EsuBft2535_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2535_3a-0001
Unique NameEsuBft2535_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_255contigScaffold_255:27945..29354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2535_3
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCoil
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length35
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2535_3aEsuBft2535_3aEctocarpus subulatus male Bft15bgeneScaffold_255 27945..29354 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2535_3a-0001-exonEsuBft2535_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_255 27945..28253 -
EsuBft2535_3a-0001-exonagat-exon-55606Ectocarpus subulatus male Bft15bexonScaffold_255 29311..29354 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2535_3a-0001-cdsEsuBft2535_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_255 27945..28109 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2535_3a-0001-exonagat-five_prime_utr-6550Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_255 28110..28253 -
EsuBft2535_3a-0001-exonagat-five_prime_utr-6551Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_255 29311..29354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2535_3a-0001EsuBft2535_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_255 27945..28109 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2535_3a-0001 ID=EsuBft2535_3a-0001|Name=EsuBft2535_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=353bp|location=Sequence derived from alignment at Scaffold_255:27945..29354- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCGTACCACGGGAGAAGCCGGCGACGTGCTGGCCCAAACAACCGTCATGT
CGCAGGACGGCCGTCTGCTCTGCGTCTCAGAATTGCGCGAGGGGCTGGGC
CGAATAAGAAAGACCCCTGACAGTTGGCTGAGGGTTGGAAGGGTAGAGAG
TTTGCTTGGTTGGCGGCCCGGTGCGATCACGTCCTTCCATGCGTCCATCG
CTCCTCCGCCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNN
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protein sequence of EsuBft2535_3a-0001

>EsuBft2535_3 ID=EsuBft2535_3|Name=EsuBft2535_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=55bp
MRPSLLRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXX
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mRNA from alignment at Scaffold_255:27945..29354-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2535_3a-0001 ID=EsuBft2535_3a-0001|Name=EsuBft2535_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1410bp|location=Sequence derived from alignment at Scaffold_255:27945..29354- (Ectocarpus subulatus male Bft15b)
GCGTACCACGGGAGAAGCCGGCGACGTGCTGGCCCAAACAACCGGTAAGT
ACTGATCAATGCATCGTGGAGGTGCCCTCCGTGACTGCTGTTCGCTTTTT
TATTGCGTGGTCAGAGAGTTTCGTGGCGATGTTGCTCTGCTGTGAGTTCT
GCACGCCTGGATTCGGCAGGAAACAGGAACCCCACTAAGCGCGCTTAGCC
TCTACTGCAGCCCACACACTGCAACCTTGACACATAGGCGCGTGTATGCG
TTCAGTATGAGTGTAGGCATCCGTCAAGGATGGCGGGATGCGCATGTCGG
GGAACTGGAGGTCTTTCGTGTGCCCCCGAAAATAGGTCTCCCGAACCGCC
CGCAAACCGTTACACGAGTGCACAAGGCCCAACTACAACTCGGACCACAC
ATATCGCGCACTGCCTCCAGCAGTGAAGGGCAGCAGTCCTATGTCGACCC
AGTCTCACAGCCGAGTTTCACGGCGTAACTGCTTGAAATGGTGAAATGCT
TGTGGTGTCAAACATGACCCGCACAGCAACGGGTTTCCACTGTATGTACT
GGCGTTTTCTCTCTGTTTAGTCGAGTGCATTTTATGGTAACGGCACCAAT
CGCTAGCACTGAGTGAGAGCTTTCCTACGATACCTTCATCGGTCAAGGTT
GATGCCAAATACGAAAGTTACGGCGTTTTCCGTACTGCCCCTGCGACGAG
CCCCACAAAGCCGCTATTAATAGGGATTTAGTATAGGCGTGCGAACAATT
TCAGCGGTGTGCCGCATGAGACGGTGAGAGTGCCATACACACCACTCACC
TGACCGGTCTTTGTCCTACCTTTGCCAACACTTACCCAACACCCGCCTAG
GACACGCCCCGTCATCCGGGGCGATTTTTTGTGGCGCTTTCTGTGTCCAT
GTAGTGTTTGGTAAGCTGGAGCACATATCTTGCCTGAACGTGGGCAAGAA
AGCACTAGCTCACGCCGGAAGCATGCCCACGGGAAGGGCAAACGTTCGTA
ACGGTCATATTTACTGCCGTTAGGGCCCCTGATGACACCGCCCCGATGGC
CCCGCCTTGTTTTGTGTGTGTGCGCTGTATTTTCCGACGCTTCTTGCACA
GTCATGTCGCAGGACGGCCGTCTGCTCTGCGTCTCAGAATTGCGCGAGGG
GCTGGGCCGAATAAGAAAGACCCCTGACAGTTGGCTGAGGGTTGGAAGGG
TAGAGAGTTTGCTTGGTTGGCGGCCCGGTGCGATCACGTCCTTCCATGCG
TCCATCGCTCCTCCGCCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_255:27945..29354-

>EsuBft2535_3a-0001 ID=EsuBft2535_3a-0001|Name=EsuBft2535_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=165bp|location=Sequence derived from alignment at Scaffold_255:27945..29354- (Ectocarpus subulatus male Bft15b)
ATGCGTCCATCGCTCCTCCGCCTCANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNN
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