EsuBft2582_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2582_6a-0001
Unique NameEsuBft2582_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:709175..712606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2582_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length93
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2582_6aEsuBft2582_6aEctocarpus subulatus male Bft15bgeneScaffold_499 709175..712606 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2582_6a-0001-exonEsuBft2582_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 709175..710037 -
EsuBft2582_6a-0001-exonagat-exon-90294Ectocarpus subulatus male Bft15bexonScaffold_499 712537..712606 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2582_6a-0001-exonagat-three_prime_utr-10425Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 709175..709378 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2582_6a-0001-cdsEsuBft2582_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 709379..710037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2582_6a-0001EsuBft2582_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 709379..712606 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2582_6a-0001 ID=EsuBft2582_6a-0001|Name=EsuBft2582_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=933bp|location=Sequence derived from alignment at Scaffold_499:709175..712606- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGGATTCTCGCGTTGGTTTGTTTCGTACAGCCACCCTCAGGGAAA
AGACTGCTCCAAACCAACAGGGAGGCAAGGCGCCCTCCGTGGCGAGCAAG
AAGAGGAGGGGCGGGCGGCAGAGGCGGGGGGCGGTTCTGACGGCATCAGG
AGGAGCAAGAGGACGACCGCAGTGAGTGTGAGGCATATCGCCCTCCTTGG
CGGGAACTTGAAGGGCGGGGGCGGGGGGGCTAGAGCGAGCAGCGAGGAAG
AGTCGTCGGAGGAGTCCGAAGAGGAAGAAAGTTCCGAGAATGAGGAGGAC
GACGAGGACGACAAGGACGACGAGGGGGAGGGGGAGAGGGAGGGGGAGGA
AGAGGAGGGCGGGGGGGAGGGGGGGGAGGAAGGTCCGGCTCTGGCGAAAG
AGACGGTTTGTGTCGAGAAGGTGGTTCTCCGGCACAAACTGCACACCGGT
TCGGCCTCTTGTTTTTGCTCTGCCTGTCGCGTGCATGAGTACGAGCGGTG
CTATACCAGGAGCAAGTACCCGGCCTGCGGCACGAAGCTCGAAGAGCAGG
TAGTAGAGGAGACAGTCATCATGGTCACTGGTGTAGATCCTGTGGTTGGG
GTGGATCCTGTGGTCGGGAGCAAAAAGATGGCGAAGAAAATTGTTTTCCG
GAAGGGGGCGACCACCTGTCAGATGGACAGGGTTACCGGTACACAGTTTG
GGGTCTCATTCTGCGGTAGCAGCAAGTAGATATTATTGAGGGGCTGGGTG
ATGGTGCGTTCAAATCTTGGTTTGCATTTTTGCTGTATTTTTGTGAAGAT
AAGCGCGTGGTTTGGTGGAGATTGTGCGTGTTGCGACTTGTTAACTTGCA
GTTTTTCTGTTGTGCTTCAATCGGCGGCGGCGAGAAAAGTGTAACGTACA
AAACCCATCATAACTTTGTTCAGAATGCGAAAA
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protein sequence of EsuBft2582_6a-0001

>EsuBft2582_6 ID=EsuBft2582_6|Name=EsuBft2582_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=242bp
MRGFSRWFVSYSHPQGKDCSKPTGRQGALRGEQEEEGRAAEAGGGSDGIR
RSKRTTAVSVRHIALLGGNLKGGGGGARASSEEESSEESEEEESSENEED
DEDDKDDEGEGEREGEEEEGGGEGGEEGPALAKETVCVEKVVLRHKLHTG
SASCFCSACRVHEYERCYTRSKYPACGTKLEEQVVEETVIMVTGVDPVVG
VDPVVGSKKMAKKIVFRKGATTCQMDRVTGTQFGVSFCGSSK
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mRNA from alignment at Scaffold_499:709175..712606-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2582_6a-0001 ID=EsuBft2582_6a-0001|Name=EsuBft2582_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3432bp|location=Sequence derived from alignment at Scaffold_499:709175..712606- (Ectocarpus subulatus male Bft15b)
ATGCGAGGATTCTCGCGTTGGTTTGTTTCGTACAGCCACCCTCAGGGAAA
AGACTGCTCCAAACCAACAGGTGTGTAAACGAGTACGCGTGCTATCTACA
TGTAACAACATATTCGCCTGATTGAGAGCGAAGTATCTGATTGAGAGCGA
GAGCCAAAAAAATTGAAATTTCGGGTCCAGACGCCTCTTGCCATTTCTTG
GCAAGTAGGGGACGGGCTATTCCAAGAAGCGGTGCAAANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTAAGAGGAAGCGTTCAGGGAGGCAAGGCGCCCTCCGTGGCGAGCAAGA
AGAGGAGGGGCGGGCGGCAGAGGCGGGGGGCGGTTCTGACGGCATCAGGA
GGAGCAAGAGGACGACCGCAGTGAGTGTGAGGCATATCGCCCTCCTTGGC
GGGAACTTGAAGGGCGGGGGCGGGGGGGCTAGAGCGAGCAGCGAGGAAGA
GTCGTCGGAGGAGTCCGAAGAGGAAGAAAGTTCCGAGAATGAGGAGGACG
ACGAGGACGACAAGGACGACGAGGGGGAGGGGGAGAGGGAGGGGGAGGAA
GAGGAGGGCGGGGGGGAGGGGGGGGAGGAAGGTCCGGCTCTGGCGAAAGA
GACGGTTTGTGTCGAGAAGGTGGTTCTCCGGCACAAACTGCACACCGGTT
CGGCCTCTTGTTTTTGCTCTGCCTGTCGCGTGCATGAGTACGAGCGGTGC
TATACCAGGAGCAAGTACCCGGCCTGCGGCACGAAGCTCGAAGAGCAGGT
AGTAGAGGAGACAGTCATCATGGTCACTGGTGTAGATCCTGTGGTTGGGG
TGGATCCTGTGGTCGGGAGCAAAAAGATGGCGAAGAAAATTGTTTTCCGG
AAGGGGGCGACCACCTGTCAGATGGACAGGGTTACCGGTACACAGTTTGG
GGTCTCATTCTGCGGTAGCAGCAAGTAGATATTATTGAGGGGCTGGGTGA
TGGTGCGTTCAAATCTTGGTTTGCATTTTTGCTGTATTTTTGTGAAGATA
AGCGCGTGGTTTGGTGGAGATTGTGCGTGTTGCGACTTGTTAACTTGCAG
TTTTTCTGTTGTGCTTCAATCGGCGGCGGCGAGAAAAGTGTAACGTACAA
AACCCATCATAACTTTGTTCAGAATGCGAAAA
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Coding sequence (CDS) from alignment at Scaffold_499:709175..712606-

>EsuBft2582_6a-0001 ID=EsuBft2582_6a-0001|Name=EsuBft2582_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=729bp|location=Sequence derived from alignment at Scaffold_499:709175..712606- (Ectocarpus subulatus male Bft15b)
ATGCGAGGATTCTCGCGTTGGTTTGTTTCGTACAGCCACCCTCAGGGAAA
AGACTGCTCCAAACCAACAGGGAGGCAAGGCGCCCTCCGTGGCGAGCAAG
AAGAGGAGGGGCGGGCGGCAGAGGCGGGGGGCGGTTCTGACGGCATCAGG
AGGAGCAAGAGGACGACCGCAGTGAGTGTGAGGCATATCGCCCTCCTTGG
CGGGAACTTGAAGGGCGGGGGCGGGGGGGCTAGAGCGAGCAGCGAGGAAG
AGTCGTCGGAGGAGTCCGAAGAGGAAGAAAGTTCCGAGAATGAGGAGGAC
GACGAGGACGACAAGGACGACGAGGGGGAGGGGGAGAGGGAGGGGGAGGA
AGAGGAGGGCGGGGGGGAGGGGGGGGAGGAAGGTCCGGCTCTGGCGAAAG
AGACGGTTTGTGTCGAGAAGGTGGTTCTCCGGCACAAACTGCACACCGGT
TCGGCCTCTTGTTTTTGCTCTGCCTGTCGCGTGCATGAGTACGAGCGGTG
CTATACCAGGAGCAAGTACCCGGCCTGCGGCACGAAGCTCGAAGAGCAGG
TAGTAGAGGAGACAGTCATCATGGTCACTGGTGTAGATCCTGTGGTTGGG
GTGGATCCTGTGGTCGGGAGCAAAAAGATGGCGAAGAAAATTGTTTTCCG
GAAGGGGGCGACCACCTGTCAGATGGACAGGGTTACCGGTACACAGTTTG
GGGTCTCATTCTGCGGTAGCAGCAAGTAG
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