EsuBft2582_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2582_3a-0001
Unique Name	EsuBft2582_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_499	contig	Scaffold_499:694362..698861 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LFJ6
ProteomeId	EsuBft2582_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	5
Max annot lvl	2759\|Eukaryota
Length	142
Hectar predicted targeting category	other localisation
Evalue	1.06e-74
EggNOG OGs	KOG1823@1\|root,KOG1823@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K14772,ko:K16569
GOs	GO:0000166,GO:0000287,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033218,GO:0035639,GO:0036094,GO:0042277,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043295,GO:0046872,GO:0046983,GO:0048037,GO:0072341,GO:0097159,GO:0097367,GO:1900750,GO:1901265,GO:1901363,GO:1901681
Description	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG category	S
BRITE	ko00000,ko03009,ko03036,ko04147,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2582_3a	EsuBft2582_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_499 694362..698861 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2582_3a-0001	EsuBft2582_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_499 694362..698413 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2582_3a-0001-exon	agat-exon-90288	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 694362..694534 +
EsuBft2582_3a-0001-exon	agat-exon-90289	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 694757..694828 +
EsuBft2582_3a-0001-exon	EsuBft2582_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 695350..695419 +
EsuBft2582_3a-0001-exon	agat-exon-90287	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 696513..697046 +
EsuBft2582_3a-0001-exon	agat-exon-90286	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 697955..698498 +
EsuBft2582_3a-0001-exon	agat-exon-90290	Ectocarpus subulatus male Bft15b	exon	Scaffold_499 698827..698861 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2582_3a-0001-cds	EsuBft2582_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_499 694362..694534 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2582_3a-0001-exon	agat-three_prime_utr-10422	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_499 698414..698498 +
EsuBft2582_3a-0001-exon	agat-three_prime_utr-10423	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_499 698827..698861 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_499:694362..698861+
coding sequence from alignment at Scaffold_499:694362..698861+

spliced messenger RNA

>EsuBft2582_3a-0001 ID=EsuBft2582_3a-0001|Name=EsuBft2582_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1428bp|location=Sequence derived from alignment at Scaffold_499:694362..698861+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGAGGCTAAGGGGCAGAAGGCCTACGACTCGTTCGAGATCGCGGC
GAGGACCTTGCTCTTCCGGCCGACATTCACCGTGCTAGCGCCGGAGGACG
CGGATTCGGTGTCGTCGGTGCACGCCCTGGTGGGCCCCGTGCTTTCCCTC
CTGGAGGGGTGCGAGAACGCCAGGTCGGTGGGTAAGGCTAACGAGGCCCT
CACGAGGATCGGGATGGGCCTGGCGGCTAACCCCAGCGCGACGAGCCGCG
AGAAAGAAGGCCAAAAGGAGCTCCGCTGGCGGCGGGGCTTCATCCTCCGC
CCGGCAGGCATGTGGATCATCAGCGGGGTCTCCTACGAGCACGCCGAGGG
GCGCCTCGCGGCCCTCAACCTGTGCTCCCAGCTCCTCCGACGGCTCCCGG
AGCCCAACCTCGACCAGCTCTCCAGCGTCTTCTGCCTCGGCGGCGGCGGG
GGCGGCGGGGGCGGAGGTGGCGGCGATGAAGGTGATGGGCTGTTCGATCG
GCTACTGGAGGCGTTGCTGTACCAGGATGCCTGGGTGCGCCTCGCGGCCG
CCCGCGTTTGGGGATCGTTCTTCTCGAAGAGGGATCCAGAGCCCCTGACC
GTAACCGCCGGCGGCAGCGGCGGTGGCAATGGCGGTGGCGGTGGCCAAGT
AGAGAGACGCCAGACACCGAAGCAAGTCCAAGGTGACTCAACACCCGGGA
AGTTGAAAGCGAAATGCCGGGGCCAGCGGCGGGGTGATGTTGCCGGCGAG
CGAGCCGGGGGAGACGACGGGGGACAGGACTTCCTTCCAAGGAGGCGTGT
CCTGTTCCGCCTGTGCCAGAACCTGTGCTCTCAGCTCAACAGGTCGCAGT
GCGTCAAGAACCTGGTGTTTATTGGCCGTGCGATGCACCTCAACCCGGAG
CTATGCTTCGCTGAGGACGCCGTCGAAGAAGAAGAAGACGCCTCTGGGAC
GGAAAGCCCGGCGATGGACGACGCAAGCGACAGCGAGGGGGTTGACGATG
ACGGCGGAGAAGCCGCCGCCGTCGCCGATTCTGCCGATTCTTCTCTCGCC
GGCGGTGGTAAGGCTACCACGTCCGGTGCCGCAGACCCGTTGAGATGGGT
GTTCAAGCGCACGTCCCACATGGTGGTGCCCAAAGGAGAGGCACGGAGGC
GAGCGGTGTTCAGCTGGTTCCTGGCGATGGTGGCCGTTCACGAGCCCGCC
GTTTCCGTGGCCCACCTGGAGCTCATGCTTCTACCTGAAGCTCATGCTTC
TGCCGCTGCGGAGAGCGGTGTTAGACGCCGAGGCGGGCGGGGTGGAGCAC
AAAGCTAGGGGGTCTCATGCCGGCGGTAGCGGTGGTGGGGGAGAGGGCAC
AGCTGCTGAGAAGGAGCAAACTGCTGCGGAACTAGCGACGGAGGTGATGG
AACTCCTGGAGGAGAAGGTTGGCAGGTT

protein sequence of EsuBft2582_3a-0001

>EsuBft2582_3 ID=EsuBft2582_3|Name=EsuBft2582_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=435bp
MKEAKGQKAYDSFEIAARTLLFRPTFTVLAPEDADSVSSVHALVGPVLSL
LEGCENARSVGKANEALTRIGMGLAANPSATSREKEGQKELRWRRGFILR
PAGMWIISGVSYEHAEGRLAALNLCSQLLRRLPEPNLDQLSSVFCLGGGG
GGGGGGGGDEGDGLFDRLLEALLYQDAWVRLAAARVWGSFFSKRDPEPLT
VTAGGSGGGNGGGGGQVERRQTPKQVQGDSTPGKLKAKCRGQRRGDVAGE
RAGGDDGGQDFLPRRRVLFRLCQNLCSQLNRSQCVKNLVFIGRAMHLNPE
LCFAEDAVEEEEDASGTESPAMDDASDSEGVDDDGGEAAAVADSADSSLA
GGGKATTSGAADPLRWVFKRTSHMVVPKGEARRRAVFSWFLAMVAVHEPA
VSVAHLELMLLPEAHASAAAESGVRRRGGRGGAQS

mRNA from alignment at Scaffold_499:694362..698861+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2582_3a-0001 ID=EsuBft2582_3a-0001|Name=EsuBft2582_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4500bp|location=Sequence derived from alignment at Scaffold_499:694362..698861+ (Ectocarpus subulatus male Bft15b)
ATGAAGGAGGCTAAGGGGCAGAAGGCCTACGACTCGTTCGAGATCGCGGC
GAGGACCTTGCTCTTCCGGCCGACATTCACCGTGCTAGCGCCGGAGGACG
CGGATTCGGTGTCGTCGGTGCACGCCCTGGTGGGCCCCGTGCTTTCCCTC
CTGGAGGGGTGCGAGAACGCCAGGTGTGTGTTTTTTATTGTTGGCATCGA
CCGCGCTACAAAACCTGCCGACCGATGAAAAGACGTCAGTGCCAACGGGG
AGAATCAAGGTCCCTGGTTGTGCAGTCTTTGTATGTACCTACGAAGCCGC
TCGTTTTCTGCGGCTTGCATCCATCTATCACCCATTTTCTGGACCGATCG
CTCACGGCCTTCTTTTGCTTGCGGTCAAGGGCGTCTTCGTTTCAGGTCGG
TGGGTAAGGCTAACGAGGCCCTCACGAGGATCGGGATGGGCCTGGCGGCT
AACCCCAGCGCGACGAGGTCCAAGATGCTCCTCTAGGTTCACGCGACCGT
GGCGCCGTTCCTTCTCCCCCAGGTGACATCATCACCCAAGTGACGTCGTC
ACCCTGGTCACGTCATCACCCTAGTGACGCCCCGAGCATATGCTTATCTC
CATCACCACCGTTACCCTTAGTACATACACCTGCAAACGCTCGTACCCGC
TTGAAGGACACTCATTGTTTGTTGTCTAACATAGTTGCCTTTGCGGCGGA
AGGTGCTTTCAAATACATCGGTATTCTTGGAGTGGGACGTGTTGCTAAGT
GTTACACCCTGCTGCTGCTGATGTTTATTCTTTTCTAGCTTTGTCGAGCT
TGCTTCGATTTCATCCTTGCTGTACGCCGCCCCCGCCCCCTTGTTATCCC
GTCGGCTGCCAATCTTCTTTTTCTTTTTATCGGGGGACCTTTGGAGACAG
ACATCGGAGGAGGAGGACGACGACGAGGTGGAAGAGGGAGGCAGCGAAGA
CAGCAGCGACAGCAACTGTGGTGCGGGGGGGTCGACAGCCGCGAGAAAGA
AGGCCAAAAGGAGCTCCGCTGGCGGCGGGGCTTCATCCTCCGCCCGGCAG
GCATGTGGGTAGGTTTTATTTTCTGCCGGCCCCCCGCTCCTTCACCCGAA
GTCGTGTGCTTGCCCCGCTCGGCGCTTGTTTTGTTTGATCCTTCGCCTCG
ATTTTTGGCTTGGTATAAGAGGAACCAATTTGATGAAACGTCCTAACTGT
TGGTATCACAGCAGTCAGTCACAGCAGTCAGTGTTGATGAATCGCCCTAT
TTGTTGGTATCACAGCGGTCAGTGTTAGTCTTGATGAATCCTCCTAAGTC
TTGGTACAATCATTGCAGTCAGTGTTGACGAGCCCTCCTCAACCTCGCTT
TGAAATCGGAGCGCCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCTGCTCCAACTTGTCCCGACCAATCA
GATCATCAGCGGGGTCTCCTACGAGCACGCCGAGGGGCGCCTCGCGGCCC
TCAACCTGTGCTCCCAGCTCCTCCGACGGCTCCCGGAGCCCAACCTCGAC
CAGCTCTCCAGCGTCTTCTGCCTCGGCGGCGGCGGGGGCGGCGGGGGCGG
AGGTGGCGGCGATGAAGGTGATGGGCTGTTCGATCGGCTACTGGAGGCGT
TGCTGTACCAGGATGCCTGGGTGCGCCTCGCGGCCGCCCGCGTTTGGGGA
TCGTTCTTCTCGAAGAGGGATCCAGAGCCCCTGACCGTAACCGCCGGCGG
CAGCGGCGGTGGCAATGGCGGTGGCGGTGGCCAAGTAGAGAGACGCCAGA
CACCGAAGCAAGTCCAAGGTGACTCAACACCCGGGAAGTTGAAAGCGAAA
TGCCGGGGCCAGCGGCGGGGTGATGTTGCCGGCGAGCGAGCCGGGGGAGA
CGACGGGGGACAGGACTTCCTTCCAAGGAGGCGTGTCCTGTTCCGCCTGT
GCCAGAACCTGTGCTCTCAGCTCAACAGGTCGCAGGTGCGCACCATAGGG
AGGCAGTGGATGATAGTGCTGCTGATATTGCGGGGGGAGGGCGTGAACGC
TTCGTTATCGTAGGCATGTATGTGTGCGCTAAGCTGTATCTTGCTGCCCC
CCCCCTCCCTCCCCCGCTCCACCCGGTTTTTGTTGAGTTTGTGTCTGCGT
TCGGTGGAGCAGACGCTGGGGTGCTTATGGAAGTAGTCGCCTATATCTAC
AACACTTTTGAGAAAGTACATTTGGAGATCAAGGAGAGATAGGGGGCACA
GAGAGAACACACCCCGTGTGAGATGATTTTGACCCGGAGCTCCTCAGAGG
GGTTAGTCTGGTGTGGACCATTCCCGTGATGCTCAAAGTTCTCCCATATT
CTCAAAATAGAGTCGTCGTGTGCAAAGGACGTAAGCAATAGTTTTTTGGG
CAAGGAAATTCCTCTCGGTTGCTTCATTTTCATCTCTCAGCACCCGGTCG
CCCCGGTGGTCTAGTTGGTGTCCTCTCTCGAAACCTTCTAGAGGTCAGGT
CAGGGATTCGAATCCCGGCATAAGCGAGCTTTTCTTGCAAAGTGAGTTTT
TCTCCCGCTTCCGCTCCTGGCCAAGTGGATAGTGCTAGTTCTTGTGTACA
CAGAGAGAAGAGAGTGCTGAACTCTTCTCGCATTAACAATCGAAGGCAAC
GTATCGCAGGAGGGGAGGGTAGAAAGAGGCCCTTCCGTGTGACCACGGGT
TGGAGTAACGGCACTAGTGCTGTGAGCGCTGATTTGAAGCGAAAAAAAAA
AAAATCCCCAACTCTTTTTTGTTTCGTTTTATGAAGGGATGCCAATACCT
AGAGTTTTTCAGGAGGAAATTTCCTCTCGCTTGGTTCCTTTTCATCTCTC
AACTCCCAACCATCCACAGGTGGACCCGAAACTGACGGAGCAGTGCGTCA
AGAACCTGGTGTTTATTGGCCGTGCGATGCACCTCAACCCGGAGCTATGC
TTCGCTGAGGACGCCGTCGAAGAAGAAGAAGACGCCTCTGGGACGGAAAG
CCCGGCGATGGACGACGCAAGCGACAGCGAGGGGGTTGACGATGACGGCG
GAGAAGCCGCCGCCGTCGCCGATTCTGCCGATTCTTCTCTCGCCGGCGGT
GGTAAGGCTACCACGTCCGGTGCCGCAGACCCGTTGAGATGGGTGTTCAA
GCGCACGTCCCACATGGTGGTGCCCAAAGGAGAGGCACGGAGGCGAGCGG
TGTTCAGCTGGTTCCTGGCGATGGTGGCCGTTCACGAGCCCGCCGTTTCC
GTGGCCCACCTGGAGCTCATGCTTCTACCTGAAGCTCATGCTTCTGCCGC
TGCGGAGAGCGGTGTTAGACGCCGAGGCGGGCGGGGTGGAGCACAAAGCT
AGGGGGTCTCATGCCGGCGGTAGCGGTGGTGGGGGAGAGGGCACAGCTGC
TGAGAAGGAGCAAACTGCTGCGGAACTAGCGACGGAGGTGAGTGGAGAGT
GGCGCGCAAAGGAGGAGGTACCAGAGTGTGGTTGTCAGAAGGGGCAGGCA
GCTGTTGCATTGCCACTATCCGATCACCAGAGCGTCTTTCGAAAGATGCA
GCTTTATTTGCGTTGTCACTGCCGGGTGTTACAAGCGACGATGATTGTTA
TTTTTGTTCCCCCCTCCAACGTGTGGTTTCTCCCGTTTGGCCGATCCGCC
GCTGCCCCCCGTTTCGTCCTCTCGACGACGCGTTGGTCAATCCAACCGCT
ACGGCATGCAAAACATGAGAGTGCGCCACCCCGCCCCGCCCCCCGTTTTG
CCGCCCCTCCCCAAGGTGATGGAACTCCTGGAGGAGAAGGTTGGCAGGTT

Coding sequence (CDS) from alignment at Scaffold_499:694362..698861+

>EsuBft2582_3a-0001 ID=EsuBft2582_3a-0001|Name=EsuBft2582_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1308bp|location=Sequence derived from alignment at Scaffold_499:694362..698861+ (Ectocarpus subulatus male Bft15b)
ATGAAGGAGGCTAAGGGGCAGAAGGCCTACGACTCGTTCGAGATCGCGGC
GAGGACCTTGCTCTTCCGGCCGACATTCACCGTGCTAGCGCCGGAGGACG
CGGATTCGGTGTCGTCGGTGCACGCCCTGGTGGGCCCCGTGCTTTCCCTC
CTGGAGGGGTGCGAGAACGCCAGGTCGGTGGGTAAGGCTAACGAGGCCCT
CACGAGGATCGGGATGGGCCTGGCGGCTAACCCCAGCGCGACGAGCCGCG
AGAAAGAAGGCCAAAAGGAGCTCCGCTGGCGGCGGGGCTTCATCCTCCGC
CCGGCAGGCATGTGGATCATCAGCGGGGTCTCCTACGAGCACGCCGAGGG
GCGCCTCGCGGCCCTCAACCTGTGCTCCCAGCTCCTCCGACGGCTCCCGG
AGCCCAACCTCGACCAGCTCTCCAGCGTCTTCTGCCTCGGCGGCGGCGGG
GGCGGCGGGGGCGGAGGTGGCGGCGATGAAGGTGATGGGCTGTTCGATCG
GCTACTGGAGGCGTTGCTGTACCAGGATGCCTGGGTGCGCCTCGCGGCCG
CCCGCGTTTGGGGATCGTTCTTCTCGAAGAGGGATCCAGAGCCCCTGACC
GTAACCGCCGGCGGCAGCGGCGGTGGCAATGGCGGTGGCGGTGGCCAAGT
AGAGAGACGCCAGACACCGAAGCAAGTCCAAGGTGACTCAACACCCGGGA
AGTTGAAAGCGAAATGCCGGGGCCAGCGGCGGGGTGATGTTGCCGGCGAG
CGAGCCGGGGGAGACGACGGGGGACAGGACTTCCTTCCAAGGAGGCGTGT
CCTGTTCCGCCTGTGCCAGAACCTGTGCTCTCAGCTCAACAGGTCGCAGT
GCGTCAAGAACCTGGTGTTTATTGGCCGTGCGATGCACCTCAACCCGGAG
CTATGCTTCGCTGAGGACGCCGTCGAAGAAGAAGAAGACGCCTCTGGGAC
GGAAAGCCCGGCGATGGACGACGCAAGCGACAGCGAGGGGGTTGACGATG
ACGGCGGAGAAGCCGCCGCCGTCGCCGATTCTGCCGATTCTTCTCTCGCC
GGCGGTGGTAAGGCTACCACGTCCGGTGCCGCAGACCCGTTGAGATGGGT
GTTCAAGCGCACGTCCCACATGGTGGTGCCCAAAGGAGAGGCACGGAGGC
GAGCGGTGTTCAGCTGGTTCCTGGCGATGGTGGCCGTTCACGAGCCCGCC
GTTTCCGTGGCCCACCTGGAGCTCATGCTTCTACCTGAAGCTCATGCTTC
TGCCGCTGCGGAGAGCGGTGTTAGACGCCGAGGCGGGCGGGGTGGAGCAC
AAAGCTAG