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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G7X9 |
| ProteomeId | EsuBft2597_3 |
| Protein domains | TMhelix |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 51 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 3.86e-11 |
| EggNOG OGs | COG0515@1|root,COG4886@1|root,KOG0192@2759|Eukaryota,KOG0619@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | RIPK4 |
| KEGG ko | ko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K14767,ko:K16175,ko:K16289 |
| KEGG Pathway | ko04064,ko04210,ko04217,ko04390,ko04391,ko04530,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05165,ko05169,ko05203,map04064,map04210,map04217,map04390,map04391,map04530,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05165,map05169,map05203 |
| GOs | GO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141 |
| EC | 2.7.11.1 |
| Description | regulation of response to stimulus |
| COG category | U |
| BRITE | ko00000,ko00001,ko01000,ko01001,ko03009 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2597_3a-0001 ID=EsuBft2597_3a-0001|Name=EsuBft2597_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=518bp|location=Sequence derived from alignment at Scaffold_376:68603..69235+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AGGGCGCATCGATGGTGGGCGTTGTAGTCGGCGCTGTGGCCGGCGCGCTG
GCGTTAGGAGCACTTGGGTTCTTCCTATATCGCCGACGAACCGTAAAGAG
CACCGACCCCGACCCGCCGGCCCCTCCTAGCAACGGTGGGAACAGCCTGG
AGCACGGCCGGGCCTGGAGCACGGCCGGGGTGAACCGCAGCAGCGACGGC
AGCATGACACCCATTCCGATCGGAGGAAACGATGCCCTGGGCCCGCCACC
TGCTATCCGGAACGGGACACCCACTCCGATCGGAGGAAACGATACCCTGG
GCCCGCCACCTGCTACCCGGAAAGAATCCCTGCCGTCGCCGACACCGTAT
GCGCATGATGTTGCACACCAGCGTGATGCTGTTCCTCCGTCATCCCCACA
CAGGCGTGACGGCGGTGCGCGGTCACACCACGGCCCGATAGCCTATTTAA
TGGCTTGATGTCTCGTTGTAGGTAGATCGATACCTCACAGTCTTATCGAT
CGTAGCTATTGCTTGATC back to topprotein sequence of EsuBft2597_3a-0001 >EsuBft2597_3 ID=EsuBft2597_3|Name=EsuBft2597_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=148bp
MVGVVVGAVAGALALGALGFFLYRRRTVKSTDPDPPAPPSNGGNSLEHGR
AWSTAGVNRSSDGSMTPIPIGGNDALGPPPAIRNGTPTPIGGNDTLGPPP
ATRKESLPSPTPYAHDVAHQRDAVPPSSPHRRDGGARSHHGPIAYLMA back to topmRNA from alignment at Scaffold_376:68603..69235+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2597_3a-0001 ID=EsuBft2597_3a-0001|Name=EsuBft2597_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=633bp|location=Sequence derived from alignment at Scaffold_376:68603..69235+ (Ectocarpus subulatus male Bft15b)
AGGGCGCATCGATGGTGGGCGTTGTAGTCGGCGCTGTGGCCGGCGCGCTG
GCGTTAGGAGCACTTGGGTTCTTCCTATATCGCCGACGAACCGTAAAGAG
CACCGACCCCGACCCGCCGGCCCCTCCTAGCAACGGTGGGAACAGCCTGG
AGCACGGCCGGGGTGAACCGCAGCAGCGACGGCAGCAGGACACCCATTCC
GATCGGANCTATCGCCGACGAACCGCGAAGAGCACGGACCCCGACCCGTC
GGCCCCTCCTAGCAACGGTGGGGACAGCCTGGAGCACGGCCGGGGTGAAC
CGCAGCAGCGACGGCAGCATGACACCCATTCCGATCGGAGGAAACGATGC
CCTGGGCCCGCCACCTGCTATCCGGAACGGGACACCCACTCCGATCGGAG
GAAACGATACCCTGGGCCCGCCACCTGCTACCCGGAAAGAATCCCTGCCG
TCGCCGACACCGTATGCGCATGATGTTGCACACCAGCGTGATGCTGTTCC
TCCGTCATCCCCACACAGGCGTGACGGCGGTGCGCGGTCACACCACGGCC
CGATAGCCTATTTAATGGCTTGATGTCTCGTTGTAGGTAGATCGATACCT
CACAGTCTTATCGATCGTAGCTATTGCTTGATC back to topCoding sequence (CDS) from alignment at Scaffold_376:68603..69235+ >EsuBft2597_3a-0001 ID=EsuBft2597_3a-0001|Name=EsuBft2597_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=447bp|location=Sequence derived from alignment at Scaffold_376:68603..69235+ (Ectocarpus subulatus male Bft15b)
ATGGTGGGCGTTGTAGTCGGCGCTGTGGCCGGCGCGCTGGCGTTAGGAGC
ACTTGGGTTCTTCCTATATCGCCGACGAACCGTAAAGAGCACCGACCCCG
ACCCGCCGGCCCCTCCTAGCAACGGTGGGAACAGCCTGGAGCACGGCCGG
GCCTGGAGCACGGCCGGGGTGAACCGCAGCAGCGACGGCAGCATGACACC
CATTCCGATCGGAGGAAACGATGCCCTGGGCCCGCCACCTGCTATCCGGA
ACGGGACACCCACTCCGATCGGAGGAAACGATACCCTGGGCCCGCCACCT
GCTACCCGGAAAGAATCCCTGCCGTCGCCGACACCGTATGCGCATGATGT
TGCACACCAGCGTGATGCTGTTCCTCCGTCATCCCCACACAGGCGTGACG
GCGGTGCGCGGTCACACCACGGCCCGATAGCCTATTTAATGGCTTGA back to top
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