EsuBft2539_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2539_2a-0001
Unique Name	EsuBft2539_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_358	contig	Scaffold_358:7103..11460 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2539_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	294
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2539_2a	EsuBft2539_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_358 7103..11460 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2539_2a-0001	EsuBft2539_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_358 8381..9760 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2539_2a-0001-exon	agat-exon-59947	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 7103..7673 +
EsuBft2539_2a-0001-exon	EsuBft2539_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 8096..8550 +
EsuBft2539_2a-0001-exon	agat-exon-59945	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 9017..9216 +
EsuBft2539_2a-0001-exon	agat-exon-59949	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 9420..9882 +
EsuBft2539_2a-0001-exon	agat-exon-59946	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 10049..10485 +
EsuBft2539_2a-0001-exon	agat-exon-59948	Ectocarpus subulatus male Bft15b	exon	Scaffold_358 10641..11460 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2539_2a-0001-exon	agat-five_prime_utr-6555	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_358 7103..7673 +
EsuBft2539_2a-0001-exon	agat-five_prime_utr-6556	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_358 8096..8380 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2539_2a-0001-cds	EsuBft2539_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_358 8381..8550 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2539_2a-0001-exon	agat-three_prime_utr-10248	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_358 9761..9882 +
EsuBft2539_2a-0001-exon	agat-three_prime_utr-10249	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_358 10049..10485 +
EsuBft2539_2a-0001-exon	agat-three_prime_utr-10250	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_358 10641..11460 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_358:7103..11460+
coding sequence from alignment at Scaffold_358:7103..11460+

spliced messenger RNA

>EsuBft2539_2a-0001 ID=EsuBft2539_2a-0001|Name=EsuBft2539_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2946bp|location=Sequence derived from alignment at Scaffold_358:7103..11460+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CATCCTGTTTCACCATGAGCAACGACGACTCATGCCTTGTTCTCCACGGC
AATCGACTCCGCTTAGTCGAATTACATACAGAGGACACCACTCTCGAAGT
CCTCAGCTCTAAACTTCAACATCTACGGCCGTGCCGACTCGGGCCTGGCC
GTGGCTCGTTGCAGTCTCATGCTTGTAGACCGCATAATTCACGTCCGCGG
GGAAAAGCGAGATTAGTAAGGCAGCACCGGAAGAAGCACAACCGCTGGAT
GCTGCTAACCTCCTGGCTGTTAAAGAAGGGTGCCACCAAGGCAGCTGGCA
GTAAGTTGTCCTCTGTAGTTGCTGATGAAGATCAGCTCCACGAACAGGGT
AGAGAGCATGCTGAAGCCATTCAAGAACGAGCAACAAAGCGCGGCAACCA
ACAGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCGGGGAAGGGGAAGCGCAAGGGGGCGGACGCAGCTCTCTCT
GACCCTCTAGCATTGGCTTACGATGGTGGACGAGAAGCGGGGCTACCTCA
GAGGCTTCACGCGAGGGACAGACCAGGCAGCAGCTAAGGAGGCGGCGGTC
AACGCGGCGAACACTCGCGCGCTCCGTGCCACGCTCCAAGCGCTGAAGCG
GCACAGCAACAGCTCGACAGGGTGGACCGCGTACACGACAGCGCTCGCCA
CAGCAGCGGGAGGGGAGGGAGCACACGTGGCCTGACCCCAACCTGTGCCA
CCCTGGCAACCGGTACAAGCCCGCTGAGCCTGGTGGAGTGAGCTTTGCCG
AGCGAGCCAAGAGTCTCGGCATTCGGTACGAGACTTTCAGCGACGCACGT
GTGCGGATGCACAACACGAACCACGACATCGCCCCCAGGGACGCTGTGAG
TGACGGGTGCTACGTGTATAACGAGCGCAAGACACGGAGTGACGTGACGA
ATCCCGAGGTAATGGCTCTCGCCAAGGCTTTTTGGCACTCCGACGACGTT
TCCCGTGCAACAGGAAATTCAGGCAAGGACATGTACAAGGAGTCTAACAA
GAGAGACGCACCCTCTCACCCTCGGAGACAGCTCATGCACAAGGGAGACA
GAGTGTGGAGGATGTTCCTCGAGAGCCGGCGGTACCTGGCACTCAAGGGA
AGACTACTTGAGCAGGACAGCAGCTTCACCGACCCTGGCAGGACGACGTT
TCTGTCGACGCGGTGTGGTTGGTTAGTGGAGCCAATAGTGTCGCAATATG
CGTGCGAGACCCACACGCAGCAGGTGTTGTATCTCGAGTCCCTTTCCTTC
TTGATGGGGTCGATACACCAAAACTGCGACTGCAAGTGTGACTGGTGTGA
CGGGCTTGGTTGTAAGAAGTGGTCTGTCATGTGCCGGGACCTGAGCAAGT
TTTCTGACGCTTCCGCATGCGAGAAGGTTTACCTGCTGGAGGGGGATTCC
GACGGAGGGTGCGGAAACCGGCATGCGCTTCGAATATGTGCTCAGAGTGC
GGGTTCGGAAAGCCTGGAGGTATTCCGACCAACTGCACCGCTCTGGCGAA
ACACAAAGAGCGAGTAGTGGCTTGGATCCGCTTCGAAGACCAGGTCATGC
CTGACGGCAAGGTGCACAAGAAGCAGCAGCTACCGCAGACGGGGAAGCTC
GAAGACCTGTGGGACGAGTTCATGGCACACTCGGTGAAGCACATGGAGCA
CCACGCCTTAACCAAGTGGCAGCGCCAGATCCACAACATGTGCATGGCTA
CACTTCGCCCGAGGGCGAGCTGTTGATCGAAACCGACTTCATCGAGAAGT
ACAGGCACGAAGCGCGCGTGGTGCTGACATGTGCTACAGCACCAACAACG
ACCATGATGGTGGCCCTTGTACATCACAGCCCCGACGACCGTGGGGAGCA
CGAGACGGACGCTTGGATTTTTTTGTCCAGCGATCCGAACCATGACTTCG
ACTTCCATCACGCAGCGATGGAGGTCGTTGTTGCGCACTACACGACGGGA
CCGAAGTCTGCGGCCACCGCTGGGAGTGCGGCCCCACGAGTGCACATGTT
TACGGACGGGTGCGGCAAGCAGTACAAGGGGAAGCGGAACTTTCGAGCGG
TGGCACAGAGCCTCAACAGGCTTGGTGCTTGGTGTCCGCATTTTGCACAA
CTTCGCCGTCACTTCTCACTTCAAGGGCACTCATGATGGCACCGGGGCGC
ACATGAAGGGCCTACTTCGGAACGCGGAGATGTATGGCACGCGTATCCCC
GACGTCGACGTCGCGCACGAGTTTCTGCTAGGCTACGCCGCGGAGACGGA
CAAGGCGCGTGAAGGCCACTTCACAACCTGGTCCCCTTACCGGATCAGGA
GCTTCGAAGTCAGGAAGTTTGGCCCCAAGGAAATTCCTCGCCCACCGATA
GATCTGACGGGGATCCCTGGAAGTTCCAAGCTGTACTTTTTCACGGGAAC
AGAGGACGAGCAGGAGGACGTGCAGGATACCTTTAGTCTTGTGTGGGCTA
CTAGTGTGGGGGTGCAGACAGACGATTTTGTGGTGGGAGCGGCCGGAGAC
AAGGTGTTGACGGCTAGGAAGTGGGTGGTAGACGAGTCCAGGGCAAGGAA
ATGGGCCGCCCCCAAGAAGTTCACCAGATCTTGGAAGTTGCGGGTTCGGG
GCGCATCGTGCTACTGCTCAACTTGCCGAGTAGGCTGCTACGATGATTGC
ATGGTAGCGAAGGTGTACCCCGACTTGGTTGGCAAGTTGATGGAGAAGTC
GGGAAAGGAGAAGGTTGGGAGACGCACGCTTGGGACTCAATGACCGGCGA
TATCGTTCCGGTGATATCATCGGACGAGTCTCCAGTGGCGCGTACTCCCA
ACCCCATGCCTAGTCCGACGCTTGACGAGAGCATGGGGGAGAAGGGAGAT
GGGGAGGAGGATATGGAGGAGGAGAGGGATTAGGAAGAGGAAGAGG

protein sequence of EsuBft2539_2a-0001

>EsuBft2539_2 ID=EsuBft2539_2|Name=EsuBft2539_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=236bp
MHNTNHDIAPRDAVSDGCYVYNERKTRSDVTNPEVMALAKAFWHSDDVSR
ATGNSGKDMYKESNKRDAPSHPRRQLMHKGDRVWRMFLESRRYLALKGRL
LEQDSSFTDPGRTTFLSTRCGWLVEPIVSQYACETHTQQVLYLESLSFLM
GSIHQNCDCKCDWCDGLGCKKWSVMCRDLSKFSDASACEKVYLLEGDSDG
GCGNRHALRICAQSAGSESLEVFRPTAPLWRNTKSE

mRNA from alignment at Scaffold_358:7103..11460+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2539_2a-0001 ID=EsuBft2539_2a-0001|Name=EsuBft2539_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4358bp|location=Sequence derived from alignment at Scaffold_358:7103..11460+ (Ectocarpus subulatus male Bft15b)
CATCCTGTTTCACCATGAGCAACGACGACTCATGCCTTGTTCTCCACGGC
AATCGACTCCGCTTAGTCGAATTACATACAGAGGACACCACTCTCGAAGT
CCTCAGCTCTAAACTTCAACATCTACGGCCGTGCCGACTCGGGCCTGGCC
GTGGCTCGTTGCAGTCTCATGCTTGTAGACCGCATAATTCACGTCCGCGG
GGAAAAGCGAGATTAGTAAGGCAGCACCGGAAGAAGCACAACCGCTGGAT
GCTGCTAACCTCCTGGCTGTTAAAGAAGGGTGCCACCAAGGCAGCTGGCA
GTAAGTTGTCCTCTGTAGTTGCTGATGAAGATCAGCTCCACGAACAGGGT
AGAGAGCATGCTGAAGCCATTCAAGAACGAGCAACAAAGCGCGGCAACCA
ACAGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCGGGGAAGGGGAAGCGCAAGGGGGCGGACGCAGCTCTCTCT
GACCCTCTAGCATTGGCTTACGATGGTGGACGAGAAGCGGGGCTACCTCA
GAGGCTTCACGCGAGGGACAGGTGAGGTTTTGGGTTGCTGAAGTGCTGTT
GAAATGCTTGGACTACAATTGTACTTCTTGGCGCCAATTCGTGCCGCTCT
AAATCTATCCAGTATTTGAATTTTGGTACGCACGGCCGTCTGTTGCTCGT
GCTCCCGAGATTGATCTCCATTCCACGACTTCGTGATGGTAGCGTAGAAA
GCGCATGAAAAGTTGCATGGAATCACTGTTGTACTTGCTGCAGTCACTCT
TCTTCGTGTGGCATTTGTTGTTGGCCCACCCATACTCCTGCTGAAAATAA
CACACACCCTCCCCCGACTCCAACAACTCCTGATACATGTACGCAGGCTT
CGGAGGAGCGCCGCTCTAGCGCGCTGGAGTTGATCCAGAAGGACCACGTG
TTGATGGAGCGAGGACGGGTCATGCTGGGGGCGAGCGCTGCAGACCAGGC
AGCAGCTAAGGAGGCGGCGGTCAACGCGGCGAACACTCGCGCGCTCCGTG
CCACGCTCCAAGCGCTGAAGCGGCACAGCAACAGCTCGACAGGGTGGACC
GCGTACACGACAGCGCTCGCCACAGCAGCGGGAGGGGAGGGAGCACACGT
GGCCTGACCCCAACCTGTGCCACCCTGGCAACCGGTACAAGCCCGCTGAG
CCTGGTGGAGTGAGCTTTGCCGAGCGAGCCAAGAGTCTCGGCATTCGGTA
CGAGACTTTCAGCGACGCACGTGTGCGGATGCACAACACGAACCACGACA
TCGCCCCCAGGGACGCTGTGAGTGACGGGTGCTACGTGTATAACGAGCGC
AAGACACGGAGTGACGTGACGAATCCCGAGGTAATGGCTCTCGCCAAGGC
TTTTTGGCACTCCGACGACGTTTCCCGTGCAACAGGAAATTCAGGCAAGT
TGCTGCGTCGCGCACGAGTTTCTGCTAGGCTACGCCGCGGAGGCGGACAA
GGCGCGTGAAGGCCACTTCACAACCTGGTCCCCTTACCGGATCAAGAGCT
TCGAAGTCAGGAAGTTTGGCCCCAAGGAATTCCTCGCCCACCGATAGATC
TGACGGGGATCCCTGGAAGTTCCAAGCTATACTTTTTCACGGGAACAGAG
GAGGAGCAGGAGGATGTGCAGGATACCTGTAGTCTTGTGTGGGCTACAAG
TGTGGGGGTGCAGACAGACGATTCTGGGGTGGAAGCGGCCGGAGGTAAGG
TGTTGACGGCTAGGNTTATTTTGTGTTGCTGAGGTCTACCGCTACTGCTC
TTGCACTAATGCTCGTTGTGGTGAACCGCAATACACCCGGTTGATTGTCC
GGATGGCACATGTGTGATGGAGATTCTCAGAGATTTTTTCTTTTTTTTTG
CCTGCAGGAGCGAGGGACATGTACAAGGAGTCTAACAAGAGAGACGCACC
CTCTCACCCTCGGAGACAGCTCATGCACAAGGGAGACAGAGTGTGGAGGA
TGTTCCTCGAGAGCCGGCGGTACCTGGCACTCAAGGGAAGACTACTTGAG
CAGGACAGCAGCTTCACCGACCCTGGCAGGACGACGTTTCTGTCGACGCG
GTGTGGTTGGTTAGGTGAGCCGCAATGTGTTTGTAAGGTTGGGGTGCCCA
AAACGTATACCTGGTGTCTGGTATGCCCGATCAATGTTGCTGACGCATGG
CTTTGTCGCCGAGGAATAAGACCTGAATTTTTTCTTTTCCTCTGCTTGCG
TCTTTTTCGATGTTTCGCTGCTCCCCTCCGCTTGCATCTTTCTCGATGTT
TCGCTGCTCCTCGACAGTGGAGCCAATAGTGTCGCAATATGCGTGCGAGA
CCCACACGCAGCAGGTGTTGTATCTCGAGTCCCTTTCCTTCTTGATGGGG
TCGATACACCAAAACTGCGACTGCAAGTGTGACTGGTGTGACGGGCTTGG
TTGTAAGAAGTGGTCTGTCATGTGCCGGGACCTGAGCAAGTTTTCTGACG
CTTCCGCATGCGAGAAGGTTTACCTGCTGGAGGGGGATTCCGACGGAGGG
TGCGGAAACCGGCATGCGCTTCGAATATGTGCTCAGAGTGCGGGTTCGGA
AAGCCTGGAGGTATTCCGACCAACTGCACCGCTCTGGCGAAACACAAAGA
GCGAGTAGTGGCTTGGATCCGCTTCGAAGACCAGGTCATGCCTGACGGCA
AGGTGCACAAGAAGCAGCAGCTACCGCAGACGGGGAAGCTCGAAGACCTG
TGGGACGAGTTCATGGCACACTCGGTGAAGGTAAGCTCAACAATCGTACG
TCATGAAGGATTTCACTGTTGTCTAAGCAGTCCTGCGCGCTCTTGGTAGC
GATTCATTACAACATGCCTCTTCATGACAACAAAACTAAATCCATGCCCT
CTTTGCCAAGCCATCTCCTGTTCACCTTCCCTTCCTTCCATTCCAGCACA
TGGAGCACCACGCCTTAACCAAGTGGCAGCGCCAGATCCACAACATGTGC
ATGGCTACACTTCGCCCGAGGGCGAGCTGTTGATCGAAACCGACTTCATC
GAGAAGTACAGGCACGAAGCGCGCGTGGTGCTGACATGTGCTACAGCACC
AACAACGACCATGATGGTGGCCCTTGTACATCACAGCCCCGACGACCGTG
GGGAGCACGAGACGGACGCTTGGATTTTTTTGTCCAGCGATCCGAACCAT
GACTTCGACTTCCATCACGCAGCGATGGAGGTCGTTGTTGCGCACTACAC
GACGGGACCGAAGTCTGCGGCCACCGCTGGGAGTGCGGCCCCACGAGTGC
ACATGTTTACGGACGGGTGCGGCAAGCAGTACAAGGGGAAGCGGAACTTT
CGAGCGGTGGCACAGAGCCTCAACAGGCTTGGTGTCCGCATTTTGCACAA
CTTCGCCGTCACTTCTCACTTCAANGCTGCTGCCACCGCTGGGAGTGCGG
TCCCACGAGTGCATATGTTTACGGACGGGTGCGGCAAGCAGTACAAGGGG
AAGCGGAACTTTCGAGCGGTGGCACAGAGCCTCAACAGGCTTGGTGTCCG
CATTTTGCACAACTTCGCCGTCACTTCTCACTTCAAGGGCACTCATGATG
GCACCGGGGCGCACATGAAGGGCCTACTTCGGAACGCGGAGATGTATGGC
ACGCGTATCCCCGACGTCGACGTCGCGCACGAGTTTCTGCTAGGCTACGC
CGCGGAGACGGACAAGGCGCGTGAAGGCCACTTCACAACCTGGTCCCCTT
ACCGGATCAGGAGCTTCGAAGTCAGGAAGTTTGGCCCCAAGGAAATTCCT
CGCCCACCGATAGATCTGACGGGGATCCCTGGAAGTTCCAAGCTGTACTT
TTTCACGGGAACAGAGGACGAGCAGGAGGACGTGCAGGATACCTTTAGTC
TTGTGTGGGCTACTAGTGTGGGGGTGCAGACAGACGATTTTGTGGTGGGA
GCGGCCGGAGACAAGGTGTTGACGGCTAGGAAGTGGGTGGTAGACGAGTC
CAGGGCAAGGAAATGGGCCGCCCCCAAGAAGTTCACCAGATCTTGGAAGT
TGCGGGTTCGGGGCGCATCGTGCTACTGCTCAACTTGCCGAGTAGGCTGC
TACGATGATTGCATGGTAGCGAAGGTGTACCCCGACTTGGTTGGCAAGTT
GATGGAGAAGTCGGGAAAGGAGAAGGTTGGGAGACGCACGCTTGGGACTC
AATGACCGGCGATATCGTTCCGGTGATATCATCGGACGAGTCTCCAGTGG
CGCGTACTCCCAACCCCATGCCTAGTCCGACGCTTGACGAGAGCATGGGG
GAGAAGGGAGATGGGGAGGAGGATATGGAGGAGGAGAGGGATTAGGAAGA
GGAAGAGG

Coding sequence (CDS) from alignment at Scaffold_358:7103..11460+

>EsuBft2539_2a-0001 ID=EsuBft2539_2a-0001|Name=EsuBft2539_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=711bp|location=Sequence derived from alignment at Scaffold_358:7103..11460+ (Ectocarpus subulatus male Bft15b)
ATGCACAACACGAACCACGACATCGCCCCCAGGGACGCTGTGAGTGACGG
GTGCTACGTGTATAACGAGCGCAAGACACGGAGTGACGTGACGAATCCCG
AGGTAATGGCTCTCGCCAAGGCTTTTTGGCACTCCGACGACGTTTCCCGT
GCAACAGGAAATTCAGGCAAGGACATGTACAAGGAGTCTAACAAGAGAGA
CGCACCCTCTCACCCTCGGAGACAGCTCATGCACAAGGGAGACAGAGTGT
GGAGGATGTTCCTCGAGAGCCGGCGGTACCTGGCACTCAAGGGAAGACTA
CTTGAGCAGGACAGCAGCTTCACCGACCCTGGCAGGACGACGTTTCTGTC
GACGCGGTGTGGTTGGTTAGTGGAGCCAATAGTGTCGCAATATGCGTGCG
AGACCCACACGCAGCAGGTGTTGTATCTCGAGTCCCTTTCCTTCTTGATG
GGGTCGATACACCAAAACTGCGACTGCAAGTGTGACTGGTGTGACGGGCT
TGGTTGTAAGAAGTGGTCTGTCATGTGCCGGGACCTGAGCAAGTTTTCTG
ACGCTTCCGCATGCGAGAAGGTTTACCTGCTGGAGGGGGATTCCGACGGA
GGGTGCGGAAACCGGCATGCGCTTCGAATATGTGCTCAGAGTGCGGGTTC
GGAAAGCCTGGAGGTATTCCGACCAACTGCACCGCTCTGGCGAAACACAA
AGAGCGAGTAG