EsuBft2595_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2595_3a-0001
Unique Name	EsuBft2595_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:393328..396357 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	946362.XP_004988912.1
ProteomeId	EsuBft2595_3
Protein domains	IPR012816
Protein domains	G3DSA
Protein domains	SSF56672
Protein domains	SSF143990
Protein domains	IPR000477
Protein domains	PTHR10178
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon os:drosophila melanogaster gn:pol pe:3 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	33154\|Opisthokonta
Length	2439
Hectar predicted targeting category	other localisation
Evalue	8.14e-72
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,39ZVA@33154\|Opisthokonta
Date last modified	2016-06-15
Date creation	2016-06-15
Description	dUTP metabolic process
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2595_3a	EsuBft2595_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 393328..396357 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2595_3a-0001-exon	EsuBft2595_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 393328..394806 -
EsuBft2595_3a-0001-exon	agat-exon-60153	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 395356..395993 -
EsuBft2595_3a-0001-exon	agat-exon-60152	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 396036..396357 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2595_3a-0001-cds	EsuBft2595_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 393328..394806 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2595_3a-0001	EsuBft2595_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 393328..396357 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:393328..396357-
coding sequence from alignment at Scaffold_630:393328..396357-

spliced messenger RNA

>EsuBft2595_3a-0001 ID=EsuBft2595_3a-0001|Name=EsuBft2595_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2439bp|location=Sequence derived from alignment at Scaffold_630:393328..396357- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACACGAGAGTACGTCAATAATAACGTCATTATTTTCTGGCAACCA
ACCGCCCTCTATTTTTTCGCAATGGACATCTTCGACATTTTCGGTCGATG
GAGTGGAAAACTCCTGTGCCGAACACTTCTTCGCAGCATCCAAGGCACGA
CACTTCGGTGACAAAGATATGCTTCACAACATCATGCTTTCGTTAGACCC
AGCAATGCACAAGCGCTACGGACGACAAGTGCGTGGCTTCACGCAACAGG
AATGGGAAAAGGTGAGAGAATACATCGTGCTTGTGGGCACTTTCGAGAAA
TTCTCCCGAAATCCTGCCATGCCCAGCCCTTTCGACAATACATGGGGCAT
CGGCATGAGAGCCGATCACCCCGAGGCCGCCAACTCCTCCAACTGGACAG
GAAAAAATTTACTTGGTAAGGCACTTCAATCGGTTCGAGACTTGCTTCGC
TCATCTGCATCACTCCCGATGCCACCCCTGGAAAACCCCACCGACTCAGC
ACTCGACAATAAAGGCATTCACGAGATCAACACCGACACTCAGCAACCCA
TCAATCCACCTTCAGAGTCACGTTCACAGCCAACCGACATCAACGCTCTT
TGGCCCTCTGACGCGCCTTCCGACTACGACAACGACATTCTCCACGTTGC
GGCCGCCAATTTCCACGTCGACAATCACCCCAAAGTACTTGCTGAACACG
GACCAGGTCTCGTTGACGGTATTGTAACCGTTGACGACGCTTCACAATCC
ACCAAAGTGCGCATACACTCAGGTTCCGCAACCTCAGGTTACCGCTGCGG
CGCTCTCCTGGACTCCGGCTCTCCAGCCACGTTCGTCAACCGCAATGCTC
TCGGCAACATGCGAGCCACAGGATGTGCGACACAAGACTGCGTCGCCACC
AACAACACTCGCTCTTGGGGAGGATTCGGTAGCTCTCAACCACTCGTCAC
TATTCAGATGCCGTCAAAGCACTTCGAAGTGCTAGGGCCATCACACTCTG
CCGATGCAGCACACCGCGATGCTCCCTTCATCGGCAATGTACCTTCCGAC
AACAACGGGGAACCTGCACAGCACTCCTCCCCCCCTTCCGACAATTTGTC
CCCACCGACACTTCCTCCACAGGAGCTTCTGGAGCGCTTGGATGCCGCTC
AACAGAAAATCTTCCTATCTCTTTGGGACCGCCTACCACCGCACATGCGA
GCCATGATGTTCAATCTACACGGCGAAGGCTGGACGCCTGCTGTCATAGA
TGAGCATGTCTTACACAACTTCCGAGACTTCTTCTCCACTTCACCCACGG
ACCTGGGCTGCTGCCCATTGCTACCATTCAAAATCGACATTCCGGACGGC
ACCCCACCGGTGCGAACCAAGCCATACTGCATGAACCCTCTGGTCGCCAA
ACAAGTGGACGCCACTTTGGACAAATACCTCGCGGCAGGTTTAATCCAAC
ACTCCACTTCTCCGTACTGCAGCCCCATCGTCGTCATTCCAAAACAATCT
GGAGAGCTTCGCATCACCGTCAACTACCAGAAACTCAACCGCATCAGCAG
CTTCAGTCAACTACCTGTTCCTCGTGTTGATGAGATCATGAACAAACTGC
ACCAGGGCTCCATATTCTCGCTCTTCGACTTCACGGGCTCCTTCCACCAA
ATTCCCGTGCACCCCGACACGATTCCGCTCACTGCATTCGCCACACCGAC
TTGCCTTTTCGAGTGGCTCAAAATGCCAATGGGTGCCAGCCAATCTTCAG
GCCGGTGGATGAAGGTCATCAATGAGGTTATCAAAAACCTCGAAGGCGTT
GACCCATATCTCGACGATGTGGTGCTCTACGACAAGACACCGGCGGATCA
CATCCGCACCATGCGCGCCTTCCTACAACGGCTGCCCAAGCACAAGCTCA
AGCTTTCACCGCCTAAGGCCACCATTGGCACGACACACTCTGCATTCTTG
GGACACACCATTACTCCCGACGATATCAGGCCCAACGCCAACAAAGTAGC
CGCGCTCGCGGCAATGCCAGTGCCAACCGACCTCAAGAAACTTTGCTCTC
TTCTCGGTGGTCTGAGCTACTACCGCAGCTTCGTCACGGCATTCCTCAAG
AAAAACTCGTCCTTCACCTTCACTTCCGACATGGAGGCTATCGTCCGAGA
GATCCTCAAAGAACTCTCCGAGCCGCTAATTATCGTCTTCCCCGACTGGA
AAGCCATCGAAGACGGCACCAGACCTCTCCGCCTCCACTGCGATGCCAGC
CTCGGTGGTCTGGGCGCGACACTAAAACAAGAACAGGCGGATGGCTCTGT
TCGCCCCATCGTCTTCATCAGCAGATCGACACTTGACGCTGAGCGTAACT
GGACACCACTCGACTTGGAAGCTGGCGCCATCGTTTGGGCCATTAAACGC
TTGCGTGGATACTTGCGCGGCACACACTTCCAAATTTAG

protein sequence of EsuBft2595_3a-0001

>EsuBft2595_3 ID=EsuBft2595_3|Name=EsuBft2595_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=812bp
MPHESTSIITSLFSGNQPPSIFSQWTSSTFSVDGVENSCAEHFFAASKAR
HFGDKDMLHNIMLSLDPAMHKRYGRQVRGFTQQEWEKVREYIVLVGTFEK
FSRNPAMPSPFDNTWGIGMRADHPEAANSSNWTGKNLLGKALQSVRDLLR
SSASLPMPPLENPTDSALDNKGIHEINTDTQQPINPPSESRSQPTDINAL
WPSDAPSDYDNDILHVAAANFHVDNHPKVLAEHGPGLVDGIVTVDDASQS
TKVRIHSGSATSGYRCGALLDSGSPATFVNRNALGNMRATGCATQDCVAT
NNTRSWGGFGSSQPLVTIQMPSKHFEVLGPSHSADAAHRDAPFIGNVPSD
NNGEPAQHSSPPSDNLSPPTLPPQELLERLDAAQQKIFLSLWDRLPPHMR
AMMFNLHGEGWTPAVIDEHVLHNFRDFFSTSPTDLGCCPLLPFKIDIPDG
TPPVRTKPYCMNPLVAKQVDATLDKYLAAGLIQHSTSPYCSPIVVIPKQS
GELRITVNYQKLNRISSFSQLPVPRVDEIMNKLHQGSIFSLFDFTGSFHQ
IPVHPDTIPLTAFATPTCLFEWLKMPMGASQSSGRWMKVINEVIKNLEGV
DPYLDDVVLYDKTPADHIRTMRAFLQRLPKHKLKLSPPKATIGTTHSAFL
GHTITPDDIRPNANKVAALAAMPVPTDLKKLCSLLGGLSYYRSFVTAFLK
KNSSFTFTSDMEAIVREILKELSEPLIIVFPDWKAIEDGTRPLRLHCDAS
LGGLGATLKQEQADGSVRPIVFISRSTLDAERNWTPLDLEAGAIVWAIKR
LRGYLRGTHFQI

mRNA from alignment at Scaffold_630:393328..396357-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2595_3a-0001 ID=EsuBft2595_3a-0001|Name=EsuBft2595_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3030bp|location=Sequence derived from alignment at Scaffold_630:393328..396357- (Ectocarpus subulatus male Bft15b)
ATGCCACACGAGAGTACGTCAATAATAACGTCATTATTTTCTGGCAACCA
ACCGCCCTCTATTTTTTCGCAATGGACATCTTCGACATTTTCGGTCGATG
GAGTGGAAAACTCCTGTGCCGAACACTTCTTCGCAGCATCCAAGGCACGA
CACTTCGGTGACAAAGATATGCTTCACAACATCATGCTTTCGTTAGACCC
AGCAATGCACAAGCGCTACGGACGACAAGTGCGTGGCTTCACGCAACAGG
AATGGGAAAAGGTGAGAGAATACATCGTGCTTGTGGGCACTTTCGAGAAA
TTCTCCCGAAATCCTGCCATGCGTCAATAACTTCTCAACACAGGCACACG
CATTTTAGCCGAAGCCAGCCCTTTCGACAATACATGGGGCATCGGCATGA
GAGCCGATCACCCCGAGGCCGCCAACTCCTCCAACTGGACAGGAAAAAAT
TTACTTGGTAAGGCACTTCAATCGGTTCGAGACTTGCTTCGCTCATCTGC
ATCACTCCCGATGCCACCCCTGGAAAACCCCACCGACTCAGCACTCGACA
ATAAAGGCATTCACGAGATCAACACCGACACTCAGCAACCCATCAATCCA
CCTTCAGAGTCACGTTCACAGCCAACCGACATCAACGCTCTTTGGCCCTC
TGACGCGCCTTCCGACTACGACAACGACATTCTCCACGTTGCGGCCGCCA
ATTTCCACGTCGACAATCACCCCAAAGTACTTGCTGAACACGGACCAGGT
CTCGTTGACGGTATTGTAACCGTTGACGACGCTTCACAATCCACCAAAGT
GCGCATACACTCAGGTTCCGCAACCTCAGGTTACCGCTGCGGCGCTCTCC
TGGACTCCGGCTCTCCAGCCACGTTCGTCAACCGCAATGCTCTCGGCAAC
ATGCGAGCCACAGGATGTGCGACACAAGACTGCGTCGCCACCAACAACAC
TCGCTCTTGGGGAGGATTCGGTAGCTCTCAACCACTCGTCACTATTCAGA
TGGTACGTCTTAGTGTTCAATTCTATCACAAGGACCAACCCCCTGCTTCA
CTCGCCGTCTGGGCTCATGTAGTTCCAGCCAACACCATGCAACAGTCAGT
TCTACTAGGACGCGACAGCTTCATGCGCTACACCACCCGCACCTACACCG
TGCTACCTACGCGTTCTCCAACCCAACGCGTGCTGGGAAAATATGCTTTC
TCTCACCACCAAGCCCGCGGCGCCTCAGCCTACATTCCAGATCCCTCTGC
AGTTCCAGGAAGATTCCACCTCAACTACGCTGGAAAATCTGGATTATCCC
TCTCCTCAAATCACCAATTGATCGAAGTCAACCTCGTCCGCGCCAATGGA
TATCCTGCTCTCAAAGGACACTACCTGGTAGACACTATTCCAGATTTGTC
TCCTTCAGACGAACTCTTCATCTCTCACTGCCGCCAATTTCTACCTCTCG
CAGGATGCGCAGAGCTTGAACCGGGCGACATTTTAGGTACAGCAGCCGCC
CCTCTCATGCGTGTATCTATCAACACTATTCAACAATTCAGCGACAAGCA
GCCGTCAAAGCACTTCGAAGTGCTAGGGCCATCACACTCTGCCGATGCAG
CACACCGCGATGCTCCCTTCATCGGCAATGTACCTTCCGACAACAACGGG
GAACCTGCACAGCACTCCTCCCCCCCTTCCGACAATTTGTCCCCACCGAC
ACTTCCTCCACAGGAGCTTCTGGAGCGCTTGGATGCCGCTCAACAGAAAA
TCTTCCTATCTCTTTGGGACCGCCTACCACCGCACATGCGAGCCATGATG
TTCAATCTACACGGCGAAGGCTGGACGCCTGCTGTCATAGATGAGCATGT
CTTACACAACTTCCGAGACTTCTTCTCCACTTCACCCACGGACCTGGGCT
GCTGCCCATTGCTACCATTCAAAATCGACATTCCGGACGGCACCCCACCG
GTGCGAACCAAGCCATACTGCATGAACCCTCTGGTCGCCAAACAAGTGGA
CGCCACTTTGGACAAATACCTCGCGGCAGGTTTAATCCAACACTCCACTT
CTCCGTACTGCAGCCCCATCGTCGTCATTCCAAAACAATCTGGAGAGCTT
CGCATCACCGTCAACTACCAGAAACTCAACCGCATCAGCAGCTTCAGTCA
ACTACCTGTTCCTCGTGTTGATGAGATCATGAACAAACTGCACCAGGGCT
CCATATTCTCGCTCTTCGACTTCACGGGCTCCTTCCACCAAATTCCCGTG
CACCCCGACACGATTCCGCTCACTGCATTCGCCACACCGACTTGCCTTTT
CGAGTGGCTCAAAATGCCAATGGGTGCCAGCCAATCTTCAGGCCGGTGGA
TGAAGGTCATCAATGAGGTTATCAAAAACCTCGAAGGCGTTGACCCATAT
CTCGACGATGTGGTGCTCTACGACAAGACACCGGCGGATCACATCCGCAC
CATGCGCGCCTTCCTACAACGGCTGCCCAAGCACAAGCTCAAGCTTTCAC
CGCCTAAGGCCACCATTGGCACGACACACTCTGCATTCTTGGGACACACC
ATTACTCCCGACGATATCAGGCCCAACGCCAACAAAGTAGCCGCGCTCGC
GGCAATGCCAGTGCCAACCGACCTCAAGAAACTTTGCTCTCTTCTCGGTG
GTCTGAGCTACTACCGCAGCTTCGTCACGGCATTCCTCAAGAAAAACTCG
TCCTTCACCTTCACTTCCGACATGGAGGCTATCGTCCGAGAGATCCTCAA
AGAACTCTCCGAGCCGCTAATTATCGTCTTCCCCGACTGGAAAGCCATCG
AAGACGGCACCAGACCTCTCCGCCTCCACTGCGATGCCAGCCTCGGTGGT
CTGGGCGCGACACTAAAACAAGAACAGGCGGATGGCTCTGTTCGCCCCAT
CGTCTTCATCAGCAGATCGACACTTGACGCTGAGCGTAACTGGACACCAC
TCGACTTGGAAGCTGGCGCCATCGTTTGGGCCATTAAACGCTTGCGTGGA
TACTTGCGCGGCACACACTTCCAAATTTAG

Coding sequence (CDS) from alignment at Scaffold_630:393328..396357-

>EsuBft2595_3a-0001 ID=EsuBft2595_3a-0001|Name=EsuBft2595_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2439bp|location=Sequence derived from alignment at Scaffold_630:393328..396357- (Ectocarpus subulatus male Bft15b)
ATGCCACACGAGAGTACGTCAATAATAACGTCATTATTTTCTGGCAACCA
ACCGCCCTCTATTTTTTCGCAATGGACATCTTCGACATTTTCGGTCGATG
GAGTGGAAAACTCCTGTGCCGAACACTTCTTCGCAGCATCCAAGGCACGA
CACTTCGGTGACAAAGATATGCTTCACAACATCATGCTTTCGTTAGACCC
AGCAATGCACAAGCGCTACGGACGACAAGTGCGTGGCTTCACGCAACAGG
AATGGGAAAAGGTGAGAGAATACATCGTGCTTGTGGGCACTTTCGAGAAA
TTCTCCCGAAATCCTGCCATGCCCAGCCCTTTCGACAATACATGGGGCAT
CGGCATGAGAGCCGATCACCCCGAGGCCGCCAACTCCTCCAACTGGACAG
GAAAAAATTTACTTGGTAAGGCACTTCAATCGGTTCGAGACTTGCTTCGC
TCATCTGCATCACTCCCGATGCCACCCCTGGAAAACCCCACCGACTCAGC
ACTCGACAATAAAGGCATTCACGAGATCAACACCGACACTCAGCAACCCA
TCAATCCACCTTCAGAGTCACGTTCACAGCCAACCGACATCAACGCTCTT
TGGCCCTCTGACGCGCCTTCCGACTACGACAACGACATTCTCCACGTTGC
GGCCGCCAATTTCCACGTCGACAATCACCCCAAAGTACTTGCTGAACACG
GACCAGGTCTCGTTGACGGTATTGTAACCGTTGACGACGCTTCACAATCC
ACCAAAGTGCGCATACACTCAGGTTCCGCAACCTCAGGTTACCGCTGCGG
CGCTCTCCTGGACTCCGGCTCTCCAGCCACGTTCGTCAACCGCAATGCTC
TCGGCAACATGCGAGCCACAGGATGTGCGACACAAGACTGCGTCGCCACC
AACAACACTCGCTCTTGGGGAGGATTCGGTAGCTCTCAACCACTCGTCAC
TATTCAGATGCCGTCAAAGCACTTCGAAGTGCTAGGGCCATCACACTCTG
CCGATGCAGCACACCGCGATGCTCCCTTCATCGGCAATGTACCTTCCGAC
AACAACGGGGAACCTGCACAGCACTCCTCCCCCCCTTCCGACAATTTGTC
CCCACCGACACTTCCTCCACAGGAGCTTCTGGAGCGCTTGGATGCCGCTC
AACAGAAAATCTTCCTATCTCTTTGGGACCGCCTACCACCGCACATGCGA
GCCATGATGTTCAATCTACACGGCGAAGGCTGGACGCCTGCTGTCATAGA
TGAGCATGTCTTACACAACTTCCGAGACTTCTTCTCCACTTCACCCACGG
ACCTGGGCTGCTGCCCATTGCTACCATTCAAAATCGACATTCCGGACGGC
ACCCCACCGGTGCGAACCAAGCCATACTGCATGAACCCTCTGGTCGCCAA
ACAAGTGGACGCCACTTTGGACAAATACCTCGCGGCAGGTTTAATCCAAC
ACTCCACTTCTCCGTACTGCAGCCCCATCGTCGTCATTCCAAAACAATCT
GGAGAGCTTCGCATCACCGTCAACTACCAGAAACTCAACCGCATCAGCAG
CTTCAGTCAACTACCTGTTCCTCGTGTTGATGAGATCATGAACAAACTGC
ACCAGGGCTCCATATTCTCGCTCTTCGACTTCACGGGCTCCTTCCACCAA
ATTCCCGTGCACCCCGACACGATTCCGCTCACTGCATTCGCCACACCGAC
TTGCCTTTTCGAGTGGCTCAAAATGCCAATGGGTGCCAGCCAATCTTCAG
GCCGGTGGATGAAGGTCATCAATGAGGTTATCAAAAACCTCGAAGGCGTT
GACCCATATCTCGACGATGTGGTGCTCTACGACAAGACACCGGCGGATCA
CATCCGCACCATGCGCGCCTTCCTACAACGGCTGCCCAAGCACAAGCTCA
AGCTTTCACCGCCTAAGGCCACCATTGGCACGACACACTCTGCATTCTTG
GGACACACCATTACTCCCGACGATATCAGGCCCAACGCCAACAAAGTAGC
CGCGCTCGCGGCAATGCCAGTGCCAACCGACCTCAAGAAACTTTGCTCTC
TTCTCGGTGGTCTGAGCTACTACCGCAGCTTCGTCACGGCATTCCTCAAG
AAAAACTCGTCCTTCACCTTCACTTCCGACATGGAGGCTATCGTCCGAGA
GATCCTCAAAGAACTCTCCGAGCCGCTAATTATCGTCTTCCCCGACTGGA
AAGCCATCGAAGACGGCACCAGACCTCTCCGCCTCCACTGCGATGCCAGC
CTCGGTGGTCTGGGCGCGACACTAAAACAAGAACAGGCGGATGGCTCTGT
TCGCCCCATCGTCTTCATCAGCAGATCGACACTTGACGCTGAGCGTAACT
GGACACCACTCGACTTGGAAGCTGGCGCCATCGTTTGGGCCATTAAACGC
TTGCGTGGATACTTGCGCGGCACACACTTCCAAATTTAG