EsuBft2522_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2522_5a-0001
Unique Name	EsuBft2522_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_30	contig	Scaffold_30:5911..9151 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2522_5
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	277
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_5a	EsuBft2522_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_30 5911..9151 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_5a-0001	EsuBft2522_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_30 7373..9151 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_5a-0001-exon	agat-exon-32915	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 5911..5930 -
EsuBft2522_5a-0001-exon	agat-exon-32913	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 6141..6305 -
EsuBft2522_5a-0001-exon	agat-exon-32914	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 6434..8658 -
EsuBft2522_5a-0001-exon	EsuBft2522_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 8785..9151 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_5a-0001-exon	agat-three_prime_utr-10188	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_30 5911..5930 -
EsuBft2522_5a-0001-exon	agat-three_prime_utr-10189	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_30 6141..6305 -
EsuBft2522_5a-0001-exon	agat-three_prime_utr-10190	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_30 6434..7372 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_5a-0001-cds	EsuBft2522_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_30 7373..8658 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_30:5911..9151-
coding sequence from alignment at Scaffold_30:5911..9151-

spliced messenger RNA

>EsuBft2522_5a-0001 ID=EsuBft2522_5a-0001|Name=EsuBft2522_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2777bp|location=Sequence derived from alignment at Scaffold_30:5911..9151- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGACGATGTCAAAGACCGTATTCTGTTCCACCCCATGCTTTCGAG
AGGTACTCTGGAAGAGACGCTGAGGCTGGCCGAGCACGAGCAGAGGATCA
AACGGAGGTCTGGAGAGGGGATCGAGGACACGAGGCATGCGCCCGTCGCT
GCCGGTGTGGGCCGGGGCGGCGGCATGAGGACAGCAGCTGCTGCGGGAGC
GGATGGCGGGCGATCTCATGAGCAGAGAGGTGCCTTCTTCTGTCAGGTTC
ACGGAGCGAACTCCTCTCACAACACCCCGGACTGCCATAAACTTCGCCAG
GACTTCTTGTTCCACTACAACGACTTCATGGCGTTCATTCGCGAGAGGGA
CAGTATGCGGGGACCAGGGCCCGACGCTTGCCAGCCGCGAGTCTTCAACG
AGGCCTTCCGCACCCCTAATCTGCCGGCGACACCGCAACAGCAACAGCAG
CAGCAGCAGCAGCAGACATCAGCGCACCCTCAACGACCTCTGCCTCCTCG
ACGGCGATCCCCTCTTCACCTCCGGGCGACATTCCTCCAGTTAGTGGCGC
CCGTCTTCGTCTCTTCCACACAAATACTTCGAAGTAGTGTGGAACCTCTA
GGCGAGTCTGATTCTCTGACTGGAAATGAGATTGGAGTTGTTAGTGATGG
GGAGTTGTCTGGTGTTCCCGTTGCTGGTATGTCTGTGCTTGATGTTCCTG
TTGTTCCTGTAGTGAATCCTGCTGTAACCTCTCAAGCTCCGGTATCCCAC
ACTAGGATGCCAACACCCAAAGGTGGTGAGCAGTTGCAGGGAGACTCGGG
GACGAGTGCGGGGATATTTCATGCGAGGGAAGGAGTTGCGTTTGAGTATG
ATGTGGCTGTGTTGGGTCGTGCCGAACAAATGGATGTTGACGTTTTCCAC
CACCGCGCTGGCCACTTTCCCGAACCCATTTTGAGTATGACTGCCGAGCA
ACAAGGGAACACCCTTCCCAGGGAGTTGGAACCCGGGAACACTGCCGCTT
CGCCGCCCTCTGCCAACGCTGCCACTTGGCCTGCCGTCGCCGCCGCCACG
GCGGGGACCATCACCGCTTCGCCGCCCGCTGCTGCCGCTGTACCGTGGGG
ACCCGCCACTGCCGACGCTACGTCATCGTCGCCGTCGCACACCGCTGGTG
GCGCACCATGGAATGCAGCCGCCGCCACCGACGCACCGTCGCCGCTGCCG
CCAACCTCCGGGACCGCGTTACCCGCCACTGTCACCGCGGCCGCGCCGTC
GCCGCGGCCGCCGACCTCCGGGGCGCCGTGCCGCTTGTGCCTTCGCCAGG
TGCCACCGCGCTGCCGCGCCCGAGGACGACCGCGACGAGGACCACCGACG
GCGCCGCCGCCGCTTCGTCATCGCCGCAGCATACCACCGCAGGTGGGACC
CGAATTCATCCAGCCGCCCCTGTCGTCCCCGCGTCGTCGCCGACATTACC
TTACTCAGGGCATGCTTCGCCACAGGCGGACTAGTTGTCTTCTATTGAGG
CCGCTGCTTCATTTTCGACGGCGCGTGATGCACGGCAAGCCGATGGTTAG
GCATGGGTTGGTGGGGGCCGGTGAGCTGGGGGGCGGCGAGCAGGGGGGCG
ATGGAGGACAATACGGTTGGGGGGGAGACGTGAAGGCGATCAAGAGCAAA
TAGGTGGGGGTCGATACCGGTGGAAATGATGAGTGGAGAATGAGTGGTCG
GTCGACCCCGCGTGGCACGGCTTGTATCGCCGGGTCTGCTCTTTGTCATG
TGCGGTTCGTGTTTCGTTTTGTTTTTGTTTGCCTTTCTTTCTAGCAGCGA
GATTTCTTCTTTCAATTGTTGCTGTTCTTAAATCTAAAATCATGGGGGGG
GTGTCATGTGTGACCATGATTCGAGATGGCATGAACAGCAATCGAGTTGT
TTCTGTTTTCATATGAATACCTGCTTAGCAAACGGACTGTTGACGTATTG
ATAATAACGGAGTGTTCTTTCATGGACTCTGGAAATATCAGAGGTGTGTT
TTGGGATGTGACAGAAGAGAGGCTGGTTGCATGGTTGTTTGATTTTCTAC
CATTGAACAGCAACGGTGACACCGGTTTGCTTGTACGCGCTGCGTAGTAA
TTGGTCCTTGGAAACTGTAGTGGAGGAATAATTTGGCATGTTTTGATTGA
TGAGTACGTGTTGAATTGTCTTCGTGTGGCATTTTACTTGGTAGAAGGCT
TTACGTTATCTCCTGTGTATTTGACGCGCCTTTCCATGTACCATCGGTCA
GGGATACACCCGTTCTCTCTGTTTTCGATGCTGTCGGCAATTATCATGGG
GAGGGAGAATAGGTTGTGTCATGACAATTGCCACAGCATCACGAACAAAT
GAATGCTTTGTTTTTTTTTACTCTGCCCGATTTGCAAAGTTCATGATTTG
ATTGCGTGAATGGCAATGCAAGTTTTTATGCGGTTATATTTGGTGTGCTT
TCCGTACTCAAATGTCACAGGATGCGTTTGTCAAGTAGAGGGTTGATCCC
TTGCCGTCTGGTGTCCGGAGCAGGGGGGCCGTAATCAGACTGCATTGGTA
GGGTTTGCAGGAAGGAAATCTATTGCTCTGTTGTCGAAGGATAGATGTTA
NGTAGAGGGTTAATCGCTTAACGTCTGGTGTTCGGAGTAGGGGGGGCGTA
GCCAGACACGTATTTGTAGGGTATGCAGGAAGGAAAATTGTTGTTCTGTT
GGAAATTGAAGAGATGTTATTCACAGAATGTGGCGTCTTGCAGCAGCGGA
GGTGGCGGCGCGCTTGTGTCTCATCTC

protein sequence of EsuBft2522_5a-0001

>EsuBft2522_5 ID=EsuBft2522_5|Name=EsuBft2522_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=550bp
MYDDVKDRILFHPMLSRGTLEETLRLAEHEQRIKRRSGEGIEDTRHAPVA
AGVGRGGGMRTAAAAGADGGRSHEQRGAFFCQVHGANSSHNTPDCHKLRQ
DFLFHYNDFMAFIRERDSMRGPGPDACQPRVFNEAFRTPNLPATPQQQQQ
QQQQQTSAHPQRPLPPRRRSPLHLRATFLQLVAPVFVSSTQILRSSVEPL
GESDSLTGNEIGVVSDGELSGVPVAGMSVLDVPVVPVVNPAVTSQAPVSH
TRMPTPKGGEQLQGDSGTSAGIFHAREGVAFEYDVAVLGRAEQMDVDVFH
HRAGHFPEPILSMTAEQQGNTLPRELEPGNTAASPPSANAATWPAVAAAT
AGTITASPPAAAAVPWGPATADATSSSPSHTAGGAPWNAAAATDAPSPLP
PTSGTALPATVTAAAPSPRPPTSGAPCRLCLRQVPPRCRARGRPRRGPPT
APPPLRHRRSIPPQVGPEFIQPPLSSPRRRRHYLTQGMLRHRRTSCLLLR
PLLHFRRRVMHGKPMVRHGLVGAGELGGGEQGGDGGQYGWGGDVKAIKSK

mRNA from alignment at Scaffold_30:5911..9151-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2522_5a-0001 ID=EsuBft2522_5a-0001|Name=EsuBft2522_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3241bp|location=Sequence derived from alignment at Scaffold_30:5911..9151- (Ectocarpus subulatus male Bft15b)
ATGTACGACGATGTCAAAGACCGTATTCTGTTCCACCCCATGCTTTCGAG
AGGTACTCTGGAAGAGACGCTGAGGCTGGCCGAGCACGAGCAGAGGATCA
AACGGAGGTCTGGAGAGGGGATCGAGGACACGAGGCATGCGCCCGTCGCT
GCCGGTGTGGGCCGGGGCGGCGGCATGAGGACAGCAGCTGCTGCGGGAGC
GGATGGCGGGCGATCTCATGAGCAGAGAGGTGCCTTCTTCTGTCAGGTTC
ACGGAGCGAACTCCTCTCACAACACCCCGGACTGCCATAAACTTCGCCAG
GACTTCTTGTTCCACTACAACGACTTCATGGCGTTCATTCGCGAGAGGGA
CAGTATGCGGGGACCAGGTTTTTCTCAGGCCCGGGGGCAAGACTCGGGGC
GCTTGTCGGGCGGATCATATCGAGAGCAGCTGCACCAACTGGACCATGGG
GCAAGCTAGGGTCGGGGCCGCCCGTTCTGTCCGACTTGTGCAGGGCCCGA
CGCTTGCCAGCCGCGAGTCTTCAACGAGGCCTTCCGCACCCCTAATCTGC
CGGCGACACCGCAACAGCAACAGCAGCAGCAGCAGCAGCAGACATCAGCG
CACCCTCAACGACCTCTGCCTCCTCGACGGCGATCCCCTCTTCACCTCCG
GGCGACATTCCTCCAGTTAGTGGCGCCCGTCTTCGTCTCTTCCACACAAA
TACTTCGAAGTAGTGTGGAACCTCTAGGCGAGTCTGATTCTCTGACTGGA
AATGAGATTGGAGTTGTTAGTGATGGGGAGTTGTCTGGTGTTCCCGTTGC
TGGTATGTCTGTGCTTGATGTTCCTGTTGTTCCTGTAGTGAATCCTGCTG
TAACCTCTCAAGCTCCGGTATCCCACACTAGGATGCCAACACCCAAAGGT
GGTGAGCAGTTGCAGGGAGACTCGGGGACGAGTGCGGGGATATTTCATGC
GAGGGAAGGAGTTGCGTTTGAGTATGATGTGGCTGTGTTGGGTCGTGCCG
AACAAATGGATGTTGACGTTTTCCACCACCGCGCTGGCCACTTTCCCGAA
CCCATTTTGAGTATGACTGCCGAGCAACAAGGGAACACCCTTCCCAGGGA
GTTGGAACCCGGGAACACTGCCGCTTCGCCGCCCTCTGCCAACGCTGCCA
CTTGGCCTGCCGTCGCCGCCGCCACGGCGGGGACCATCACCGCTTCGCCG
CCCGCTGCTGCCGCTGTACCGTGGGGACCCGCCACTGCCGACGCTACGTC
ATCGTCGCCGTCGCACACCGCTGGTGGCGCACCATGGAATGCAGCCGCCG
CCACCGACGCACCGTCGCCGCTGCCGCCAACCTCCGGGACCGCGTTACCC
GCCACTGTCACCGCGGCCGCGCCGTCGCCGCGGCCGCCGACCTCCGGGGC
GCCGTGCCGCTTGTGCCTTCGCCAGGTGCCACCGCGCTGCCGCGCCCGAG
GACGACCGCGACGAGGACCACCGACGGCGCCGCCGCCGCTTCGTCATCGC
CGCAGCATACCACCGCAGGTGGGACCCGAATTCATCCAGCCGCCCCTGTC
GTCCCCGCGTCGTCGCCGACATTACCTTACTCAGGGCATGCTTCGCCACA
GGCGGACTAGTTGTCTTCTATTGAGGCCGCTGCTTCATTTTCGACGGCGC
GTGATGCACGGCAAGCCGATGGTTAGGCATGGGTTGGTGGGGGCCGGTGA
GCTGGGGGGCGGCGAGCAGGGGGGCGATGGAGGACAATACGGTTGGGGGG
GAGACGTGAAGGCGATCAAGAGCAAATAGGTGGGGGTCGATACCGGTGGA
AATGATGAGTGGAGAATGAGTGGTCGGTCGACCCCGCGTGGCACGGCTTG
TATCGCCGGGTCTGCTCTTTGTCATGTGCGGTTCGTGTTTCGTTTTGTTT
TTGTTTGCCTTTCTTTCTAGCAGCGAGATTTCTTCTTTCAATTGTTGCTG
TTCTTAAATCTAAAATCATGGGGGGGGTGTCATGTGTGACCATGATTCGA
GATGGCATGAACAGCAATCGAGTTGTTTCTGTTTTCATATGAATACCTGC
TTAGCAAACGGACTGTTGACGTATTGATAATAACGGAGTGTTCTTTCATG
GACTCTGGAAATATCAGAGGTGTGTTTTGGGATGTGACAGAAGAGAGGCT
GGTTGCATGGTTGTTTGATTTTCTACCATTGAACAGCAACGGTGACACCG
GTTTGCTTGTACGCGCTGCGTAGTAATTGGTCCTTGGAAACTGTAGTGGA
GGAATAATTTGGCATGTTTTGATTGATGAGTACGTGTTGAATTGTCTTCG
TGTGGCATTTTACTTGGTAGAAGGCTTTACGTTATCTCCTGTGTATTTGA
CGCGCCTTTCCATGTACCATCGGTCAGGGATACACCCGTTCTCTCTGTTT
TCGATGCTGTCGGCAATTATCATGGGGAGGGAGAATAGGTTGTGTCATGA
CAATTGCCACAGCATCACGAACAAATGAATGCTTTGTTTTTTTTTACTCT
GCCCGATTTGCAAAGTTCATGATTTGATTGCGTGAATGGCAATGCAAGTT
TTTATGCGGTTATATTTGGTGTGCTTTCCGTACTCAAATGTCACAGGATG
CGTTTGTCAAGTAGAGGGTTGATCCCTTGCCGTCTGGTGTCCGGAGCAGG
GGGGCCGTAATCAGACTGCATTGGTAGGGTTTGCAGGAAGGAAATCTATT
GCTCTGTTGTCGAAGGATGTACGAAGTGTTTGTCAAGTAGAGGGTTAATC
GCTTAACGTCTGGTGTTCGGAGTAGGGGGGGCGTAGCCAGACACGTATTT
GTAGGGTATGCAGGAAGGAAAATTGTTGTTCTGTTGGAAATTGAAGAGAT
GTTANGTAGAGGGTTAATCGCTTAACGTCTGGTGTTCGGAGTAGGGGGGG
CGTAGCCAGACACGTATTTGTAGGGTATGCAGGAAGGAAAATTGTTGTTC
TGTTGGAAATTGAAGAGATGTTATTCACAGAATGTGGCGTCTTGCAGCAG
CGGAGGTGGCGGTGCCGCTGTAGCTCGTAGACTTTGTAGTCTACCACAGA
GGTTACACTGCTGTCACCGTTCTATCACAGAGAGAGGTTGGTCTACACTG
CTGTGAGATTGGTAGGCCCGAGCGAGCTCTGGAAAGAGAAATGTAGATAG
ATTTTCTGATCAACTGACTCCCTGGTCAGGCTTTGATGGGTGCTAGATGA
GAGTGAGCACAAGGGGCGAAGGCGCGCTTGTGTCTCATCTC

Coding sequence (CDS) from alignment at Scaffold_30:5911..9151-

>EsuBft2522_5a-0001 ID=EsuBft2522_5a-0001|Name=EsuBft2522_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1653bp|location=Sequence derived from alignment at Scaffold_30:5911..9151- (Ectocarpus subulatus male Bft15b)
ATGTACGACGATGTCAAAGACCGTATTCTGTTCCACCCCATGCTTTCGAG
AGGTACTCTGGAAGAGACGCTGAGGCTGGCCGAGCACGAGCAGAGGATCA
AACGGAGGTCTGGAGAGGGGATCGAGGACACGAGGCATGCGCCCGTCGCT
GCCGGTGTGGGCCGGGGCGGCGGCATGAGGACAGCAGCTGCTGCGGGAGC
GGATGGCGGGCGATCTCATGAGCAGAGAGGTGCCTTCTTCTGTCAGGTTC
ACGGAGCGAACTCCTCTCACAACACCCCGGACTGCCATAAACTTCGCCAG
GACTTCTTGTTCCACTACAACGACTTCATGGCGTTCATTCGCGAGAGGGA
CAGTATGCGGGGACCAGGGCCCGACGCTTGCCAGCCGCGAGTCTTCAACG
AGGCCTTCCGCACCCCTAATCTGCCGGCGACACCGCAACAGCAACAGCAG
CAGCAGCAGCAGCAGACATCAGCGCACCCTCAACGACCTCTGCCTCCTCG
ACGGCGATCCCCTCTTCACCTCCGGGCGACATTCCTCCAGTTAGTGGCGC
CCGTCTTCGTCTCTTCCACACAAATACTTCGAAGTAGTGTGGAACCTCTA
GGCGAGTCTGATTCTCTGACTGGAAATGAGATTGGAGTTGTTAGTGATGG
GGAGTTGTCTGGTGTTCCCGTTGCTGGTATGTCTGTGCTTGATGTTCCTG
TTGTTCCTGTAGTGAATCCTGCTGTAACCTCTCAAGCTCCGGTATCCCAC
ACTAGGATGCCAACACCCAAAGGTGGTGAGCAGTTGCAGGGAGACTCGGG
GACGAGTGCGGGGATATTTCATGCGAGGGAAGGAGTTGCGTTTGAGTATG
ATGTGGCTGTGTTGGGTCGTGCCGAACAAATGGATGTTGACGTTTTCCAC
CACCGCGCTGGCCACTTTCCCGAACCCATTTTGAGTATGACTGCCGAGCA
ACAAGGGAACACCCTTCCCAGGGAGTTGGAACCCGGGAACACTGCCGCTT
CGCCGCCCTCTGCCAACGCTGCCACTTGGCCTGCCGTCGCCGCCGCCACG
GCGGGGACCATCACCGCTTCGCCGCCCGCTGCTGCCGCTGTACCGTGGGG
ACCCGCCACTGCCGACGCTACGTCATCGTCGCCGTCGCACACCGCTGGTG
GCGCACCATGGAATGCAGCCGCCGCCACCGACGCACCGTCGCCGCTGCCG
CCAACCTCCGGGACCGCGTTACCCGCCACTGTCACCGCGGCCGCGCCGTC
GCCGCGGCCGCCGACCTCCGGGGCGCCGTGCCGCTTGTGCCTTCGCCAGG
TGCCACCGCGCTGCCGCGCCCGAGGACGACCGCGACGAGGACCACCGACG
GCGCCGCCGCCGCTTCGTCATCGCCGCAGCATACCACCGCAGGTGGGACC
CGAATTCATCCAGCCGCCCCTGTCGTCCCCGCGTCGTCGCCGACATTACC
TTACTCAGGGCATGCTTCGCCACAGGCGGACTAGTTGTCTTCTATTGAGG
CCGCTGCTTCATTTTCGACGGCGCGTGATGCACGGCAAGCCGATGGTTAG
GCATGGGTTGGTGGGGGCCGGTGAGCTGGGGGGCGGCGAGCAGGGGGGCG
ATGGAGGACAATACGGTTGGGGGGGAGACGTGAAGGCGATCAAGAGCAAA
TAG