at Scaffold_647:427559..431473+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft262_13a-0001 ID=EsuBft262_13a-0001|Name=EsuBft262_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3915bp|location=Sequence derived from alignment at Scaffold_647:427559..431473+ (Ectocarpus subulatus male Bft15b)
CATTGAACAACACACGCAACGCGAACAGCGTGGGTTCCATGGAGGAGCTA
CAAAAGCACACCCACGATGGGAGTGAGGGTGCCGATGCCCGAGTGGGGGA
GGCAGGGCCTGCGGCGGCACAGGCTAAGACGGCCGCCAGCAAAGGCGCCA
GAGATCCCGAAGCAGTCTCGTTTGACCCAGGCGCTGATATCCCCTTCGAC
AAGGCAACGTTGAGAGGTGCGGAAGGAGGCGCATGAGCGGAGGAGGATAG
AGTGAGGCGTGCTGGGAGTGTTTCTTGTCAGAAGAATGTTTAAGGAAGGA
AAAACCAGTTCGTTCGTGTAAGCAATCCTTCTGTTGTCGGTGAATCTCGC
CTACCCATGCATAGTGTCGGTAGCTGTGCAGTCACAACATCATAGTAGCC
TGTGCTGTGCGCAACCTTGTTCAAATATGTCGCGGCGGGGTACATGCAAA
CTTAGCGACACACCTCGAATTAGTCTGCTTGCCGTGAGGGGTTAAGGCGT
ACCCAGGATGTATATTCATGATTTCTGAACAAGGGCAAGTTGGCACATTG
GCACCAACGTACATGCAGACATCCGGCAAACCGCTTCGAAACTTGGTGTG
ATGCTGCTTGTGAGAGCGGACCGCACACACACCGGTCGCCCCGGTGGTCT
AGTGGGTAGCCTCGCAGCCTGCTAAGGGCCAGGTCGTGGGTTCGAGTCCC
GGCAGAGTGAGAGTTTTCTCATAAATAAATCCTGGTCTAGGATGAAAGCA
ACGCGCTGCAAAGCTCGTTTGTTAGTAAACCATAATCGACTTCGTAAGTC
GCGAGGGAAGGGATTGCTGTACCCTTCTCGCGATAAAAATACCTCAGGCA
GGAACCGCAGGAGGGGGTCCAGCCCCCCCCTCCTATGTGACCCCGGTTGG
GTCGTCTAGCTGGTAGAAGTGGAGGATAGGGGCCAGAGGGGCAGACGACA
GAGTCCAATGATGGGAGAAAAATAAACAACAAACAAGCACACGCGCACGC
TTTGTTTTAATCCCGCTAGACATCACCCTGGCGTCTTTTCGTTGGCCAGC
CGATAGCGTGGTTGATACTTGAACTTCTTACCATTGAAAAACACGTCAAC
ACAAACATTACCGCAGTCGGCGCTGATTGAATAACCACAACCACAGAGAC
AGGCATGTTGTTGGGACTTCGCCACAAAGGAGACGTACCGCGGGAGGAAC
GCTTTTGTTGTCTATTTTGGGATCCGGAGGCTAGGCCGTTCTATCCAAGG
GGGCGAACGTACCTTGGTCGATGCACCGAAAAAAAATGCACGCGCAAGGA
CTTGAGTTACATACCTTTCTTAATGTACATTGGCCTGTGGCCACGAGAAT
CGACCGCGTCAAGCGTTAGATCAGCACGGACAGATGTTGGTACGGGTTAG
ATAGATCGGAACGATTTTCAATGTGAAGATAACAACGACGCCAACAAGGA
GCCCAAACAGGCTTGTACCACGCATCGAGAGGCCGGAGGCATGAAGGTAG
CGGAGGCACAGAGAGCGCGTGAGAACATGGCCCACGAGAGCAGTGGGCTA
GGCAATTCTACGTCTCTCTGCTGCTGAAGCTCAGGCTCGAACATGTCTTT
CTGTACGCACCGCCTCCGCCAAATCTGCGCGGGCCGCTGAGAAGGCTCCC
GCACCTGACCCCCCTATCTTGCCAGCCACGGCCCCTGTTAGCGTTCGGAT
TATTTCCTGCCGACTGTAGGGATTGTTAAGAGAGTTCCTGCACTCGACGA
TTTACGCAACTCCATCCACATGTCCCGAGAACAACATTCGAAGGATGTCG
AGTGGTAGAAGGGCTTGCAAAGATACTTGATCCTAACATCCACGGTGATT
ATCCATATTGATGCTTTGGGCCCAACAGCCTCGGTGCAAGTTACACACGA
CATCGAGAACGAACCGACTCCCCTCTTCCCTCCACCTCTGTCGTCACACA
GCACCACAAGTATGCCACAATATAGCATACCACGGGCCCAAATGACGGGC
CCAGGTAAACTTTCTAGCGCCCCCCATAGCGAACGTGCTGCAGTCTGTCG
TTTCCCATGACCCTGGCACGCACACGGTACCGTACTATTATTGTGCAGCT
GGCGGATGAAGATATGCACTGGGCAGAGAAAAACAACAAAAACAGATCTA
ACATTTTGCGAGGAGGAGCGTGGTGCTTGGAGAAGAACAGGTACTGCCCT
TCGGCGTTTGCGCGCATAATCACCCCGACTTGTGAACCGTTCCCTCCGTA
CTCGTGACGATGCCTGTACTCTCGGTTTCTGTCGGACGCAGGCGAGCTCG
CCAACGGCATGGAGTACTACGTCCGAGCCAACCGGCACCCGCGAGAGCGA
GCTGAGCTCCGCATCGTCATCAAGGTAATAAAATCGCGTTCAAAGGAGTT
TTGCGGATGAGGTCCAACCGAAGCCTCGATACTGGCAACTCGGCCGAGTC
CTCTACCAAGATTGTATAATGTTGACCATCTCCATGCACGATGCCAGGCT
AGGGCTATGATGATGGGGTTAGTGGTTTTGCTCTGGCTAGCTTTGGACGA
TAACGCTCGTAACACTTGGTCCAGCTCTCGTAACACCCGCACTCAAAAGG
CAGTGCAGAACAAGCAAAGTGGCCATGCATTGGTTTCCACGCACGCGGAG
AACAAAATGAGGAGCTCCTTCTTAAGCGCTAGTCGTACATGGTCGGCTTA
TTTTTTCGATTGTCATAACTCCCTCGCGCGCATCTCAAAGACTGGGGGGG
AGGGGGGGCGATTGCTTAGTCCATCTCCGGCGTCCACTGTGAAGGCGTGT
TTCTTGACGTGGCTCCTCCTCCTTCTTCTTCTTTGTTTATTCATCGGCGT
TTGCATCGCGCACTGGTATGCGTTCGTCTCGGGCGCTGATCGAAAAACCG
GTTGAATTCCGCCACGAAAATCAGATGGAACCATCCCGTCATGAACATCA
TCCTGTTCTGGAAATCAGATGGAATCGTCCCGTCATCAATATCAGATGGA
ATCACCCCGTCACTTAAATCAGATGGAATCATCCCGGCATGAAGATCAGG
TTGCCTCTGGTCACGAACACACAGATGGAGTTCGTTCTCGATAATCATGA
GGAATCCCCGTGATGAAGACAGCCGGGAAGGTGTTCCTTTGTTCGCCTCC
CCCCCCCCTCTCCTTCTCTCTTGCATCGCGCTGGTTGAAAGTAGAGGGCA
AAGTCTTGCGTGCCGATTGCAACGTTACACAGGTGGGGTCCGTGATGGAG
ACGGAGCAAGAGCGGGGGGTTGCGCACCTGATCGAGCACCTGGCGTTTCG
CGCCAGCAGGACTTGTCCGCAGGAGTTCGATCTAGTCAAGGAGGCAAGTT
TTTCGCGGGGAAGGCGGATTTCTACTGCCGTGTGCGGGCTTCCGCTCGTG
ATGTAACGGGCGATAGCTGACCGAACGCCCAAGCCGGTCCGGACAGAAAC
CAAACCGAGCGCGAAACATGGGAAAACAAGAACACCGATCCAACCCGACC
TTTTGTTGCTATGGATACCTATGTATATGCGTATCATGTCGAAATCCTCC
TCTTTACTTTGGTCTCCGCCTCCTCCTCCTCCTCCTCTGATACCCCCAGT
TGGAGTCGCACGGCATCAAGTTCGGAGCGCACCAGAACGCCTACACGTCT
TTCGAGGAGACGGTTTACGAGCTGCACGTACCAGCCGACCAGCCGGTGCT
CCTGGAGAGGAGCCTCCGGGTGCTTCGACAACTCGCGCTCGAGGTGCGAG
GCACGCGGGGAGGGCGGGAGGGGGTACAAGTCGAGGGTGGGGGAGGGTGG
GGGTACAAAGTCAGGGGTGTACTCTTACTCTCATGTTATGCATGCCTTAG
CGGTTAGATCATTGACCACGCGTCCTCGAGAGTCAGGGGGAGGGCTCTTG
GAGAGAATTCTCTAG
back to top

Coding sequence (CDS) from alignment at Scaffold_647:427559..431473+

>EsuBft262_13a-0001 ID=EsuBft262_13a-0001|Name=EsuBft262_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=549bp|location=Sequence derived from alignment at Scaffold_647:427559..431473+ (Ectocarpus subulatus male Bft15b)
ATGGAGGAGCTACAAAAGCACACCCACGATGGGAGTGAGGGTGCCGATGC
CCGAGTGGGGGAGGCAGGGCCTGCGGCGGCACAGGCTAAGACGGCCGCCA
GCAAAGGCGCCAGAGATCCCGAAGCAGTCTCGTTTGACCCAGGCGCTGAT
ATCCCCTTCGACAAGGCAACGTTGAGAGGCGAGCTCGCCAACGGCATGGA
GTACTACGTCCGAGCCAACCGGCACCCGCGAGAGCGAGCTGAGCTCCGCA
TCGTCATCAAGGTGGGGTCCGTGATGGAGACGGAGCAAGAGCGGGGGGTT
GCGCACCTGATCGAGCACCTGGCGTTTCGCGCCAGCAGGACTTGTCCGCA
GGAGTTCGATCTAGTCAAGGAGGCAATTGGAGTCGCACGGCATCAAGTTC
GGAGCGCACCAGAACGCCTACACGTCTTTCGAGGAGACGGTTTACGAGCT
GCACGTACCAGCCGACCAGCCGGTGCTCCTGGAGAGGAGCCTCCGGGTGC
TTCGACAACTCGCGCTCGAGGGGGAGGGCTCTTGGAGAGAATTCTCTAG
back to top