EsuBft2554_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2554_2a-0001
Unique NameEsuBft2554_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_389contigScaffold_389:535100..535637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2554_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length29
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2554_2aEsuBft2554_2aEctocarpus subulatus male Bft15bgeneScaffold_389 535100..535637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2554_2a-0001EsuBft2554_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_389 535477..535637 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2554_2a-0001-exonagat-exon-49869Ectocarpus subulatus male Bft15bexonScaffold_389 535100..535208 -
EsuBft2554_2a-0001-exonEsuBft2554_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_389 535387..535558 -
EsuBft2554_2a-0001-exonagat-exon-49868Ectocarpus subulatus male Bft15bexonScaffold_389 535621..535637 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2554_2a-0001-exonagat-three_prime_utr-10312Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_389 535100..535208 -
EsuBft2554_2a-0001-exonagat-three_prime_utr-10313Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_389 535387..535476 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2554_2a-0001-cdsEsuBft2554_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_389 535477..535558 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2554_2a-0001 ID=EsuBft2554_2a-0001|Name=EsuBft2554_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=298bp|location=Sequence derived from alignment at Scaffold_389:535100..535637- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTGGTCAAGCGACGGCAGGTTCATCTCTACCACGCATGCTCGCT
GAGCGGCGAAGGTGAAGCTGGCAGCTCTCACGTTTGCGGGGTAGACTAGT
GAGTGACGGGCAGGGAAGGGTCGGATCATGGGGCTGGTGGTTGGCGCCAC
AGATTCCGCCAGGCTACGGGCGTGTTAGAGCCGAGAGAGGTGGCGGTGCG
GTCCGTGCGGGCGGAACAGGGTGATGGCTACAGCAGTTGGGCGATATGCC
GGCTCACTGAAGGGGCTCAACAGCAACCCCGATGTTGTTGTTGTTGTT
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protein sequence of EsuBft2554_2a-0001

>EsuBft2554_2 ID=EsuBft2554_2|Name=EsuBft2554_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=32bp
MVVVKRRQVHLYHACSLSGEGEAGSSHVCGVD
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mRNA from alignment at Scaffold_389:535100..535637-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2554_2a-0001 ID=EsuBft2554_2a-0001|Name=EsuBft2554_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=538bp|location=Sequence derived from alignment at Scaffold_389:535100..535637- (Ectocarpus subulatus male Bft15b)
ATGGTGGTGGTCAAGCGGTATGTGTGCGTTGAAATAAGGTGGTCGGAATA
GTCTCGTCGCTCCCGCCCGCCGGCATCAGACGGCAGGTTCATCTCTACCA
CGCATGCTCGCTGAGCGGCGAAGGTGAAGCTGGCAGCTCTCACGTTTGCG
GGGTAGACTAGTGAGTGACGGGCAGGGAAGGGTCGGATCATGGGGCTGGT
GGTTGGCGCCACAGATTCCGCCAGGCTACGGGCGTGTTAGAGCCGAGAGA
GGTGAGGTTTGAATATATTGGTGTGTGTACGGCAGTTAGTTACCTTGGAT
CGCTTGTTGCTACTCTCCCGCGTTCGCCTTCGCCGGATGTATGTAGTCTA
CTTCTCTATGATTTTCCCCTCTCGGCGCTGACTTGACGGGCTCTCCTACC
CCCCGCTTGCTCGCCCTGCGCAAAAAAAGGTGGCGGTGCGGTCCGTGCGG
GCGGAACAGGGTGATGGCTACAGCAGTTGGGCGATATGCCGGCTCACTGA
AGGGGCTCAACAGCAACCCCGATGTTGTTGTTGTTGTT
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Coding sequence (CDS) from alignment at Scaffold_389:535100..535637-

>EsuBft2554_2a-0001 ID=EsuBft2554_2a-0001|Name=EsuBft2554_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=99bp|location=Sequence derived from alignment at Scaffold_389:535100..535637- (Ectocarpus subulatus male Bft15b)
ATGGTGGTGGTCAAGCGACGGCAGGTTCATCTCTACCACGCATGCTCGCT
GAGCGGCGAAGGTGAAGCTGGCAGCTCTCACGTTTGCGGGGTAGACTAG
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