EsuBft2541_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2541_3a-0001
Unique NameEsuBft2541_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_390contigScaffold_390:454261..455294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog164328.Phyra87194
ProteomeIdEsuBft2541_3
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon3
Max annot lvl164328.Phyra87194|-
Length829
Hectar predicted targeting categoryother localisation
Evalue6.82e-29
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3Q8Z1@4776|Peronosporales
Date last modified2016-06-13
Date creation2016-06-13
Descriptiontransposition, RNA-mediated
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2541_3aEsuBft2541_3aEctocarpus subulatus male Bft15bgeneScaffold_390 454261..455294 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2541_3a-0001-exonagat-exon-13603Ectocarpus subulatus male Bft15bexonScaffold_390 454261..454331 -
EsuBft2541_3a-0001-exonagat-exon-13604Ectocarpus subulatus male Bft15bexonScaffold_390 454441..454708 -
EsuBft2541_3a-0001-exonEsuBft2541_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_390 454805..455294 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2541_3a-0001-cdsEsuBft2541_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_390 454261..454331 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2541_3a-0001-exonagat-five_prime_utr-6572Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_390 455222..455294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2541_3a-0001EsuBft2541_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_390 454261..455221 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2541_3a-0001 ID=EsuBft2541_3a-0001|Name=EsuBft2541_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=829bp|location=Sequence derived from alignment at Scaffold_390:454261..455294- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCTTCCCTTAACAAGAAGTTTCCGGTGAAAGATCTGGGGGAGTGTACCT
GGTACGACGGGTGTGCTATCGCCATGGATGTAGAAAATGGCATCACCAAG
CTGTCCCAGACAGCATACATTGAGAGTATGCTGAAGCGGTTTGATGTGAC
CACGACCGCTTTCACCCCTGCTGCCACCGATGCCGACCTAGGGCCGAAGA
GAGATGACGAGCCCGCGGTGGATAAGCCTGTGAGGGAGGCGATCGGATGC
CTGATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCCTCTGAACAA
GCTCCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGAACGCGCTTG
TGCGGATCATGTCCTACCTGAACTTCACGAAGGACTTCGGCATCACCTAC
GTACGGGGGTCAGGACTAGACCTAAGCGTGTTTGTCGATGCCAGCTACGC
TGACAACGAAGTAGACAGGCGTTCTACGACCGGGCTAGCTGGCGTGAAGG
ATGCGTTGTTTGTGCATGGCGTTCTGTCTTTCATAGCGCCCGAGGCGAGT
GGGGCGAAGATCAAGGTCCTTGAGGACAACAAGGGGGCTCTGGCCTTAAT
CGAGAACTCGTTCAGCTCAGCGAGGAGCAAGGACATCGATGTGCGGTTCC
ATTTCATTCGCGAGCTTTTCAAGTCGGGCAAGATCACTGCAGAGTATGTT
CCAACTGGAGAGCAGCACGACGACATGCTGACCAAGGTCCTTCGCAGAGA
GAAGTTAGGAAGCGTTGTGCCGGCGCGTCACACGAGGCTGGAGCCTAGAA
ACGCCGAGAGCGTTGCTTCGGGTGTGTAA
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protein sequence of EsuBft2541_3a-0001

>EsuBft2541_3 ID=EsuBft2541_3|Name=EsuBft2541_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=251bp
MDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVD
KPVREAIGCLMWTKLTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLN
FTKDFGITYVRGSGLDLSVFVDASYADNEVDRRSTTGLAGVKDALFVHGV
LSFIAPEASGAKIKVLEDNKGALALIENSFSSARSKDIDVRFHFIRELFK
SGKITAEYVPTGEQHDDMLTKVLRREKLGSVVPARHTRLEPRNAESVASG
V
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mRNA from alignment at Scaffold_390:454261..455294-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2541_3a-0001 ID=EsuBft2541_3a-0001|Name=EsuBft2541_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1034bp|location=Sequence derived from alignment at Scaffold_390:454261..455294- (Ectocarpus subulatus male Bft15b)
CGCTTCCCTTAACAAGAAGTTTCCGGTGAAAGATCTGGGGGAGTGTACCT
GGTACGACGGGTGTGCTATCGCCATGGATGTAGAAAATGGCATCACCAAG
CTGTCCCAGACAGCATACATTGAGAGTATGCTGAAGCGGTTTGATGTGAC
CACGACCGCTTTCACCCCTGCTGCCACCGATGCCGACCTAGGGCCGAAGA
GAGATGACGAGCCCGCGGTGGATAAGCCTGTGAGGGAGGCGATCGGATGC
CTGATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCCTCTGAACAA
GCTCCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGAACGCGCTTG
TGCGGATCATGTCCTACCTGAACTTCACGAAGGACTTCGGCATCACCTAC
GTACGGGGGTCAGGACTAGACCTAAGCGTGTTTGTCGATGCCAGCTACGC
TGACAACGAAGTAGACAGGCGTTCTACGACCGGGCTAGCTGTGACCGTAG
GTGGTACCGTAGTATGTGCATCCACCAAGACGCAGCCAGTGACGGCTCAG
TCGACCTCGGAAGCAGAGTACATGGCAGCCGGGGAGGGCGTGAAGGATGC
GTTGTTTGTGCATGGCGTTCTGTCTTTCATAGCGCCCGAGGCGAGTGGGG
CGAAGATCAAGGTCCTTGAGGACAACAAGGGGGCTCTGGCCTTAATCGAG
AACTCGTTCAGCTCAGCGAGGAGCAAGGACATCGATGTGCGGTTCCATTT
CATTCGCGAGCTTTTCAAGTCGGGCAAGATCACTGCAGAGTATGTTCCAA
CTGGAGAGCAGCACGACGACATGCTGACCAAGGTCCTTCGCAGAGAGAAG
TTAGGTTACCATCGGAAGGCTCTGATGAACCTACCGATGTGGTGTTCTCT
TGTTCTGTTTGGTTTATGTGGTGGTTTTAGCACTTGGCATGTATGACCAT
GTACGTCACGCAGGAAGCGTTGTGCCGGCGCGTCACACGAGGCTGGAGCC
TAGAAACGCCGAGAGCGTTGCTTCGGGTGTGTAA
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Coding sequence (CDS) from alignment at Scaffold_390:454261..455294-

>EsuBft2541_3a-0001 ID=EsuBft2541_3a-0001|Name=EsuBft2541_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=756bp|location=Sequence derived from alignment at Scaffold_390:454261..455294- (Ectocarpus subulatus male Bft15b)
ATGGATGTAGAAAATGGCATCACCAAGCTGTCCCAGACAGCATACATTGA
GAGTATGCTGAAGCGGTTTGATGTGACCACGACCGCTTTCACCCCTGCTG
CCACCGATGCCGACCTAGGGCCGAAGAGAGATGACGAGCCCGCGGTGGAT
AAGCCTGTGAGGGAGGCGATCGGATGCCTGATGTGGACGAAGCTGACGAG
GCCAGACATCGCCCTGCCTCTGAACAAGCTCCAGAAGATCGCCCACTCAC
CCACCGGGAGGATATGGAACGCGCTTGTGCGGATCATGTCCTACCTGAAC
TTCACGAAGGACTTCGGCATCACCTACGTACGGGGGTCAGGACTAGACCT
AAGCGTGTTTGTCGATGCCAGCTACGCTGACAACGAAGTAGACAGGCGTT
CTACGACCGGGCTAGCTGGCGTGAAGGATGCGTTGTTTGTGCATGGCGTT
CTGTCTTTCATAGCGCCCGAGGCGAGTGGGGCGAAGATCAAGGTCCTTGA
GGACAACAAGGGGGCTCTGGCCTTAATCGAGAACTCGTTCAGCTCAGCGA
GGAGCAAGGACATCGATGTGCGGTTCCATTTCATTCGCGAGCTTTTCAAG
TCGGGCAAGATCACTGCAGAGTATGTTCCAACTGGAGAGCAGCACGACGA
CATGCTGACCAAGGTCCTTCGCAGAGAGAAGTTAGGAAGCGTTGTGCCGG
CGCGTCACACGAGGCTGGAGCCTAGAAACGCCGAGAGCGTTGCTTCGGGT
GTGTAA
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