EsuBft2535_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2535_2a-0001
Unique Name	EsuBft2535_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_255	contig	Scaffold_255:12996..19162 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_019416-tr
ProteomeId	EsuBft2535_2
Protein domains	IPR001584
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Note	transposon ty3-g gag-pol polyprotein os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:ty3b-g pe:1 sv:3 [Automatic annotation]
Nb exon	3
Max annot lvl	33208\|Metazoa
Length	1782
Hectar predicted targeting category	other localisation
Evalue	2.35e-16
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38F42@33154\|Opisthokonta,3BI8I@33208\|Metazoa,3D5CW@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	retrotransposable element Tf2 155 kDa protein type 1-like
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2535_2a	EsuBft2535_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_255 12996..19162 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2535_2a-0001-exon	agat-exon-55605	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 12996..13346 +
EsuBft2535_2a-0001-exon	EsuBft2535_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 16803..16977 +
EsuBft2535_2a-0001-exon	agat-exon-55604	Ectocarpus subulatus male Bft15b	exon	Scaffold_255 17907..19162 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2535_2a-0001-cds	EsuBft2535_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_255 12996..13346 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2535_2a-0001	EsuBft2535_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_255 12996..19162 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_255:12996..19162+
coding sequence from alignment at Scaffold_255:12996..19162+

spliced messenger RNA

>EsuBft2535_2a-0001 ID=EsuBft2535_2a-0001|Name=EsuBft2535_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1782bp|location=Sequence derived from alignment at Scaffold_255:12996..19162+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGCCGCAGAACCGGAGGGACCACTCCGGACGGCTCGCAGGCAGG
AGACACAAATAGCAGCGAGCAGATCGACAGCATGCGGTCTGAGATCAGTT
CGCTGACACAGCAAATGGGCCAGCTGGTGCAGCTGGTCGGAGGACTTGCT
GCACGTATAGAGGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAG
CGGCGGCGCCGTGGAGAGCGTCGCCACAAGCACTGCAGGTCATTTTGGGA
CCGTGCAGTACGACGGGAGCGCGCAGGCAGCGGACCTGCGAAGAGAGTCT
GGTCCTTCGGGACGACACAGCGGCGAAGTAGGGGGTTCAGACCCCCAAGA
GGGAGAAAGCGAGGAACCGACTGGGAAGGACAGCAACGAGAGCGTGTACG
AAGCGGAACGGTTCGAGTTCGGTCGTGCTAGGACTGGCCACAGCGGCACC
GGAGCAGCGGCACCGGAGCAGCGGCACCGGAGCATGCGGACGGCATCGAA
CCGTGGCGCACGAACAAACATCTCTCTCAGATCCTCAGCGAACAAACATG
TGCACATCTTGTCCTCGCTTCCGGAGCGTGGACCACTCATCTCCTCACGG
ACTCGGGCCAAGACTACCACTGCTTCCGGTGGTACCGTCACCGGCCCAGC
TTACTTCGGACGTCAACCGCGGGCTACCATCGTTTCTCGAACGCCGTCGC
CTGTCCGTCGCTCTAACAGGTCTCGTACAAAAACCAAGACCACCCGGGTC
ATCGCGCATTCGCCGCACCCATCCGCGACGCTCGCGTCGGCATCTTCGTC
GACTGTTTCCGCGCCACCGGCACCTTCGTCATCATCACCGTCTTCAGCGT
GCTCTGTTTCGCCGGTTTCGCCTTCTTCACAGGTGTCGCCCACGTTTTCG
TCTCCCGCGGCGCCGTTGTCGCGCGTGGAGGTTGCGGCTGCTTCTGCAGC
CGACACATCATCTTCTGCCGCTCCTTCCGCCGGATCGCCTGATTCTCTTT
TGGAATCACTCGCCTTAGACACTGCTCATCTGCGGGACTGCGTCCAGAGT
TTTAGAGCTGTGGATTGGGCTCGGGAACAGCAACAGGATAGCGAATGTGT
GGCGGCCATGCGTTTTCTTTCCCGTGGCTCTCCCTCCCCACCTCCCCCTG
ATTTGCTGACCCTCGTTGCCCCACTTCGTTCTCCCCGGTTCGACGACGTG
TTGGCGCTGGCGGCGAAGACCAGGTTGCACACGACCGACGACAACGTCAC
TCTTCTCGTGCACAAATCAGCGCCGTCGCCGGTTGGACGCTCTGGGGGTA
GGACCACTCGCTTGCCGAATACTGGAGTCCCTCGTGTATACGTGCCGATG
CTCATGCGTCCGTGGGTTTTGCGTGCTTGCCATACCCACGCGTTCTTCCA
TTTGGGTGTTCACCGTACACAGCGGCTGCTCGAACGTTTTTACTGGTGGA
TTGGTGTGGATCGCTCCGTGCGCTGGTGGCTCCGATCGTGTCTGGTGTGT
CAAGCCCGCAAGACTTCACGCCAAACTGCTCGGTGGCCCATCATCGCTAT
GCCGCTGCCGCAAGGGCCTGGAACTGTCGTCGGCGTCGACTTCTTTGGGC
CTCTGCCATTGACTGCCAAGGGCAACTCTTACATCTTGCTGTTCACCGAC
CGCTTCAGCCGGAGAGCCGACATGTTCGCTGTCACAGCCGCTGAGTTTAC
GGCCAAAAGAACGGCCAACATCTTCGTCAACCAGTACATGACCAAGTGGG
GATGCCCGACTACGCTGTTGTCGGACAACNNN

protein sequence of EsuBft2535_2a-0001

>EsuBft2535_2 ID=EsuBft2535_2|Name=EsuBft2535_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=594bp
MAGRRTGGTTPDGSQAGDTNSSEQIDSMRSEISSLTQQMGQLVQLVGGLA
ARIEEKSGGATEGAAESGGAVESVATSTAGHFGTVQYDGSAQAADLRRES
GPSGRHSGEVGGSDPQEGESEEPTGKDSNESVYEAERFEFGRARTGHSGT
GAAAPEQRHRSMRTASNRGARTNISLRSSANKHVHILSSLPERGPLISSR
TRAKTTTASGGTVTGPAYFGRQPRATIVSRTPSPVRRSNRSRTKTKTTRV
IAHSPHPSATLASASSSTVSAPPAPSSSSPSSACSVSPVSPSSQVSPTFS
SPAAPLSRVEVAAASAADTSSSAAPSAGSPDSLLESLALDTAHLRDCVQS
FRAVDWAREQQQDSECVAAMRFLSRGSPSPPPPDLLTLVAPLRSPRFDDV
LALAAKTRLHTTDDNVTLLVHKSAPSPVGRSGGRTTRLPNTGVPRVYVPM
LMRPWVLRACHTHAFFHLGVHRTQRLLERFYWWIGVDRSVRWWLRSCLVC
QARKTSRQTARWPIIAMPLPQGPGTVVGVDFFGPLPLTAKGNSYILLFTD
RFSRRADMFAVTAAEFTAKRTANIFVNQYMTKWGCPTTLLSDNX

mRNA from alignment at Scaffold_255:12996..19162+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2535_2a-0001 ID=EsuBft2535_2a-0001|Name=EsuBft2535_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6167bp|location=Sequence derived from alignment at Scaffold_255:12996..19162+ (Ectocarpus subulatus male Bft15b)
ATGGCGGGCCGCAGAACCGGAGGGACCACTCCGGACGGCTCGCAGGCAGG
AGACACAAATAGCAGCGAGCAGATCGACAGCATGCGGTCTGAGATCAGTT
CGCTGACACAGCAAATGGGCCAGCTGGTGCAGCTGGTCGGAGGACTTGCT
GCACGTATAGAGGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAG
CGGCGGCGCCGTGGAGAGCGTCGCCACAAGCACTGCAGGTCATTTTGGGA
CCGTGCAGTACGACGGGAGCGCGCAGGCAGCGGACCTGCGAAGAGAGTCT
GGTCCTTCGGGACGACACAGCGGCGAAGTAGGGGGTTCAGACCCCCAAGA
GGTGAGAGTAGCCGCTGCTCACAATCAAGCTTGTTTCAGCAGCGCCATGG
GAAGTGGTGCTGCTGTCTTCGGTAGTGCGAGCGTGGNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTGTGTAATCAGC
GTGGCCTGTCCAATCTGTCCTGCCTTGGTCCTGCCCTGATAGTGCGGCCG
TTGGAATCCTTCGTGATAGCGACGGTTTCATTTATGTTTTGAGTTTGTAG
GCGAGGGTTTTTGATCCGGATGGCTGAGTTTTTCCCTTGCACCCGTTGTT
GTATGAGTAACTTAAGTAGATCCGGAGTATCCATGCCCCACTGATGGTTT
GTCAATAGCTTGACGAACCGGGGAGGGTGTTCGTGTGTCTGGATACGAGC
ATGGTAAATCTGCTAGCAGCACGGGGGTGGGTACGTAGACAGGAGCATGC
GTATGCCTGAAAGAGGCTACTATGTGTGGGCCCCCTTCCCCGAATTCGGG
AGGGCCACTTCTTCCCTTCCTTTCCTCGCTCCCGCGGGTGCCTAATCAGA
GAGAGTTAAAGCGTGTCTTCTCCTCCCAAGTACAGACATACCAACATAAA
TGTCCCTTAACTGGGTTTGGGCCGGCGTTTCCGAACCCTGCCGGACCTTG
GAGGTTGGCAACGGTGCGCCAAACCGGGTTGCGCAGGTTGTACAACGCCT
AGGGGTTACAGGTCACTGCAACCCCCCCGTAACCGTGCCCACTGGCCACC
TGTGCAGGGAGAAAGCGAGGAACCGACTGGGAAGGACAGCAACGAGAGCG
TGTACGAAGCGGAACGGTTCGAGTTCGGTCGTGCTAGGACTGGCCACAGC
GGCACCGGAGCAGCGGCACCGGAGCAGCGGCACCGGAGCATGCGGACGGC
ATCGAACCGTGGCGCACGAACAAACATCTCTCGTGCTGTCAATTATTATT
TATTTTCTTGAAGTATCACACAACAACAAATATATCCATCTCTTCCATCT
CGCTAGAAAATATATACCATGGTATAGTCTTTGGAAATAAGTCAAGATAG
ACTAGCAATGAATCCATACAGATGGCACCCGCACTTACGAACCTCCAGTT
TCGGCCGAAGCTGGGGTTCTTATGTTGCCTTTCATCCTCTCGTGGGCTAC
AAATCGCCACTATCTAGGTTTAGTGTTGGGATTCTTAACTGGGCTCACAA
ATGGTGTTCAAGTTCTTAGCTTCTGATTTTTTTCGAGTCTCAATTTCTTA
ACTGCCAAGTTCTTAAGTGCGGGCGCTATCTGTAGCGTGAGCAAAAAAAA
GCTACCTGTCTGTATGTCTACGGTTTCGCAGACAGCATACAACGATGTCT
CCCCTGTGGGTGACAGGCTCAATAAGGCAGTTTGGTAGCCATGCTGTGTA
TCTATCTGTCTCATGTTATTATGTTGGGAAGTTAGTTGCAGACGGAAGAT
TTAGGGGAACTCGGTTTGTCGGGTGTTCTACATCTATATTAAAAATATGT
ATGGGACCCTTATTGTGTGGTTGCGGAGCAAGAGCGACTCGGGGTGTGTG
TATTTTCGTCAACGTATTTTTTGTGTGTGATGTATGGGGGCATGTGCGGC
GCGGGAGAACATGTTTGTTTACCGTGTTGTGTATGGCATGTCGTTAAATT
AAATGTGAGAAGGGCACGGGAGAACATTACCTCATCATTGATTGATTGCC
TCCTGTTTTCCGTTTTTTTCTGAATATAGGTAGGTGTTGTTGGGTGATGA
CGTCGTCACTGGTTTTGTAGAGAGACGCGGCAGAGATGGCGCGGATATCC
CGGCTGCCTTAATTGTGTACCTGCATCGTGGAAGACCCCTTCAATGTGGA
ACGATTCCTAGTCAGATCCTCAGCGAACAAACATGTGCACATCTTGTCCT
CGCTTCCGGAGCGTGGACCACTCATCTCCTCACGGACTCGGGCCAAGACT
ACCACTGCTTCCGGTGGTACCGTCACCGGCCCAGCTTACTTCGGACGTCA
ACCGCGGGCTACCATCGTTTCTCGAACGCCGTCGCCTGTCCGTCGCTCTA
ACAGGTCTCGTACAAAAACCAAGACCACCCGGGTCATCGCGCATTCGCCG
CACCCATCCGCGACGCTCGCGTCGGCATCTTCGTCGACTGTTTCCGCGCC
ACCGGCACCTTCGTCATCATCACCGTCTTCAGCGTGCTCTGTTTCGCCGG
TTTCGCCTTCTTCACAGGTGTCGCCCACGTTTTCGTCTCCCGCGGCGCCG
TTGTCGCGCGTGGAGGTTGCGGCTGCTTCTGCAGCCGACACATCATCTTC
TGCCGCTCCTTCCGCCGGATCGCCTGATTCTCTTTTGGAATCACTCGCCT
TAGACACTGCTCATCTGCGGGACTGCGTCCAGAGTTTTAGAGCTGTGGAT
TGGGCTCGGGAACAGCAACAGGATAGCGAATGTGTGGCGGCCATGCGTTT
TCTTTCCCGTGGCTCTCCCTCCCCACCTCCCCCTGATTTGCTGACCCTCG
TTGCCCCACTTCGTTCTCCCCGGTTCGACGACGTGTTGGCGCTGGCGGCG
AAGACCAGGTTGCACACGACCGACGACAACGTCACTCTTCTCGTGCACAA
ATCAGCGCCGTCGCCGGTTGGACGCTCTGGGGGTAGGACCACTCGCTTGC
CGAATACTGGAGTCCCTCGTGTATACGTGCCGATGCTCATGCGTCCGTGG
GTTTTGCGTGCTTGCCATACCCACGCGTTCTTCCATTTGGGTGTTCACCG
TACACAGCGGCTGCTCGAACGTTTTTACTGGTGGATTGGTGTGGATCGCT
CCGTGCGCTGGTGGCTCCGATCGTGTCTGGTGTGTCAAGCCCGCAAGACT
TCACGCCAAACTGCTCGGTGGCCCATCATCGCTATGCCGCTGCCGCAAGG
GCCTGGAACTGTCGTCGGCGTCGACTTCTTTGGGCCTCTGCCATTGACTG
CCAAGGGCAACTCTTACATCTTGCTGTTCACCGACCGCTTCAGCCGGAGA
GCCGACATGTTCGCTGTCACAGCCGCTGAGTTTACGGCCAAAAGAACGGC
CAACATCTTCGTCAACCAGTACATGACCAAGTGGGGATGCCCGACTACGC
TGTTGTCGGACAACNNN

Coding sequence (CDS) from alignment at Scaffold_255:12996..19162+

>EsuBft2535_2a-0001 ID=EsuBft2535_2a-0001|Name=EsuBft2535_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1782bp|location=Sequence derived from alignment at Scaffold_255:12996..19162+ (Ectocarpus subulatus male Bft15b)
ATGGCGGGCCGCAGAACCGGAGGGACCACTCCGGACGGCTCGCAGGCAGG
AGACACAAATAGCAGCGAGCAGATCGACAGCATGCGGTCTGAGATCAGTT
CGCTGACACAGCAAATGGGCCAGCTGGTGCAGCTGGTCGGAGGACTTGCT
GCACGTATAGAGGAGAAGTCCGGCGGTGCCACGGAGGGCGCCGCTGAAAG
CGGCGGCGCCGTGGAGAGCGTCGCCACAAGCACTGCAGGTCATTTTGGGA
CCGTGCAGTACGACGGGAGCGCGCAGGCAGCGGACCTGCGAAGAGAGTCT
GGTCCTTCGGGACGACACAGCGGCGAAGTAGGGGGTTCAGACCCCCAAGA
GGGAGAAAGCGAGGAACCGACTGGGAAGGACAGCAACGAGAGCGTGTACG
AAGCGGAACGGTTCGAGTTCGGTCGTGCTAGGACTGGCCACAGCGGCACC
GGAGCAGCGGCACCGGAGCAGCGGCACCGGAGCATGCGGACGGCATCGAA
CCGTGGCGCACGAACAAACATCTCTCTCAGATCCTCAGCGAACAAACATG
TGCACATCTTGTCCTCGCTTCCGGAGCGTGGACCACTCATCTCCTCACGG
ACTCGGGCCAAGACTACCACTGCTTCCGGTGGTACCGTCACCGGCCCAGC
TTACTTCGGACGTCAACCGCGGGCTACCATCGTTTCTCGAACGCCGTCGC
CTGTCCGTCGCTCTAACAGGTCTCGTACAAAAACCAAGACCACCCGGGTC
ATCGCGCATTCGCCGCACCCATCCGCGACGCTCGCGTCGGCATCTTCGTC
GACTGTTTCCGCGCCACCGGCACCTTCGTCATCATCACCGTCTTCAGCGT
GCTCTGTTTCGCCGGTTTCGCCTTCTTCACAGGTGTCGCCCACGTTTTCG
TCTCCCGCGGCGCCGTTGTCGCGCGTGGAGGTTGCGGCTGCTTCTGCAGC
CGACACATCATCTTCTGCCGCTCCTTCCGCCGGATCGCCTGATTCTCTTT
TGGAATCACTCGCCTTAGACACTGCTCATCTGCGGGACTGCGTCCAGAGT
TTTAGAGCTGTGGATTGGGCTCGGGAACAGCAACAGGATAGCGAATGTGT
GGCGGCCATGCGTTTTCTTTCCCGTGGCTCTCCCTCCCCACCTCCCCCTG
ATTTGCTGACCCTCGTTGCCCCACTTCGTTCTCCCCGGTTCGACGACGTG
TTGGCGCTGGCGGCGAAGACCAGGTTGCACACGACCGACGACAACGTCAC
TCTTCTCGTGCACAAATCAGCGCCGTCGCCGGTTGGACGCTCTGGGGGTA
GGACCACTCGCTTGCCGAATACTGGAGTCCCTCGTGTATACGTGCCGATG
CTCATGCGTCCGTGGGTTTTGCGTGCTTGCCATACCCACGCGTTCTTCCA
TTTGGGTGTTCACCGTACACAGCGGCTGCTCGAACGTTTTTACTGGTGGA
TTGGTGTGGATCGCTCCGTGCGCTGGTGGCTCCGATCGTGTCTGGTGTGT
CAAGCCCGCAAGACTTCACGCCAAACTGCTCGGTGGCCCATCATCGCTAT
GCCGCTGCCGCAAGGGCCTGGAACTGTCGTCGGCGTCGACTTCTTTGGGC
CTCTGCCATTGACTGCCAAGGGCAACTCTTACATCTTGCTGTTCACCGAC
CGCTTCAGCCGGAGAGCCGACATGTTCGCTGTCACAGCCGCTGAGTTTAC
GGCCAAAAGAACGGCCAACATCTTCGTCAACCAGTACATGACCAAGTGGG
GATGCCCGACTACGCTGTTGTCGGACAACNNN