Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 67593.Physo130685 |
| ProteomeId | EsuBft2609_3 |
| Protein domains | IPR013103 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 4776|Peronosporales |
| Length | 872 |
| Hectar predicted targeting category | other localisation |
| Evalue | 4.17e-08 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | gag-polypeptide of LTR copia-type |
| COG category | L |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2609_3a-0001 ID=EsuBft2609_3a-0001|Name=EsuBft2609_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=872bp|location=Sequence derived from alignment at Scaffold_373:56369..57240- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTGTGGACGGCGGTAGCGGTTTCTGATTCCGGCGACTCCGAGAACCTCGA
GGAGTTGAAGTATGATCCAGCCGGCGACCGCTAGCCCCGAGGGCAAGAAG
GGAAGAAACTCTTCTGGGGCGCCTCGAACGCTGGCCCGCTGCGCCATGGG
CTTGAGAGTGGCCGCACGCGGAAGCAGACCCGGGAGATGCAAGGTGCCGG
GGAGATGCCGGGGCCCGGAGAAACACCGGACCCGGAAGAGGCATTGCTGG
CGACCATCCTGGAAACTGGCGGGACGGGGATTGTTAAGGACTACAGCTAC
AACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACACGCCGTATGGA
GGAGATGTACAGGCGCGAGATGCAGGAGGTGTTGGGCCCGGAACAGCAGG
CGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGCAACCACTCCCAGAC
CCACAGCTAAGTATAACCTCGCCAATCGGGCAGAAGCCGAGTGATGTGGA
AGCAGTACCGATGACGTACAAGTATGTGATGTGTTTCAAGTACAAGATTT
CCTGGGAGGCGGCCATGACGAAAGAGATAGATGGCCACGACAAGACTGGA
ACCTTGACCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGCCATAGGTTC
AAAGTGGTTGTTCTCTTGGAAGACGAATGAGAAGGGCCTAATGGTCGACT
TCAAGGCCCGTATGGTTGCGCGGGGTTCCTCTCAAATCCCGGCATCGACT
TCCACCACTCATCCTCAGCGTGCCTGTCTGCAGCGTCTATCAAGACGGTG
ATTGCCGTAGCCACTGAAAAGGGCAAGAAACTCGTTCACTGGGATGTGAA
GCAAGCGTACATCCACGCTAAG back to topprotein sequence of EsuBft2609_3a-0001 >EsuBft2609_3 ID=EsuBft2609_3|Name=EsuBft2609_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=204bp
MQGAGEMPGPGETPDPEEALLATILETGGTGIVKDYSYNSLVKEQWDEEQ
TRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQLSITSPIGQK
PSDVEAVPMTYKYVMCFKYKISWEAAMTKEIDGHDKTGTLTKVKELPEGR
KAIGSKWLFSWKTNEKGLMVDFKARMVARGSSQIPASTSTTHPQRACLQR
LSRR back to topmRNA from alignment at Scaffold_373:56369..57240- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2609_3a-0001 ID=EsuBft2609_3a-0001|Name=EsuBft2609_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=872bp|location=Sequence derived from alignment at Scaffold_373:56369..57240- (Ectocarpus subulatus male Bft15b)
GTGTGGACGGCGGTAGCGGTTTCTGATTCCGGCGACTCCGAGAACCTCGA
GGAGTTGAAGTATGATCCAGCCGGCGACCGCTAGCCCCGAGGGCAAGAAG
GGAAGAAACTCTTCTGGGGCGCCTCGAACGCTGGCCCGCTGCGCCATGGG
CTTGAGAGTGGCCGCACGCGGAAGCAGACCCGGGAGATGCAAGGTGCCGG
GGAGATGCCGGGGCCCGGAGAAACACCGGACCCGGAAGAGGCATTGCTGG
CGACCATCCTGGAAACTGGCGGGACGGGGATTGTTAAGGACTACAGCTAC
AACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACACGCCGTATGGA
GGAGATGTACAGGCGCGAGATGCAGGAGGTGTTGGGCCCGGAACAGCAGG
CGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGCAACCACTCCCAGAC
CCACAGCTAAGTATAACCTCGCCAATCGGGCAGAAGCCGAGTGATGTGGA
AGCAGTACCGATGACGTACAAGTATGTGATGTGTTTCAAGTACAAGATTT
CCTGGGAGGCGGCCATGACGAAAGAGATAGATGGCCACGACAAGACTGGA
ACCTTGACCAAGGTCAAGGAGCTGCCCGAGGGGCGGAAGGCCATAGGTTC
AAAGTGGTTGTTCTCTTGGAAGACGAATGAGAAGGGCCTAATGGTCGACT
TCAAGGCCCGTATGGTTGCGCGGGGTTCCTCTCAAATCCCGGCATCGACT
TCCACCACTCATCCTCAGCGTGCCTGTCTGCAGCGTCTATCAAGACGGTG
ATTGCCGTAGCCACTGAAAAGGGCAAGAAACTCGTTCACTGGGATGTGAA
GCAAGCGTACATCCACGCTAAG back to topCoding sequence (CDS) from alignment at Scaffold_373:56369..57240- >EsuBft2609_3a-0001 ID=EsuBft2609_3a-0001|Name=EsuBft2609_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=615bp|location=Sequence derived from alignment at Scaffold_373:56369..57240- (Ectocarpus subulatus male Bft15b)
ATGCAAGGTGCCGGGGAGATGCCGGGGCCCGGAGAAACACCGGACCCGGA
AGAGGCATTGCTGGCGACCATCCTGGAAACTGGCGGGACGGGGATTGTTA
AGGACTACAGCTACAACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAG
ACACGCCGTATGGAGGAGATGTACAGGCGCGAGATGCAGGAGGTGTTGGG
CCCGGAACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGC
AACCACTCCCAGACCCACAGCTAAGTATAACCTCGCCAATCGGGCAGAAG
CCGAGTGATGTGGAAGCAGTACCGATGACGTACAAGTATGTGATGTGTTT
CAAGTACAAGATTTCCTGGGAGGCGGCCATGACGAAAGAGATAGATGGCC
ACGACAAGACTGGAACCTTGACCAAGGTCAAGGAGCTGCCCGAGGGGCGG
AAGGCCATAGGTTCAAAGTGGTTGTTCTCTTGGAAGACGAATGAGAAGGG
CCTAATGGTCGACTTCAAGGCCCGTATGGTTGCGCGGGGTTCCTCTCAAA
TCCCGGCATCGACTTCCACCACTCATCCTCAGCGTGCCTGTCTGCAGCGT
CTATCAAGACGGTGA back to top
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