Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft2539_2 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 294 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2539_2a-0001 ID=EsuBft2539_2a-0001|Name=EsuBft2539_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2946bp|location=Sequence derived from alignment at Scaffold_358:7103..11460+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CATCCTGTTTCACCATGAGCAACGACGACTCATGCCTTGTTCTCCACGGC
AATCGACTCCGCTTAGTCGAATTACATACAGAGGACACCACTCTCGAAGT
CCTCAGCTCTAAACTTCAACATCTACGGCCGTGCCGACTCGGGCCTGGCC
GTGGCTCGTTGCAGTCTCATGCTTGTAGACCGCATAATTCACGTCCGCGG
GGAAAAGCGAGATTAGTAAGGCAGCACCGGAAGAAGCACAACCGCTGGAT
GCTGCTAACCTCCTGGCTGTTAAAGAAGGGTGCCACCAAGGCAGCTGGCA
GTAAGTTGTCCTCTGTAGTTGCTGATGAAGATCAGCTCCACGAACAGGGT
AGAGAGCATGCTGAAGCCATTCAAGAACGAGCAACAAAGCGCGGCAACCA
ACAGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCGGGGAAGGGGAAGCGCAAGGGGGCGGACGCAGCTCTCTCT
GACCCTCTAGCATTGGCTTACGATGGTGGACGAGAAGCGGGGCTACCTCA
GAGGCTTCACGCGAGGGACAGACCAGGCAGCAGCTAAGGAGGCGGCGGTC
AACGCGGCGAACACTCGCGCGCTCCGTGCCACGCTCCAAGCGCTGAAGCG
GCACAGCAACAGCTCGACAGGGTGGACCGCGTACACGACAGCGCTCGCCA
CAGCAGCGGGAGGGGAGGGAGCACACGTGGCCTGACCCCAACCTGTGCCA
CCCTGGCAACCGGTACAAGCCCGCTGAGCCTGGTGGAGTGAGCTTTGCCG
AGCGAGCCAAGAGTCTCGGCATTCGGTACGAGACTTTCAGCGACGCACGT
GTGCGGATGCACAACACGAACCACGACATCGCCCCCAGGGACGCTGTGAG
TGACGGGTGCTACGTGTATAACGAGCGCAAGACACGGAGTGACGTGACGA
ATCCCGAGGTAATGGCTCTCGCCAAGGCTTTTTGGCACTCCGACGACGTT
TCCCGTGCAACAGGAAATTCAGGCAAGGACATGTACAAGGAGTCTAACAA
GAGAGACGCACCCTCTCACCCTCGGAGACAGCTCATGCACAAGGGAGACA
GAGTGTGGAGGATGTTCCTCGAGAGCCGGCGGTACCTGGCACTCAAGGGA
AGACTACTTGAGCAGGACAGCAGCTTCACCGACCCTGGCAGGACGACGTT
TCTGTCGACGCGGTGTGGTTGGTTAGTGGAGCCAATAGTGTCGCAATATG
CGTGCGAGACCCACACGCAGCAGGTGTTGTATCTCGAGTCCCTTTCCTTC
TTGATGGGGTCGATACACCAAAACTGCGACTGCAAGTGTGACTGGTGTGA
CGGGCTTGGTTGTAAGAAGTGGTCTGTCATGTGCCGGGACCTGAGCAAGT
TTTCTGACGCTTCCGCATGCGAGAAGGTTTACCTGCTGGAGGGGGATTCC
GACGGAGGGTGCGGAAACCGGCATGCGCTTCGAATATGTGCTCAGAGTGC
GGGTTCGGAAAGCCTGGAGGTATTCCGACCAACTGCACCGCTCTGGCGAA
ACACAAAGAGCGAGTAGTGGCTTGGATCCGCTTCGAAGACCAGGTCATGC
CTGACGGCAAGGTGCACAAGAAGCAGCAGCTACCGCAGACGGGGAAGCTC
GAAGACCTGTGGGACGAGTTCATGGCACACTCGGTGAAGCACATGGAGCA
CCACGCCTTAACCAAGTGGCAGCGCCAGATCCACAACATGTGCATGGCTA
CACTTCGCCCGAGGGCGAGCTGTTGATCGAAACCGACTTCATCGAGAAGT
ACAGGCACGAAGCGCGCGTGGTGCTGACATGTGCTACAGCACCAACAACG
ACCATGATGGTGGCCCTTGTACATCACAGCCCCGACGACCGTGGGGAGCA
CGAGACGGACGCTTGGATTTTTTTGTCCAGCGATCCGAACCATGACTTCG
ACTTCCATCACGCAGCGATGGAGGTCGTTGTTGCGCACTACACGACGGGA
CCGAAGTCTGCGGCCACCGCTGGGAGTGCGGCCCCACGAGTGCACATGTT
TACGGACGGGTGCGGCAAGCAGTACAAGGGGAAGCGGAACTTTCGAGCGG
TGGCACAGAGCCTCAACAGGCTTGGTGCTTGGTGTCCGCATTTTGCACAA
CTTCGCCGTCACTTCTCACTTCAAGGGCACTCATGATGGCACCGGGGCGC
ACATGAAGGGCCTACTTCGGAACGCGGAGATGTATGGCACGCGTATCCCC
GACGTCGACGTCGCGCACGAGTTTCTGCTAGGCTACGCCGCGGAGACGGA
CAAGGCGCGTGAAGGCCACTTCACAACCTGGTCCCCTTACCGGATCAGGA
GCTTCGAAGTCAGGAAGTTTGGCCCCAAGGAAATTCCTCGCCCACCGATA
GATCTGACGGGGATCCCTGGAAGTTCCAAGCTGTACTTTTTCACGGGAAC
AGAGGACGAGCAGGAGGACGTGCAGGATACCTTTAGTCTTGTGTGGGCTA
CTAGTGTGGGGGTGCAGACAGACGATTTTGTGGTGGGAGCGGCCGGAGAC
AAGGTGTTGACGGCTAGGAAGTGGGTGGTAGACGAGTCCAGGGCAAGGAA
ATGGGCCGCCCCCAAGAAGTTCACCAGATCTTGGAAGTTGCGGGTTCGGG
GCGCATCGTGCTACTGCTCAACTTGCCGAGTAGGCTGCTACGATGATTGC
ATGGTAGCGAAGGTGTACCCCGACTTGGTTGGCAAGTTGATGGAGAAGTC
GGGAAAGGAGAAGGTTGGGAGACGCACGCTTGGGACTCAATGACCGGCGA
TATCGTTCCGGTGATATCATCGGACGAGTCTCCAGTGGCGCGTACTCCCA
ACCCCATGCCTAGTCCGACGCTTGACGAGAGCATGGGGGAGAAGGGAGAT
GGGGAGGAGGATATGGAGGAGGAGAGGGATTAGGAAGAGGAAGAGG back to topprotein sequence of EsuBft2539_2a-0001 >EsuBft2539_2 ID=EsuBft2539_2|Name=EsuBft2539_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=236bp
MHNTNHDIAPRDAVSDGCYVYNERKTRSDVTNPEVMALAKAFWHSDDVSR
ATGNSGKDMYKESNKRDAPSHPRRQLMHKGDRVWRMFLESRRYLALKGRL
LEQDSSFTDPGRTTFLSTRCGWLVEPIVSQYACETHTQQVLYLESLSFLM
GSIHQNCDCKCDWCDGLGCKKWSVMCRDLSKFSDASACEKVYLLEGDSDG
GCGNRHALRICAQSAGSESLEVFRPTAPLWRNTKSE back to topmRNA from alignment at Scaffold_358:7103..11460+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2539_2a-0001 ID=EsuBft2539_2a-0001|Name=EsuBft2539_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4358bp|location=Sequence derived from alignment at Scaffold_358:7103..11460+ (Ectocarpus subulatus male Bft15b)
CATCCTGTTTCACCATGAGCAACGACGACTCATGCCTTGTTCTCCACGGC
AATCGACTCCGCTTAGTCGAATTACATACAGAGGACACCACTCTCGAAGT
CCTCAGCTCTAAACTTCAACATCTACGGCCGTGCCGACTCGGGCCTGGCC
GTGGCTCGTTGCAGTCTCATGCTTGTAGACCGCATAATTCACGTCCGCGG
GGAAAAGCGAGATTAGTAAGGCAGCACCGGAAGAAGCACAACCGCTGGAT
GCTGCTAACCTCCTGGCTGTTAAAGAAGGGTGCCACCAAGGCAGCTGGCA
GTAAGTTGTCCTCTGTAGTTGCTGATGAAGATCAGCTCCACGAACAGGGT
AGAGAGCATGCTGAAGCCATTCAAGAACGAGCAACAAAGCGCGGCAACCA
ACAGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCGGGGAAGGGGAAGCGCAAGGGGGCGGACGCAGCTCTCTCT
GACCCTCTAGCATTGGCTTACGATGGTGGACGAGAAGCGGGGCTACCTCA
GAGGCTTCACGCGAGGGACAGGTGAGGTTTTGGGTTGCTGAAGTGCTGTT
GAAATGCTTGGACTACAATTGTACTTCTTGGCGCCAATTCGTGCCGCTCT
AAATCTATCCAGTATTTGAATTTTGGTACGCACGGCCGTCTGTTGCTCGT
GCTCCCGAGATTGATCTCCATTCCACGACTTCGTGATGGTAGCGTAGAAA
GCGCATGAAAAGTTGCATGGAATCACTGTTGTACTTGCTGCAGTCACTCT
TCTTCGTGTGGCATTTGTTGTTGGCCCACCCATACTCCTGCTGAAAATAA
CACACACCCTCCCCCGACTCCAACAACTCCTGATACATGTACGCAGGCTT
CGGAGGAGCGCCGCTCTAGCGCGCTGGAGTTGATCCAGAAGGACCACGTG
TTGATGGAGCGAGGACGGGTCATGCTGGGGGCGAGCGCTGCAGACCAGGC
AGCAGCTAAGGAGGCGGCGGTCAACGCGGCGAACACTCGCGCGCTCCGTG
CCACGCTCCAAGCGCTGAAGCGGCACAGCAACAGCTCGACAGGGTGGACC
GCGTACACGACAGCGCTCGCCACAGCAGCGGGAGGGGAGGGAGCACACGT
GGCCTGACCCCAACCTGTGCCACCCTGGCAACCGGTACAAGCCCGCTGAG
CCTGGTGGAGTGAGCTTTGCCGAGCGAGCCAAGAGTCTCGGCATTCGGTA
CGAGACTTTCAGCGACGCACGTGTGCGGATGCACAACACGAACCACGACA
TCGCCCCCAGGGACGCTGTGAGTGACGGGTGCTACGTGTATAACGAGCGC
AAGACACGGAGTGACGTGACGAATCCCGAGGTAATGGCTCTCGCCAAGGC
TTTTTGGCACTCCGACGACGTTTCCCGTGCAACAGGAAATTCAGGCAAGT
TGCTGCGTCGCGCACGAGTTTCTGCTAGGCTACGCCGCGGAGGCGGACAA
GGCGCGTGAAGGCCACTTCACAACCTGGTCCCCTTACCGGATCAAGAGCT
TCGAAGTCAGGAAGTTTGGCCCCAAGGAATTCCTCGCCCACCGATAGATC
TGACGGGGATCCCTGGAAGTTCCAAGCTATACTTTTTCACGGGAACAGAG
GAGGAGCAGGAGGATGTGCAGGATACCTGTAGTCTTGTGTGGGCTACAAG
TGTGGGGGTGCAGACAGACGATTCTGGGGTGGAAGCGGCCGGAGGTAAGG
TGTTGACGGCTAGGNTTATTTTGTGTTGCTGAGGTCTACCGCTACTGCTC
TTGCACTAATGCTCGTTGTGGTGAACCGCAATACACCCGGTTGATTGTCC
GGATGGCACATGTGTGATGGAGATTCTCAGAGATTTTTTCTTTTTTTTTG
CCTGCAGGAGCGAGGGACATGTACAAGGAGTCTAACAAGAGAGACGCACC
CTCTCACCCTCGGAGACAGCTCATGCACAAGGGAGACAGAGTGTGGAGGA
TGTTCCTCGAGAGCCGGCGGTACCTGGCACTCAAGGGAAGACTACTTGAG
CAGGACAGCAGCTTCACCGACCCTGGCAGGACGACGTTTCTGTCGACGCG
GTGTGGTTGGTTAGGTGAGCCGCAATGTGTTTGTAAGGTTGGGGTGCCCA
AAACGTATACCTGGTGTCTGGTATGCCCGATCAATGTTGCTGACGCATGG
CTTTGTCGCCGAGGAATAAGACCTGAATTTTTTCTTTTCCTCTGCTTGCG
TCTTTTTCGATGTTTCGCTGCTCCCCTCCGCTTGCATCTTTCTCGATGTT
TCGCTGCTCCTCGACAGTGGAGCCAATAGTGTCGCAATATGCGTGCGAGA
CCCACACGCAGCAGGTGTTGTATCTCGAGTCCCTTTCCTTCTTGATGGGG
TCGATACACCAAAACTGCGACTGCAAGTGTGACTGGTGTGACGGGCTTGG
TTGTAAGAAGTGGTCTGTCATGTGCCGGGACCTGAGCAAGTTTTCTGACG
CTTCCGCATGCGAGAAGGTTTACCTGCTGGAGGGGGATTCCGACGGAGGG
TGCGGAAACCGGCATGCGCTTCGAATATGTGCTCAGAGTGCGGGTTCGGA
AAGCCTGGAGGTATTCCGACCAACTGCACCGCTCTGGCGAAACACAAAGA
GCGAGTAGTGGCTTGGATCCGCTTCGAAGACCAGGTCATGCCTGACGGCA
AGGTGCACAAGAAGCAGCAGCTACCGCAGACGGGGAAGCTCGAAGACCTG
TGGGACGAGTTCATGGCACACTCGGTGAAGGTAAGCTCAACAATCGTACG
TCATGAAGGATTTCACTGTTGTCTAAGCAGTCCTGCGCGCTCTTGGTAGC
GATTCATTACAACATGCCTCTTCATGACAACAAAACTAAATCCATGCCCT
CTTTGCCAAGCCATCTCCTGTTCACCTTCCCTTCCTTCCATTCCAGCACA
TGGAGCACCACGCCTTAACCAAGTGGCAGCGCCAGATCCACAACATGTGC
ATGGCTACACTTCGCCCGAGGGCGAGCTGTTGATCGAAACCGACTTCATC
GAGAAGTACAGGCACGAAGCGCGCGTGGTGCTGACATGTGCTACAGCACC
AACAACGACCATGATGGTGGCCCTTGTACATCACAGCCCCGACGACCGTG
GGGAGCACGAGACGGACGCTTGGATTTTTTTGTCCAGCGATCCGAACCAT
GACTTCGACTTCCATCACGCAGCGATGGAGGTCGTTGTTGCGCACTACAC
GACGGGACCGAAGTCTGCGGCCACCGCTGGGAGTGCGGCCCCACGAGTGC
ACATGTTTACGGACGGGTGCGGCAAGCAGTACAAGGGGAAGCGGAACTTT
CGAGCGGTGGCACAGAGCCTCAACAGGCTTGGTGTCCGCATTTTGCACAA
CTTCGCCGTCACTTCTCACTTCAANGCTGCTGCCACCGCTGGGAGTGCGG
TCCCACGAGTGCATATGTTTACGGACGGGTGCGGCAAGCAGTACAAGGGG
AAGCGGAACTTTCGAGCGGTGGCACAGAGCCTCAACAGGCTTGGTGTCCG
CATTTTGCACAACTTCGCCGTCACTTCTCACTTCAAGGGCACTCATGATG
GCACCGGGGCGCACATGAAGGGCCTACTTCGGAACGCGGAGATGTATGGC
ACGCGTATCCCCGACGTCGACGTCGCGCACGAGTTTCTGCTAGGCTACGC
CGCGGAGACGGACAAGGCGCGTGAAGGCCACTTCACAACCTGGTCCCCTT
ACCGGATCAGGAGCTTCGAAGTCAGGAAGTTTGGCCCCAAGGAAATTCCT
CGCCCACCGATAGATCTGACGGGGATCCCTGGAAGTTCCAAGCTGTACTT
TTTCACGGGAACAGAGGACGAGCAGGAGGACGTGCAGGATACCTTTAGTC
TTGTGTGGGCTACTAGTGTGGGGGTGCAGACAGACGATTTTGTGGTGGGA
GCGGCCGGAGACAAGGTGTTGACGGCTAGGAAGTGGGTGGTAGACGAGTC
CAGGGCAAGGAAATGGGCCGCCCCCAAGAAGTTCACCAGATCTTGGAAGT
TGCGGGTTCGGGGCGCATCGTGCTACTGCTCAACTTGCCGAGTAGGCTGC
TACGATGATTGCATGGTAGCGAAGGTGTACCCCGACTTGGTTGGCAAGTT
GATGGAGAAGTCGGGAAAGGAGAAGGTTGGGAGACGCACGCTTGGGACTC
AATGACCGGCGATATCGTTCCGGTGATATCATCGGACGAGTCTCCAGTGG
CGCGTACTCCCAACCCCATGCCTAGTCCGACGCTTGACGAGAGCATGGGG
GAGAAGGGAGATGGGGAGGAGGATATGGAGGAGGAGAGGGATTAGGAAGA
GGAAGAGG back to topCoding sequence (CDS) from alignment at Scaffold_358:7103..11460+ >EsuBft2539_2a-0001 ID=EsuBft2539_2a-0001|Name=EsuBft2539_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=711bp|location=Sequence derived from alignment at Scaffold_358:7103..11460+ (Ectocarpus subulatus male Bft15b)
ATGCACAACACGAACCACGACATCGCCCCCAGGGACGCTGTGAGTGACGG
GTGCTACGTGTATAACGAGCGCAAGACACGGAGTGACGTGACGAATCCCG
AGGTAATGGCTCTCGCCAAGGCTTTTTGGCACTCCGACGACGTTTCCCGT
GCAACAGGAAATTCAGGCAAGGACATGTACAAGGAGTCTAACAAGAGAGA
CGCACCCTCTCACCCTCGGAGACAGCTCATGCACAAGGGAGACAGAGTGT
GGAGGATGTTCCTCGAGAGCCGGCGGTACCTGGCACTCAAGGGAAGACTA
CTTGAGCAGGACAGCAGCTTCACCGACCCTGGCAGGACGACGTTTCTGTC
GACGCGGTGTGGTTGGTTAGTGGAGCCAATAGTGTCGCAATATGCGTGCG
AGACCCACACGCAGCAGGTGTTGTATCTCGAGTCCCTTTCCTTCTTGATG
GGGTCGATACACCAAAACTGCGACTGCAAGTGTGACTGGTGTGACGGGCT
TGGTTGTAAGAAGTGGTCTGTCATGTGCCGGGACCTGAGCAAGTTTTCTG
ACGCTTCCGCATGCGAGAAGGTTTACCTGCTGGAGGGGGATTCCGACGGA
GGGTGCGGAAACCGGCATGCGCTTCGAATATGTGCTCAGAGTGCGGGTTC
GGAAAGCCTGGAGGTATTCCGACCAACTGCACCGCTCTGGCGAAACACAA
AGAGCGAGTAG back to top
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