EsuBft2522_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2522_3a-0001
Unique Name	EsuBft2522_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_30	contig	Scaffold_30:31934..33172 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	6500.XP_005092035.1
ProteomeId	EsuBft2522_3
Protein domains	TRANSMEMBRANE
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	TMhelix
Protein domains	CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	89
Evalue	0.000948
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,39TZY@33154\|Opisthokonta,3BI15@33208\|Metazoa,3D94V@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Ribonuclease H protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_3a	EsuBft2522_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_30 31934..33172 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_3a-0001-exon	EsuBft2522_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 31934..32153 +
EsuBft2522_3a-0001-exon	agat-exon-32911	Ectocarpus subulatus male Bft15b	exon	Scaffold_30 32503..33172 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_3a-0001-cds	EsuBft2522_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_30 31934..32153 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_3a-0001-exon	agat-three_prime_utr-10185	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_30 32790..33172 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2522_3a-0001	EsuBft2522_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_30 31934..32789 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_30:31934..33172+
coding sequence from alignment at Scaffold_30:31934..33172+

spliced messenger RNA

>EsuBft2522_3a-0001 ID=EsuBft2522_3a-0001|Name=EsuBft2522_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=890bp|location=Sequence derived from alignment at Scaffold_30:31934..33172+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGGGACACCATCGGGCGCCAAGCAACGAGGAGAGGACAGGACATA
CCAACTGATGGCGATGACAGAGACAGACGGTCCTTGCAGTTACTCTGCGT
CGTCGGTTGTTGGAGCACTTGGAGACAAGGATGATGTCGGCGTGAAGCGA
ACGGGAGCAAAAAAGCCGGCCCCGTCCTCACCTTCGTCCTCATCGCCAGC
ACCTGCGCACACTTCTGTGGACTACTCGGAAAGGTTCGACGTGGGCCAAG
GCCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTCTTCTTT
GCCGCGATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGGACCCCAAGGT
GACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGTACACGGGCAAGA
AGGGCTTGTCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCCGGAACAGTGCTTCGATGTACGACAGGCGACGGGCCAACCGCCAGCT
CAAGATACGGCTACTCCAGGCTGAAGTGGTGGAGACTCTCCTGTATGGGT
GCGCCTCGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACC
CACCGCCAGTTCCTTACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTC
AGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCA

protein sequence of EsuBft2522_3a-0001

>EsuBft2522_3 ID=EsuBft2522_3|Name=EsuBft2522_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=169bp
MRGTPSGAKQRGEDRTYQLMAMTETDGPCSYSASSVVGALGDKDDVGVKR
TGAKKPAPSSPSSSSPAPAHTSVDYSERFDVGQGLRQGCNLAPLLFNFFF
AAMLMVAVAEFDKDPKVTADMVKIGTQVEYTGKKGLSAXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_30:31934..33172+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2522_3a-0001 ID=EsuBft2522_3a-0001|Name=EsuBft2522_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1239bp|location=Sequence derived from alignment at Scaffold_30:31934..33172+ (Ectocarpus subulatus male Bft15b)
ATGCGTGGGACACCATCGGGCGCCAAGCAACGAGGAGAGGACAGGACATA
CCAACTGATGGCGATGACAGAGACAGACGGTCCTTGCAGTTACTCTGCGT
CGTCGGTTGTTGGAGCACTTGGAGACAAGGATGATGTCGGCGTGAAGCGA
ACGGGAGCAAAAAAGCCGGCCCCGTCCTCACCTTCGTCCTCATCGCCAGC
ACCTGCGCACACTTCTGTGGGTATGTAGATCGCGACACCTGCTACGCCTG
GTTCTACTCTACGGGATCGATGCATTGTATGTCTGTATCTCGGTGTGCGG
CAGGCACACTGTGACTGTGTTGGCAGTCACTCGCTCACGTCGGTGATCAG
ACGTTATTTACATAGTCCATACAGCAGTTATTTACATATGCAGCAGTTGC
CCTCCAGAGAGCACGTTGAAGAGGTGCAGTCCAGTCCGGCCTCCGGCCTC
CGGCCACCGCCCCGGCGCTTCGATAACAGCACGCCAGCTAATCAGGTGGC
TAGATTCACGGGACAGCACATCCAATGACCCGAAAGCAACCACCACATCA
CACGAACGACGGGCAGTAGACTACTCGGAAAGGTTCGACGTGGGCCAAGG
CCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTCTTCTTTG
CCGCGATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGGACCCCAAGGTG
ACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGTACACGGGCAAGAA
GGGCTTGTCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCGGAACAGTGCTTCGATGTACGACAGGCGACGGGCCAACCGCCAGCTC
AAGATACGGCTACTCCAGGCTGAAGTGGTGGAGACTCTCCTGTATGGGTG
CGCCTCGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCC
ACCGCCAGTTCCTTACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCA
GACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAGGCA

Coding sequence (CDS) from alignment at Scaffold_30:31934..33172+

>EsuBft2522_3a-0001 ID=EsuBft2522_3a-0001|Name=EsuBft2522_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=507bp|location=Sequence derived from alignment at Scaffold_30:31934..33172+ (Ectocarpus subulatus male Bft15b)
ATGCGTGGGACACCATCGGGCGCCAAGCAACGAGGAGAGGACAGGACATA
CCAACTGATGGCGATGACAGAGACAGACGGTCCTTGCAGTTACTCTGCGT
CGTCGGTTGTTGGAGCACTTGGAGACAAGGATGATGTCGGCGTGAAGCGA
ACGGGAGCAAAAAAGCCGGCCCCGTCCTCACCTTCGTCCTCATCGCCAGC
ACCTGCGCACACTTCTGTGGACTACTCGGAAAGGTTCGACGTGGGCCAAG
GCCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTCTTCTTT
GCCGCGATGCTCATGGTCGCCGTGGCCGAGTTCGACAAGGACCCCAAGGT
GACGGCGGACATGGTCAAGATCGGGACACAAGTGGAGTACACGGGCAAGA
AGGGCTTGTCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNN