EsuBft2582_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2582_4a-0001
Unique NameEsuBft2582_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_499contigScaffold_499:698863..701417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LFJ6
ProteomeIdEsuBft2582_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length72
Hectar predicted targeting categoryother localisation
Evalue2.61e-30
EggNOG OGsKOG1823@1|root,KOG1823@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K14772,ko:K16569
GOsGO:0000166,GO:0000287,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033218,GO:0035639,GO:0036094,GO:0042277,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043295,GO:0046872,GO:0046983,GO:0048037,GO:0072341,GO:0097159,GO:0097367,GO:1900750,GO:1901265,GO:1901363,GO:1901681
Descriptionmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG categoryS
BRITEko00000,ko03009,ko03036,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2582_4aEsuBft2582_4aEctocarpus subulatus male Bft15bgeneScaffold_499 698863..701417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2582_4a-0001EsuBft2582_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_499 698901..701111 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2582_4a-0001-exonagat-exon-90292Ectocarpus subulatus male Bft15bexonScaffold_499 698863..699011 +
EsuBft2582_4a-0001-exonagat-exon-90291Ectocarpus subulatus male Bft15bexonScaffold_499 700801..700945 +
EsuBft2582_4a-0001-exonEsuBft2582_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_499 700987..701417 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2582_4a-0001-exonagat-five_prime_utr-6677Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_499 698863..698900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2582_4a-0001-cdsEsuBft2582_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_499 698901..699011 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2582_4a-0001-exonagat-three_prime_utr-10424Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_499 701112..701417 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2582_4a-0001 ID=EsuBft2582_4a-0001|Name=EsuBft2582_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=725bp|location=Sequence derived from alignment at Scaffold_499:698863..701417+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCAGCGGCCGCTTCCTAGAGGCCTTGACGGGAGTCACCATGGAGATCTCT
CGGAAGCGGGTGGAGCGAAAGCGGCAGCGTGCGGTGGAGAAGGCCACGGA
TCCGGTTGCGGCGGCAGAGCGGCGAAGGGATCGCACAGAAGCCGGGAAGA
TCCAGAAGCGGAGAAAGGTGGAAGAGTCGGCCAAGCTCCGAGGAGGGACC
AAGCGCATGCGAACGGGGGGCATAGGCATACCCGGCCCCGGCGCCTCAAG
GAACGGAGGGGGGCGCGGTGGACGAGATAGCAGTAATAGGGGTGGGGCGA
GGTGGTGGTCGGCGTGTTGGTGGGAGAGGGAAGAGGAGGAGGTGGTGGTA
GGGGCGGCGGCGGCGGACGTGGTCGACGATAAGCGACACGGTTGTCGTCG
TTTAGCTAGCACGTTGTAGCGAGGGAGCCAGTGATGAGGATTGGGTTGTC
AAGGAATGAGAAGGCGACTTGGAAAGAATGGAAGAATAAATGGCGCACCG
ATGCGGATTCGGATTCAATGCTTTCGACGTGTGATTCGCGAAGGTGCGTT
GAGTCCCACGCTGAAGTCACGCTACGGAAGTCAACCAACAGGACAGGCCC
TCTCACAGCTGTTCAGGATTTGGGTCCAACCTAACCTCTAATTACGCGAG
CATACCACAGGGTCTGACCCGCGTCGAGTCAGTCAACGATACACAGGTCA
AAGCTCGTTGTTAGTAAACTTGATC
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protein sequence of EsuBft2582_4a-0001

>EsuBft2582_4 ID=EsuBft2582_4|Name=EsuBft2582_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=126bp
MEISRKRVERKRQRAVEKATDPVAAAERRRDRTEAGKIQKRRKVEESAKL
RGGTKRMRTGGIGIPGPGASRNGGGRGGRDSSNRGGARWWSACWWEREEE
EVVVGAAAADVVDDKRHGCRRLASTL
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mRNA from alignment at Scaffold_499:698863..701417+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2582_4a-0001 ID=EsuBft2582_4a-0001|Name=EsuBft2582_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2555bp|location=Sequence derived from alignment at Scaffold_499:698863..701417+ (Ectocarpus subulatus male Bft15b)
GCAGCGGCCGCTTCCTAGAGGCCTTGACGGGAGTCACCATGGAGATCTCT
CGGAAGCGGGTGGAGCGAAAGCGGCAGCGTGCGGTGGAGAAGGCCACGGA
TCCGGTTGCGGCGGCAGAGCGGCGAAGGGATCGCACAGAAGCCGGGAAGG
TGAAATATCACAGTACAGAGTTCGGTTGAAGACGCGACGTTGTCGTTACC
TCTCCGAGAGAAACGACCACTCCAAAGGGTTTCTCCATGTATGATACCCC
TGACATACTGCAACATGAACGCCTGTAGCAAATTTGACGTTTTTGCTACT
ACCTTGTGGAGATGTGCGCGTGCCGACATGGATGTTTGATGATTCAAGAC
GCGAATTTGACGACTTGTAAGTTAGCTCTCCGAGAAAGTGACCACTCCAA
CGAGTTCCTCCAGACCTGAGACCCCAAGATGCAACAAAATTAAACACCTC
TCGCAAGTTCGACCGGTTCAAGAAACACCGTGCGCCCCCTGATGTATAAA
CAAAGTTCCTTCTTGAGACGCCTAAGATATCACGAGTTGTGGAGATGTGC
GCATGCCCACATCGATGCTCGCTTTGTCTTGTTCGCCGTGGTGCAACAGA
AGGACGATCGTGACTGACGACAGAAAGAGAGGGGAACATGCCAAGATCTT
CAATAGGACAATAAGTGTTAGGGGTGTCAAAGCGGAAAATTTCCTGTAGG
AAAAAAATTGAAAAAGCGTCCTCGGATGTTGCTGATGGAAAACCGACCAA
CAAATGAAATTGCACGGAACCGTCGGAATCTCCCGAACAGACCCTCTGAC
GCACACGCGCGAGGGCGCCGCTCGTGTGTGTGCTCTGATTATTCAACGGG
TTCTCTCTTCCGCCTGGCGCTGTCCCGCCACCGCCGATTCCTTCTCTCGT
CCAATGGCTTGTTTCTCGTGCTCGGCCTGCTGCTTCTCCTGCTCGGCCGG
CTGTCTCCGCGCCCGCTCCGACTTGAGCTCCTCGTCTTTCTCGCGCGCAA
ACTCCAGAGCCATGCTGTAACCAGCTTTGCTCTCTTCCTGACTTTTCCTA
CTTTCGGCCAGCTCCTCCTTCGTTCTTTGCAGCGCTTTCTGCGCGGCGGT
GACGCCGCCGCGCTCGATAGTTCGCCGGGTGTTGTCTGCTGCTGACGCCT
CAGCCACAGACATCCCCGTCCTCTCTTCAAACTTAGTTTTGTTTTGATTC
AGCTTTCGCGCAGCGCGCCTCCTGCCGCCGAACGGCGCGGATCTCGATTT
TTTTTTTGGGAGGGTCTGCTGGTGTGGGCGCTGCAGCCCTACTGGAGGGG
CCGTTTTCAGACATGTAGATCTCGTGGTTGGCTGATGCGATTCGGATGCG
GTTTGTTGTGTGGTATAGCTGTAAACCCAAGGTAGAGGGCTGTAAGGTAG
CTTTCACGAGAGGAGCAAAGGTTGCCTTGGGCGCCTTGGGGGTGGAGCAA
AGAGTCCAAAAAAACATGTTTTTTGGTGTTCTTCGTCCGCCCTTGTACAT
AAAGAAGACCAACCTTACAGTCACCTTTATTGGACCTGTGTCCAGGTGTG
TGTAACGCATGAAGAGCCATGCTGATGTCTGGACGCCGAGCTGCCTGCAC
AAACAAATTGACTTGATGCATAGTTTATTCAGTATTAACAGCGGGATTCT
CAAAAACCAAAAAAAGAATCAAATCCGCGTGCCCCCCTCAAATTCCGCCG
CTTTGACACCCCTAACTGTGTGGTAGCGGAGAGCAGTCGGCGCCACATTC
TTGGGCAAGTAAATTGGACGTATGAATGCCTCTCTGCTCCTGTGCTCGAG
CTCGCTGCGAGTCATCGGCATCCTTCACCTCTCTGGCTCGTATCTCAAGA
CTGGACCCACAAGGCCAACTTTCTGATCACCACACGTGCCTCTCTTGCCC
ACTCGCCCCGCCGTCCCTCCGAACCAACTTCTTGGTAGATCCAGAAGCGG
AGAAAGGTGGAAGAGTCGGCCAAGCTCCGAGGAGGGACCAAGCGCATGCG
AACGGGGGGCATAGGCATACCCGGCCCCGGCGCCTCAAGGAACGGAGGGG
GGCGCGGTGGACGAGATAGCAGTAATAGGGGTGGTATGAGGGAGGGGCGG
GGTGGCGGCAGAGGCACGGGGCAGGGGCGAGGTGGTGGTCGGCGTGTTGG
TGGGAGAGGGAAGAGGAGGAGGTGGTGGTAGGGGCGGCGGCGGCGGACGT
GGTCGACGATAAGCGACACGGTTGTCGTCGTTTAGCTAGCACGTTGTAGC
GAGGGAGCCAGTGATGAGGATTGGGTTGTCAAGGAATGAGAAGGCGACTT
GGAAAGAATGGAAGAATAAATGGCGCACCGATGCGGATTCGGATTCAATG
CTTTCGACGTGTGATTCGCGAAGGTGCGTTGAGTCCCACGCTGAAGTCAC
GCTACGGAAGTCAACCAACAGGACAGGCCCTCTCACAGCTGTTCAGGATT
TGGGTCCAACCTAACCTCTAATTACGCGAGCATACCACAGGGTCTGACCC
GCGTCGAGTCAGTCAACGATACACAGGTCAAAGCTCGTTGTTAGTAAACT
TGATC
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Coding sequence (CDS) from alignment at Scaffold_499:698863..701417+

>EsuBft2582_4a-0001 ID=EsuBft2582_4a-0001|Name=EsuBft2582_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=381bp|location=Sequence derived from alignment at Scaffold_499:698863..701417+ (Ectocarpus subulatus male Bft15b)
ATGGAGATCTCTCGGAAGCGGGTGGAGCGAAAGCGGCAGCGTGCGGTGGA
GAAGGCCACGGATCCGGTTGCGGCGGCAGAGCGGCGAAGGGATCGCACAG
AAGCCGGGAAGATCCAGAAGCGGAGAAAGGTGGAAGAGTCGGCCAAGCTC
CGAGGAGGGACCAAGCGCATGCGAACGGGGGGCATAGGCATACCCGGCCC
CGGCGCCTCAAGGAACGGAGGGGGGCGCGGTGGACGAGATAGCAGTAATA
GGGGTGGGGCGAGGTGGTGGTCGGCGTGTTGGTGGGAGAGGGAAGAGGAG
GAGGTGGTGGTAGGGGCGGCGGCGGCGGACGTGGTCGACGATAAGCGACA
CGGTTGTCGTCGTTTAGCTAGCACGTTGTAG
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