Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 7070.TC002224-PA |
| ProteomeId | EsuBft2522_6 |
| Protein domains | PTHR11439 |
| Protein domains | IPR012337 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 1207 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.47e-26 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,41WYJ@6656|Arthropoda,3SH01@50557|Insecta |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Encoded by |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
| GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2522_6a-0001 ID=EsuBft2522_6a-0001|Name=EsuBft2522_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1207bp|location=Sequence derived from alignment at Scaffold_30:4702..5908+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GAACAGGCAAACCCGGTCAGCACCCCCGGGTATGGAGCAGAACTATCAAC
CGAGCAGCCACAAGACCGACTACTCGGACCCGAGGACAAGCAGAGATTCC
AGACCATCACCGGGAGTCTCCTGTACTTGGCCCAATGCACCCGCTACGAT
CTGTCATACGCAGTGCACCAACTGACACGGGCATGCGCAAACCCAGCACA
GGTCCACATGGCTGCGGCCAAGCACCTACTACGGTACCTACGCGGAACGC
CGGACCTGCCGATCGTGTACAAGAAGGGGCAGTTCAGACTCTCGTGCTTC
ACTGACTCGTCATTTGGAGCCAACCCAGACAACGGCAGGTCTACCACCGG
ATACCTGTTCTTCCTAGGAGGGGGACTGATCAGCTACGGAGCCAAGGCAC
AGACTCTCGCAGCACAGAACACCGTGGAGGCCGAACTTCAAGCGCTGAGC
TTCAGTGCTCGCGAGGCAGTCTACATCTCCAACTTCATGACGGAAATCGG
ATTCAAGACCTTTCGATCGGTACCCATCAACAGCGACAGCACCGGAGCAT
GTGACTGTGGCCAGCACGCGATGTTCAGCTCTAGAACCAAGCACATCGCG
CTCCAGTTCTTCTTCCTCAGGGAACTCACGAAGGGGCACCGCATCACACT
TCACCACCAACCTGGTGCCACGATCTTGGCGGACATCGCGACGAAACATC
TCCCGAAGCAGCGATTCGCCACCATCATGCAACTCATCAAGAACTACAAA
TGCTAGAATGTTATTAAGCACAAAATCGCATAGTATGGTTGATTGTTTTG
GACGCGTGTATTGCTCACAGGATGGATTCACTCACGTGGAGGTCGATATT
GTCTGATATGGATTGGGAATCGAGGGGTCCCAGAAATGGCAGCGAAGTGA
AGTTTTGGAACATCGACTACTCGCCTAATCGAGGGGTCGTGTCGAGGAAA
ACTGTTCCAACGTAGTCAGGCACAGTTTACCATAGGTGCGACTGCGGCAA
CTAGCCTTCCGTAGACATAACACAGAAAGAAGAGATGGTACTCAGCAGAG
AACATGAGCACAGAGTTGTAGCGGAGATAATTTGGCAGGCGAGACTGTAG
TTGTTTTATTGTTCCGAACCCCGAAATTCCGGTACTCGGGCCATTACTCC
GGAGACCCTCGGAACCTGCTGTGTTTTTGCTGCTTGTTTCTTGTTTTTGT
TTTGTTG back to topprotein sequence of EsuBft2522_6a-0001 >EsuBft2522_6 ID=EsuBft2522_6|Name=EsuBft2522_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=182bp
MAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYL
FFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFK
TFRSVPINSDSTGACDCGQHAMFSSRTKHIALQFFFLRELTKGHRITLHH
QPGATILADIATKHLPKQRFATIMQLIKNYKC back to topmRNA from alignment at Scaffold_30:4702..5908+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2522_6a-0001 ID=EsuBft2522_6a-0001|Name=EsuBft2522_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1207bp|location=Sequence derived from alignment at Scaffold_30:4702..5908+ (Ectocarpus subulatus male Bft15b)
GAACAGGCAAACCCGGTCAGCACCCCCGGGTATGGAGCAGAACTATCAAC
CGAGCAGCCACAAGACCGACTACTCGGACCCGAGGACAAGCAGAGATTCC
AGACCATCACCGGGAGTCTCCTGTACTTGGCCCAATGCACCCGCTACGAT
CTGTCATACGCAGTGCACCAACTGACACGGGCATGCGCAAACCCAGCACA
GGTCCACATGGCTGCGGCCAAGCACCTACTACGGTACCTACGCGGAACGC
CGGACCTGCCGATCGTGTACAAGAAGGGGCAGTTCAGACTCTCGTGCTTC
ACTGACTCGTCATTTGGAGCCAACCCAGACAACGGCAGGTCTACCACCGG
ATACCTGTTCTTCCTAGGAGGGGGACTGATCAGCTACGGAGCCAAGGCAC
AGACTCTCGCAGCACAGAACACCGTGGAGGCCGAACTTCAAGCGCTGAGC
TTCAGTGCTCGCGAGGCAGTCTACATCTCCAACTTCATGACGGAAATCGG
ATTCAAGACCTTTCGATCGGTACCCATCAACAGCGACAGCACCGGAGCAT
GTGACTGTGGCCAGCACGCGATGTTCAGCTCTAGAACCAAGCACATCGCG
CTCCAGTTCTTCTTCCTCAGGGAACTCACGAAGGGGCACCGCATCACACT
TCACCACCAACCTGGTGCCACGATCTTGGCGGACATCGCGACGAAACATC
TCCCGAAGCAGCGATTCGCCACCATCATGCAACTCATCAAGAACTACAAA
TGCTAGAATGTTATTAAGCACAAAATCGCATAGTATGGTTGATTGTTTTG
GACGCGTGTATTGCTCACAGGATGGATTCACTCACGTGGAGGTCGATATT
GTCTGATATGGATTGGGAATCGAGGGGTCCCAGAAATGGCAGCGAAGTGA
AGTTTTGGAACATCGACTACTCGCCTAATCGAGGGGTCGTGTCGAGGAAA
ACTGTTCCAACGTAGTCAGGCACAGTTTACCATAGGTGCGACTGCGGCAA
CTAGCCTTCCGTAGACATAACACAGAAAGAAGAGATGGTACTCAGCAGAG
AACATGAGCACAGAGTTGTAGCGGAGATAATTTGGCAGGCGAGACTGTAG
TTGTTTTATTGTTCCGAACCCCGAAATTCCGGTACTCGGGCCATTACTCC
GGAGACCCTCGGAACCTGCTGTGTTTTTGCTGCTTGTTTCTTGTTTTTGT
TTTGTTG back to topCoding sequence (CDS) from alignment at Scaffold_30:4702..5908+ >EsuBft2522_6a-0001 ID=EsuBft2522_6a-0001|Name=EsuBft2522_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=549bp|location=Sequence derived from alignment at Scaffold_30:4702..5908+ (Ectocarpus subulatus male Bft15b)
ATGGCTGCGGCCAAGCACCTACTACGGTACCTACGCGGAACGCCGGACCT
GCCGATCGTGTACAAGAAGGGGCAGTTCAGACTCTCGTGCTTCACTGACT
CGTCATTTGGAGCCAACCCAGACAACGGCAGGTCTACCACCGGATACCTG
TTCTTCCTAGGAGGGGGACTGATCAGCTACGGAGCCAAGGCACAGACTCT
CGCAGCACAGAACACCGTGGAGGCCGAACTTCAAGCGCTGAGCTTCAGTG
CTCGCGAGGCAGTCTACATCTCCAACTTCATGACGGAAATCGGATTCAAG
ACCTTTCGATCGGTACCCATCAACAGCGACAGCACCGGAGCATGTGACTG
TGGCCAGCACGCGATGTTCAGCTCTAGAACCAAGCACATCGCGCTCCAGT
TCTTCTTCCTCAGGGAACTCACGAAGGGGCACCGCATCACACTTCACCAC
CAACCTGGTGCCACGATCTTGGCGGACATCGCGACGAAACATCTCCCGAA
GCAGCGATTCGCCACCATCATGCAACTCATCAAGAACTACAAATGCTAG back to top
|