EsuBft2595_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2595_2a-0001
Unique Name	EsuBft2595_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:407446..412293 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FSK2
ProteomeId	EsuBft2595_2
Protein domains	TMhelix
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR006912
Protein domains	PTHR22930
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	148
Hectar predicted targeting category	signal anchor
Evalue	2.52e-37
EggNOG OGs	2E2RF@1\|root,2S9YA@2759\|Eukaryota
Date last modified	2016-06-15
Date creation	2016-06-15
Description	Plant transposon protein
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0016788

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2595_2a	EsuBft2595_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 407446..412293 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2595_2a-0001-exon	agat-exon-60151	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 407446..407915 +
EsuBft2595_2a-0001-exon	agat-exon-60149	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 408226..408302 +
EsuBft2595_2a-0001-exon	EsuBft2595_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 409304..409752 +
EsuBft2595_2a-0001-exon	agat-exon-60150	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 411808..412293 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2595_2a-0001-cds	EsuBft2595_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 407446..407915 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2595_2a-0001	EsuBft2595_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 407446..412293 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:407446..412293+
coding sequence from alignment at Scaffold_630:407446..412293+

spliced messenger RNA

>EsuBft2595_2a-0001 ID=EsuBft2595_2a-0001|Name=EsuBft2595_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1482bp|location=Sequence derived from alignment at Scaffold_630:407446..412293+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGTCGTTCAGGTGCAAGGGTGGGACAGGCCAAGCGGGTTCGTGTA
CGAGCCTATCGATGCTAACACAGGCGGCGGCAGCCGACGACGGCGGCCGC
GGAACGTCCTGGTCGCCTGCGCTCTTTTTTGCGCCGTCGCGCTCGGCATG
GTCACGGTGAGGATGTCGTCCCCACTGGAACATTCCACCGTGCCGGGGTT
GGCCAACCCCACAACCTTAGCCGCAGGAGATGGTGGGGCGGGGTCACCCA
AGCAGCAGGAGCAGCAGTACCAGCCGCGCATGTCGTTGTCGACGATGAAC
AGAGGTCCTCTCGGGGTGAGGGTATCCAACCACTACCAACACGTCAACAC
GACGCATGGCACGACGGACTTGTCTACATACCCGTGGGAGCACGTCGCAG
AGCCGTACCAAGCAACAAGGCTGGAGCTCACAAGCGTACCGGAGGGAGTC
GTAGGCGGGTCGCACATCAACTACTTCGGGCGGGCTGTGTCGGTTTCGGA
GACAGAACTGGAGTCACGCGTGAAGAATGCGAGGCGGCTCGTTGTCACAC
GACCCACCCGACTGCACGGCGCCATCGATGGCTTCGGGTTTGATGACCTG
CTGCCTTCCACCGTGCTCTCGGTGGCCCTCTCGGCCCTTCACCAAGTCCA
GCAGCGAAGCCGCACGCATCGCACGCTAGCCCAGTGGGCCGTCGCACTAC
GCGCCTTCGACGACGCCTTCGAGTGGGAGGATAGCGGTGAGCAGGATGGT
CCGCCCGTGAAGCGTTCGAGGCAAGTGAAGGAGCGAAGAAATTGGAGTAC
CTCGGCGTGGTGGCTGCAGCTCCAAAACGCAGACCTCTTGGACCACACCA
CAGAGGAGGCGAAGGTCTTCCACACTCGCTTCCGGGTACCTCACGCCTTC
TTTCTAGAACTGGTGAAGATGGCGAGGGGGAAGAAGTGGTTCTCTGTGCG
AGAAAAGGATGCTGTCGGACGTCAGGGGATACCAATTGAACTGAAGTGGG
TGACCCTCATCGCTCCGTCCAAGTACCCGGCGAACAGCGAGGACACTGCT
TTCTCGAGGACGCTTGAGAGCGTGCGCAAGGACGTTGAGTGCTTCTTCGG
TATCCTGAAGGGACGTTTCAGGATCCTCAAGCTCCGCCTCGGGTACCGCT
CCAAGAAAGACATCGACAACATCTTCTACACCTGCTGCATCCTGCACAAC
ATGCTTCACACCTTCGACGGCATGGACGTGTTCGAGGAAGATGTCGACTG
GGTGGGGAGCGCTGGCCTGCACGACCCCTGGGACCATGACCCACTGACAG
ACTTCACGTCTATCGGATCGACCGGGAAGCTTTCGGAGAAGGAGGGAGGG
GAGGGGGGGGAGGAAAGCAGCGAGACGATCGACCAGCACCCGGCGCACAG
AGAGCTCAAGAAACAGCTAATCGAGAGCTTTTCTTACCGGAAGAGACACA
ACGACATTACATGGCTTTCGAGGCCCACGTGA

protein sequence of EsuBft2595_2a-0001

>EsuBft2595_2 ID=EsuBft2595_2|Name=EsuBft2595_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=493bp
MSVVQVQGWDRPSGFVYEPIDANTGGGSRRRRPRNVLVACALFCAVALGM
VTVRMSSPLEHSTVPGLANPTTLAAGDGGAGSPKQQEQQYQPRMSLSTMN
RGPLGVRVSNHYQHVNTTHGTTDLSTYPWEHVAEPYQATRLELTSVPEGV
VGGSHINYFGRAVSVSETELESRVKNARRLVVTRPTRLHGAIDGFGFDDL
LPSTVLSVALSALHQVQQRSRTHRTLAQWAVALRAFDDAFEWEDSGEQDG
PPVKRSRQVKERRNWSTSAWWLQLQNADLLDHTTEEAKVFHTRFRVPHAF
FLELVKMARGKKWFSVREKDAVGRQGIPIELKWVTLIAPSKYPANSEDTA
FSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKKDIDNIFYTCCILHN
MLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGG
EGGEESSETIDQHPAHRELKKQLIESFSYRKRHNDITWLSRPT

mRNA from alignment at Scaffold_630:407446..412293+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2595_2a-0001 ID=EsuBft2595_2a-0001|Name=EsuBft2595_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4848bp|location=Sequence derived from alignment at Scaffold_630:407446..412293+ (Ectocarpus subulatus male Bft15b)
ATGAGTGTCGTTCAGGTGCAAGGGTGGGACAGGCCAAGCGGGTTCGTGTA
CGAGCCTATCGATGCTAACACAGGCGGCGGCAGCCGACGACGGCGGCCGC
GGAACGTCCTGGTCGCCTGCGCTCTTTTTTGCGCCGTCGCGCTCGGCATG
GTCACGGTGAGGATGTCGTCCCCACTGGAACATTCCACCGTGCCGGGGTT
GGCCAACCCCACAACCTTAGCCGCAGGAGATGGTGGGGCGGGGTCACCCA
AGCAGCAGGAGCAGCAGTACCAGCCGCGCATGTCGTTGTCGACGATGAAC
AGAGGTCCTCTCGGGGTGAGGGTATCCAACCACTACCAACACGTCAACAC
GACGCATGGCACGACGGACTTGTCTACATACCCGTGGGAGCACGTCGCAG
AGCCGTACCAAGCAACAAGGCTGGAGCTCACAAGCGTACCGGAGGGAGTC
GTAGGCGGGTCGCACATCAAGTAAGTACGCGTGTGTGTTCGCGGTCGGAA
CTGCAATGACTCTTGGTTTCAATAACTCTTGGTTTGGATAATGAAAATGA
ACACATCCATAGACTAATATATATACCGCATATGACATAAGATAACATAC
CCCTTGACCAATTTTCGAAGCTCGATTTCTCAACTGCAGGAACAGCCACA
ACGCCGAAAACGGCGGCGTTGAGACTGTCTCGTCGAGAGTTTTTCGAAGA
TGTACCGTTTCGTCTATGCATCCTCTTCGAGCTTTGAAAATCGGTCAAGG
GGGTGTGTTATCTTGTGTCATATACGGTAGCTACTTCGGGCGGGCTGTGT
CGGTTTCGGAGACAGAACTGGAGTCACGCGTGAAGAATGCGAGGCGGCTC
GTTGTCAGTAAACTTGATCGACTTCATAAGTCGCGAGGGAAGGGATTGCT
GTACCCTTCTCGCGATAAAAATATCTCAGGCAGGAACCCCCCCCTCCTAG
GTGACCCCGGTTGGGTCGTCTAGCTAAATGGTAGAAGTGGAGGATAGGGG
CCAGAGGGGCAGATGACAGTGTCCCATGATGGGAGCAAAACGAATATATA
TATAAATATATATGCCGACGTGCGAGAAATTGAACTCGATTTCGATACGA
AAAAAAAAAGAACGGGGGGAATGCACCTCTCTTGCGGGAAGGCCCAATGT
CGGTCTTTTCCCGGCCTGTTATTTCCTTCTGGCATATAATATTAATATTG
TCTGGCTATCAGGCCCATGTTTATGGTCACCAAATCTTTGGAAAAATGTC
TAAATTTAAATTTTCAAACATTTGCGGATAAAGATTTTGTTTCACTTTTT
ATGGGATAAAATCTTCGGCAAAATATTNGTCACCAAATCTTTGGAAAAAA
GTCTAAATTTAAAATTTCAAACATTTGCGGATAAAGATTTTGTTTCACTT
TTTATGGGATAAAATCTTCGGCAAAATATTCTCAAAGATTTTGAAATGGG
GCAAAAGTCGCTCGGTTGACAAAATGTTTGACAAAATGACACAACGAGTC
CATCTCTATCAAAGAAAAGAGTCAGGCCGAGTCTTATTACGTCGTGATTA
TTGCGGGATTTTTATTGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCAACGCCCCAGCACACCCATGTGGCTGCCCTTCGG
CTGCACCGCCCTCTCCTGTTGGGCTCTATCAGCATCTGCTAGCGTACACC
CTCTTCAGCACGACCCACCCGACTGCACGGCGCCATCGATGGCTTCGGGT
TTGATGACCTGCTGCCTTCCACCGTGCTCTCGGTGGCCCTCTCGGCCCTT
CACCAAGTCCAGCAGCGAAGCCGCACGCATCGCACGCTAGCCCAGTGGGC
CGTCGCACTACGCGCCTTCGACGACGCCTTCGAGTGGGAGGATAGCGGTG
AGCAGGATGGTCCGCCCGTGAAGCGTTCGAGGCAAGTGAAGGAGCGAAGA
AATTGGAGTACCTCGGCGTGGTGGCTGCAGCTCCAAAACGCAGACCTCTT
GGACCACACCACAGAGGAGGCGAAGGTCTTCCACACTCGCTTCCGGGTAC
CTCACGCCTTCTTTCTAGAACTGGTGAAGATGGCGAGGGGGAAGAAGTGG
TTCTCTGTGCGAGAAAAGGATGCTGTCGGACGTCAGGGGATACCAATTGA
ACTGAAGGTGAGCTCCTATCGGTCTGGACTGTACTGCTGTGGCACCGCTC
GCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCCCATCCACGCCCCGTCATGGGCCACCCGCTCTACACTCC
CATCGCACACAACTGAGCCACCCGAATTATCGATCACGGTTAACCTACAT
CTAAGCCCCTACCCGCCGGAATTTTTGTTTAAAATCCTGCTGTTATTTGT
CCTGCCGAACAGTGGGTGACCCTCATCGCTCCGTCCAAGTACCCGGCGAA
CAGCGAGGACACTGCTTTCTCGAGGACGCTTGAGAGCGTGCGCAAGGACG
TTGAGTGCTTCTTCGGTATCCTGAAGGGACGTTTCAGGATCCTCAAGCTC
CGCCTCGGGTACCGCTCCAAGAAAGACATCGACAACATCTTCTACACCTG
CTGCATCCTGCACAACATGCTTCACACCTTCGACGGCATGGACGTGTTCG
AGGAAGATGTCGACTGGGTGGGGAGCGCTGGCCTGCACGACCCCTGGGAC
CATGACCCACTGACAGACTTCACGTCTATCGGATCGACCGGGAAGCTTTC
GGAGAAGGAGGGAGGGGAGGGGGGGGAGGAAAGCAGCGAGACGATCGACC
AGCACCCGGCGCACAGAGAGCTCAAGAAACAGCTAATCGAGAGCTTTTCT
TACCGGAAGAGACACAACGACATTACATGGCTTTCGAGGCCCACGTGA

Coding sequence (CDS) from alignment at Scaffold_630:407446..412293+

>EsuBft2595_2a-0001 ID=EsuBft2595_2a-0001|Name=EsuBft2595_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1482bp|location=Sequence derived from alignment at Scaffold_630:407446..412293+ (Ectocarpus subulatus male Bft15b)
ATGAGTGTCGTTCAGGTGCAAGGGTGGGACAGGCCAAGCGGGTTCGTGTA
CGAGCCTATCGATGCTAACACAGGCGGCGGCAGCCGACGACGGCGGCCGC
GGAACGTCCTGGTCGCCTGCGCTCTTTTTTGCGCCGTCGCGCTCGGCATG
GTCACGGTGAGGATGTCGTCCCCACTGGAACATTCCACCGTGCCGGGGTT
GGCCAACCCCACAACCTTAGCCGCAGGAGATGGTGGGGCGGGGTCACCCA
AGCAGCAGGAGCAGCAGTACCAGCCGCGCATGTCGTTGTCGACGATGAAC
AGAGGTCCTCTCGGGGTGAGGGTATCCAACCACTACCAACACGTCAACAC
GACGCATGGCACGACGGACTTGTCTACATACCCGTGGGAGCACGTCGCAG
AGCCGTACCAAGCAACAAGGCTGGAGCTCACAAGCGTACCGGAGGGAGTC
GTAGGCGGGTCGCACATCAACTACTTCGGGCGGGCTGTGTCGGTTTCGGA
GACAGAACTGGAGTCACGCGTGAAGAATGCGAGGCGGCTCGTTGTCACAC
GACCCACCCGACTGCACGGCGCCATCGATGGCTTCGGGTTTGATGACCTG
CTGCCTTCCACCGTGCTCTCGGTGGCCCTCTCGGCCCTTCACCAAGTCCA
GCAGCGAAGCCGCACGCATCGCACGCTAGCCCAGTGGGCCGTCGCACTAC
GCGCCTTCGACGACGCCTTCGAGTGGGAGGATAGCGGTGAGCAGGATGGT
CCGCCCGTGAAGCGTTCGAGGCAAGTGAAGGAGCGAAGAAATTGGAGTAC
CTCGGCGTGGTGGCTGCAGCTCCAAAACGCAGACCTCTTGGACCACACCA
CAGAGGAGGCGAAGGTCTTCCACACTCGCTTCCGGGTACCTCACGCCTTC
TTTCTAGAACTGGTGAAGATGGCGAGGGGGAAGAAGTGGTTCTCTGTGCG
AGAAAAGGATGCTGTCGGACGTCAGGGGATACCAATTGAACTGAAGTGGG
TGACCCTCATCGCTCCGTCCAAGTACCCGGCGAACAGCGAGGACACTGCT
TTCTCGAGGACGCTTGAGAGCGTGCGCAAGGACGTTGAGTGCTTCTTCGG
TATCCTGAAGGGACGTTTCAGGATCCTCAAGCTCCGCCTCGGGTACCGCT
CCAAGAAAGACATCGACAACATCTTCTACACCTGCTGCATCCTGCACAAC
ATGCTTCACACCTTCGACGGCATGGACGTGTTCGAGGAAGATGTCGACTG
GGTGGGGAGCGCTGGCCTGCACGACCCCTGGGACCATGACCCACTGACAG
ACTTCACGTCTATCGGATCGACCGGGAAGCTTTCGGAGAAGGAGGGAGGG
GAGGGGGGGGAGGAAAGCAGCGAGACGATCGACCAGCACCCGGCGCACAG
AGAGCTCAAGAAACAGCTAATCGAGAGCTTTTCTTACCGGAAGAGACACA
ACGACATTACATGGCTTTCGAGGCCCACGTGA