EsuBft2609_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2609_4a-0001
Unique NameEsuBft2609_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:56018..56367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog67593.Physo109618
ProteomeIdEsuBft2609_4
Protein domainsIPR013103
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl67593.Physo109618|-
Length350
Evalue1.03e-15
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHRW@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptiontransposition, RNA-mediated
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2609_4aEsuBft2609_4aEctocarpus subulatus male Bft15bgeneScaffold_373 56018..56367 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2609_4a-0001-exonEsuBft2609_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 56018..56367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2609_4a-0001-cdsEsuBft2609_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 56018..56323 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2609_4a-0001-exonagat-five_prime_utr-6742Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_373 56324..56367 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2609_4a-0001EsuBft2609_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 56018..56323 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2609_4a-0001 ID=EsuBft2609_4a-0001|Name=EsuBft2609_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=350bp|location=Sequence derived from alignment at Scaffold_373:56018..56367- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAAAAGAAGAAATATACCTCAGGTTCCCGGAAGGCTGTGGTAGCATGTCC
GGCAAGGTGGTAAAGGTTGAGCGTGCCCTGTACGGCCCAAAGCAGAGTGG
CCGTGAGTGGGAGTTTGAAGCTGCCGATGCCCTCATCGAGAACGGATACG
AGAAGTACAGGGTTGACCCGTGTGTCGTCCGGAAGGTGGTGGATGGAAAG
GTCGTAGGTCTCATCGTGATCTACGTTGATGACATCTTAGTGGCGGCAGA
CGAGGGAGAGCGAGAGGAGTTGTTCGCTTCTCTCAACAAGAAGTTTCCGG
TGAAAGATCTGGGGGAGTGTACCTGGTACNNNNNNNNNNNNAGGTCGTAG
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protein sequence of EsuBft2609_4a-0001

>EsuBft2609_4 ID=EsuBft2609_4|Name=EsuBft2609_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=101bp
MSGKVVKVERALYGPKQSGREWEFEAADALIENGYEKYRVDPCVVRKVVD
GKVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYXXXXR
S
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mRNA from alignment at Scaffold_373:56018..56367-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2609_4a-0001 ID=EsuBft2609_4a-0001|Name=EsuBft2609_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=350bp|location=Sequence derived from alignment at Scaffold_373:56018..56367- (Ectocarpus subulatus male Bft15b)
AAAAAGAAGAAATATACCTCAGGTTCCCGGAAGGCTGTGGTAGCATGTCC
GGCAAGGTGGTAAAGGTTGAGCGTGCCCTGTACGGCCCAAAGCAGAGTGG
CCGTGAGTGGGAGTTTGAAGCTGCCGATGCCCTCATCGAGAACGGATACG
AGAAGTACAGGGTTGACCCGTGTGTCGTCCGGAAGGTGGTGGATGGAAAG
GTCGTAGGTCTCATCGTGATCTACGTTGATGACATCTTAGTGGCGGCAGA
CGAGGGAGAGCGAGAGGAGTTGTTCGCTTCTCTCAACAAGAAGTTTCCGG
TGAAAGATCTGGGGGAGTGTACCTGGTACNNNNNNNNNNNNAGGTCGTAG
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Coding sequence (CDS) from alignment at Scaffold_373:56018..56367-

>EsuBft2609_4a-0001 ID=EsuBft2609_4a-0001|Name=EsuBft2609_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=306bp|location=Sequence derived from alignment at Scaffold_373:56018..56367- (Ectocarpus subulatus male Bft15b)
ATGTCCGGCAAGGTGGTAAAGGTTGAGCGTGCCCTGTACGGCCCAAAGCA
GAGTGGCCGTGAGTGGGAGTTTGAAGCTGCCGATGCCCTCATCGAGAACG
GATACGAGAAGTACAGGGTTGACCCGTGTGTCGTCCGGAAGGTGGTGGAT
GGAAAGGTCGTAGGTCTCATCGTGATCTACGTTGATGACATCTTAGTGGC
GGCAGACGAGGGAGAGCGAGAGGAGTTGTTCGCTTCTCTCAACAAGAAGT
TTCCGGTGAAAGATCTGGGGGAGTGTACCTGGTACNNNNNNNNNNNNAGG
TCGTAG
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